Mutagenetix > Incidental Mutation

Incidental Mutation 'R4751:Ncoa3'

357558

Institutional Source

Beutler Lab

Gene Symbol

Ncoa3

Ensembl Gene

ENSMUSG00000027678

Gene Name

nuclear receptor coactivator 3

Synonyms

TRAM-1, RAC3, AIB1, Src3, KAT13B, TRAM1, pCIP, bHLHe42, 2010305B15Rik

MMRRC Submission

041970-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.954) question?

Stock #

R4751 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

165992636-166073242 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 166069903 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 1383 (M1383K)

Ref Sequence

ENSEMBL: ENSMUSP00000104875 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000088086] [ENSMUST00000088095] [ENSMUST00000109249] [ENSMUST00000109252] [ENSMUST00000146497]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000088086

SMART Domains

Protein: ENSMUSP00000085405
Gene: ENSMUSG00000006800

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
Pfam:Sulfatase	44	375	2.8e-50	PFAM
low complexity region	512	523	N/A	INTRINSIC
Pfam:DUF3740	533	669	5.6e-47	PFAM
low complexity region	702	720	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000088095
AA Change: M1384K

PolyPhen 2 Score 0.811 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000085416
Gene: ENSMUSG00000027678
AA Change: M1384K

Domain	Start	End	E-Value	Type
HLH	32	89	5.63e-9	SMART
PAS	113	179	1.16e-11	SMART
Pfam:PAS_11	261	372	1.6e-34	PFAM
Pfam:NCOA_u2	451	564	7.1e-46	PFAM
low complexity region	586	599	N/A	INTRINSIC
Pfam:SRC-1	608	696	1.6e-32	PFAM
Pfam:DUF4927	714	801	2e-32	PFAM
coiled coil region	960	997	N/A	INTRINSIC
Pfam:Nuc_rec_co-act	1056	1104	2.1e-27	PFAM
low complexity region	1180	1197	N/A	INTRINSIC
low complexity region	1221	1233	N/A	INTRINSIC
low complexity region	1243	1263	N/A	INTRINSIC
DUF1518	1270	1327	1.08e-21	SMART
low complexity region	1384	1398	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000109249

SMART Domains

Protein: ENSMUSP00000104872
Gene: ENSMUSG00000006800

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
Pfam:Sulfatase	44	375	2.8e-50	PFAM
low complexity region	512	523	N/A	INTRINSIC
Pfam:DUF3740	532	670	1.3e-46	PFAM
low complexity region	702	720	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000109252
AA Change: M1383K

PolyPhen 2 Score 0.811 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000104875
Gene: ENSMUSG00000027678
AA Change: M1383K

Domain	Start	End	E-Value	Type
HLH	32	89	5.63e-9	SMART
PAS	113	179	1.16e-11	SMART
Pfam:PAS_11	261	372	4.1e-34	PFAM
low complexity region	438	467	N/A	INTRINSIC
low complexity region	502	522	N/A	INTRINSIC
low complexity region	527	535	N/A	INTRINSIC
low complexity region	586	599	N/A	INTRINSIC
Pfam:SRC-1	608	696	3.5e-28	PFAM
coiled coil region	960	997	N/A	INTRINSIC
Pfam:Nuc_rec_co-act	1056	1106	6.6e-29	PFAM
low complexity region	1180	1197	N/A	INTRINSIC
low complexity region	1218	1232	N/A	INTRINSIC
low complexity region	1242	1262	N/A	INTRINSIC
DUF1518	1269	1326	1.08e-21	SMART
low complexity region	1383	1397	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125503

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139394

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139658

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143996

Predicted Effect

probably benign
Transcript: ENSMUST00000146497

Meta Mutation Damage Score

0.3690

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.4%

Validation Efficiency

95% (124/131)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a nuclear receptor coactivator that interacts with nuclear hormone receptors to enhance their transcriptional activator functions. The encoded protein has histone acetyltransferase activity and recruits p300/CBP-associated factor and CREB binding protein as part of a multisubunit coactivation complex. This protein is initially found in the cytoplasm but is translocated into the nucleus upon phosphorylation. Several transcript variants encoding different isoforms have been found for this gene. In addition, a polymorphic repeat region is found in the C-terminus of the encoded protein. [provided by RefSeq, Mar 2010]
PHENOTYPE: Nullizygous mice exhibit growth defects and reduced serum IGF-1 levels and may show impaired proliferative responses to various factors, delayed mammary gland growth and puberty, reproductive dysfunction, susceptibility to endotoxin shock, altered lymphopoiesis, and protection against obesity. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 115 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9130023H24Rik	A	T	7: 128,237,086	C112S	probably benign	Het
Abca13	G	A	11: 9,277,973		probably null	Het
Abca14	A	G	7: 120,312,177	E1328G	probably benign	Het
Abca9	T	A	11: 110,130,570	I1105F	probably benign	Het
Abr	T	C	11: 76,456,608	N396D	possibly damaging	Het
Aftph	A	C	11: 20,727,074	C178W	probably damaging	Het
Akr1c14	T	C	13: 4,065,338	F89S	possibly damaging	Het
Ank3	C	T	10: 69,986,206	A1518V	probably benign	Het
Arfgap2	T	G	2: 91,267,368	S143R	probably benign	Het
Aspdh	T	A	7: 44,467,205	C107*	probably null	Het
Asphd2	C	A	5: 112,391,746	G74W	probably damaging	Het
AU040320	G	A	4: 126,854,466		probably null	Het
B3glct	T	A	5: 149,725,402		probably null	Het
Bcl9l	A	G	9: 44,506,803	K646R	probably damaging	Het
Brat1	T	G	5: 140,718,296	L768R	probably damaging	Het
Btbd18	T	A	2: 84,667,921	Y634*	probably null	Het
Bub1	T	A	2: 127,823,938		probably benign	Het
Carns1	A	T	19: 4,166,418	D588E	probably damaging	Het
Cast	T	C	13: 74,746,047	K141E	probably damaging	Het
Cd109	CATTTATTTATTTATTTATTTATTTATTTATTTAT	CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT	9: 78,712,500		probably benign	Het
Chsy3	T	C	18: 59,175,800	S42P	possibly damaging	Het
Clca1	A	T	3: 145,004,848	F865I	possibly damaging	Het
Clec4f	T	A	6: 83,645,282	M526L	possibly damaging	Het
Clnk	T	C	5: 38,720,913	E301G	probably benign	Het
Colgalt2	T	A	1: 152,489,876	I309N	probably benign	Het
Cyp2e1	A	T	7: 140,774,716	K326*	probably null	Het
Dagla	T	A	19: 10,250,394	T717S	probably benign	Het
Dnajc11	G	A	4: 151,968,542	R141H	probably benign	Het
Dst	A	G	1: 34,191,884	K2853E	probably benign	Het
Eif4g1	A	G	16: 20,686,515	K1208E	possibly damaging	Het
Elane	A	G	10: 79,886,791	R48G	probably benign	Het
Fbxo30	T	A	10: 11,290,195	N220K	probably benign	Het
Fbxo33	A	T	12: 59,200,928		probably benign	Het
Fetub	G	A	16: 22,937,895	V169I	probably benign	Het
Gm13762	A	G	2: 88,973,133	C253R	probably damaging	Het
Gm5861	T	A	5: 11,186,491	Y138N	probably damaging	Het
Gpx6	A	C	13: 21,317,064	Q107H	probably damaging	Het
Hist2h2bb	A	T	3: 96,269,151		probably benign	Het
Homer3	A	T	8: 70,285,434	I19F	probably damaging	Het
Hspa4	C	T	11: 53,284,199	V144I	probably benign	Het
Icos	C	T	1: 60,993,717	S25L	probably benign	Het
Ifna4	A	G	4: 88,841,948	T30A	probably benign	Het
Ino80b	C	T	6: 83,124,750	G46D	probably damaging	Het
Kpna2	T	G	11: 106,992,664	I100L	possibly damaging	Het
Krt71	C	T	15: 101,735,466	G446R	probably damaging	Het
Krtap31-2	A	G	11: 99,936,576	N78S	possibly damaging	Het
Lman1	A	G	18: 65,998,434	S132P	probably benign	Het
Lmna	T	C	3: 88,486,533	Q246R	possibly damaging	Het
Lrp10	T	A	14: 54,468,592	V413E	probably damaging	Het
Macf1	A	C	4: 123,471,650	I1541S	probably benign	Het
Med24	A	G	11: 98,706,432	L874P	probably damaging	Het
Mgll	T	A	6: 88,725,111		probably benign	Het
Mrpl37	A	T	4: 107,057,475	L364Q	probably damaging	Het
Mrpl47	C	T	3: 32,728,441	R209H	probably benign	Het
Muc5ac	T	C	7: 141,817,601	F3285L	probably benign	Het
Mylk	A	G	16: 34,879,169	R301G	probably benign	Het
Nacad	A	G	11: 6,605,726	L8P	unknown	Het
Ncf1	T	A	5: 134,229,545	H8L	probably damaging	Het
Necab2	C	T	8: 119,467,598	S271L	probably benign	Het
Nme8	A	T	13: 19,675,638		probably null	Het
Nsrp1	T	G	11: 77,076,719	T16P	possibly damaging	Het
Obox3	A	T	7: 15,625,692		probably null	Het
Olfr1211	T	A	2: 88,929,914	I134F	probably damaging	Het
Olfr1416	C	A	1: 92,479,983	A213S	probably benign	Het
Olfr1428	T	A	19: 12,109,177	Y123F	probably damaging	Het
Olfr355	T	C	2: 36,927,583	H177R	probably damaging	Het
Olfr667	A	T	7: 104,916,410	Y295*	probably null	Het
Osbpl3	C	G	6: 50,300,997	E790Q	possibly damaging	Het
Osmr	A	T	15: 6,842,852	W254R	probably damaging	Het
Otoa	T	C	7: 121,132,924		probably benign	Het
Pagr1a	A	T	7: 127,015,379	L218H	probably damaging	Het
Pcdha11	G	A	18: 37,006,944	G542D	probably damaging	Het
Pck2	T	A	14: 55,542,561	I54N	probably damaging	Het
Ppif	T	C	14: 25,699,499	V173A	probably damaging	Het
Ptgs2	T	A	1: 150,104,020	L292H	probably damaging	Het
Ptpru	A	G	4: 131,802,586	S604P	probably damaging	Het
Qrfpr	T	C	3: 36,182,622	H210R	possibly damaging	Het
Rasgrf1	A	G	9: 89,910,118	T41A	probably damaging	Het
Rasgrf1	A	G	9: 90,012,866	H1113R	probably damaging	Het
Rhoc	T	A	3: 104,792,647	I80N	probably damaging	Het
Riok3	A	G	18: 12,153,983	N472S	probably benign	Het
Rnf213	A	G	11: 119,445,745	Y3314C	probably benign	Het
Shank2	C	T	7: 144,409,468	T264I	probably damaging	Het
Shroom3	G	T	5: 92,943,086	V1151F	probably damaging	Het
Sipa1l1	A	G	12: 82,341,194	I65V	probably benign	Het
Slc22a19	T	C	19: 7,691,145	K291R	possibly damaging	Het
Slc22a20	T	C	19: 5,980,460	I315V	probably benign	Het
Slc44a1	A	T	4: 53,560,973	D563V	probably damaging	Het
Smchd1	A	T	17: 71,391,468	H1104Q	probably benign	Het
Spcs2	A	T	7: 99,844,769		probably null	Het
Sptb	T	C	12: 76,627,110	E301G	probably benign	Het
Stum	T	C	1: 180,442,669	D86G	probably damaging	Het
Sufu	A	T	19: 46,483,649	D449V	probably benign	Het
Sun5	T	C	2: 153,866,016		probably null	Het
Tbc1d15	T	A	10: 115,202,587	I574F	probably damaging	Het
Tert	G	A	13: 73,628,063	S311N	possibly damaging	Het
Tiparp	T	C	3: 65,552,804	Y507H	probably damaging	Het
Tnk2	T	C	16: 32,679,857	C158R	probably damaging	Het
Tpgs1	T	C	10: 79,675,620	S199P	possibly damaging	Het
Trdmt1	G	T	2: 13,544,653		probably benign	Het
Trp53bp1	T	A	2: 121,227,809	D944V	probably damaging	Het
Tsc1	T	A	2: 28,679,081	I720N	probably damaging	Het
Ttn	T	C	2: 76,709,605	T34346A	probably benign	Het
Ttn	T	C	2: 76,897,581		probably benign	Het
Uba7	T	A	9: 107,979,805	C686S	possibly damaging	Het
Ush2a	T	A	1: 188,850,087	F3782L	probably damaging	Het
Vars2	A	T	17: 35,659,343	H745Q	possibly damaging	Het
Vgf	T	A	5: 137,032,401	D472E	probably damaging	Het
Vmn2r15	T	C	5: 109,286,754	M695V	probably benign	Het
Vps41	A	T	13: 18,811,622	D208V	probably damaging	Het
Vta1	C	T	10: 14,655,816	A272T	probably benign	Het
Wnk4	G	A	11: 101,276,362		probably benign	Het
Zfp507	T	C	7: 35,794,382	K412R	probably damaging	Het
Zfp768	A	G	7: 127,344,762	F65L	possibly damaging	Het
Zfp956	T	C	6: 47,963,576	S290P	probably benign	Het

Other mutations in Ncoa3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00929:Ncoa3	APN	2	166051609	splice site	probably null
IGL01068:Ncoa3	APN	2	166052795	missense	probably damaging	1.00
IGL01300:Ncoa3	APN	2	166068461	missense	probably benign	0.41
IGL01336:Ncoa3	APN	2	166054523	missense	probably benign
IGL01533:Ncoa3	APN	2	166055025	missense	probably benign	0.03
IGL01658:Ncoa3	APN	2	166051302	splice site	probably benign
IGL02053:Ncoa3	APN	2	166054834	missense	probably damaging	1.00
IGL02138:Ncoa3	APN	2	166055262	missense	probably benign
IGL02167:Ncoa3	APN	2	166070136	missense	probably damaging	1.00
IGL02217:Ncoa3	APN	2	166055346	missense	probably damaging	1.00
IGL02312:Ncoa3	APN	2	166057200	missense	probably benign	0.10
IGL02381:Ncoa3	APN	2	166052817	missense	probably damaging	1.00
IGL02568:Ncoa3	APN	2	166069357	missense	probably damaging	1.00
IGL02658:Ncoa3	APN	2	166051393	missense	probably benign	0.01
IGL02806:Ncoa3	APN	2	166052432	missense	probably benign	0.25
R0054:Ncoa3	UTSW	2	166055178	missense	possibly damaging	0.67
R0054:Ncoa3	UTSW	2	166055178	missense	possibly damaging	0.67
R0240:Ncoa3	UTSW	2	166054400	missense	probably benign
R0240:Ncoa3	UTSW	2	166054400	missense	probably benign
R0333:Ncoa3	UTSW	2	166054291	missense	probably damaging	1.00
R0379:Ncoa3	UTSW	2	166054502	missense	probably damaging	0.97
R0411:Ncoa3	UTSW	2	166068543	missense	probably benign	0.31
R0734:Ncoa3	UTSW	2	166069191	unclassified	probably benign
R1434:Ncoa3	UTSW	2	166055510	missense	probably benign	0.01
R1491:Ncoa3	UTSW	2	166055262	missense	probably benign
R1721:Ncoa3	UTSW	2	166069301	missense	possibly damaging	0.55
R1895:Ncoa3	UTSW	2	166059177	missense	possibly damaging	0.68
R1896:Ncoa3	UTSW	2	166048464	missense	probably benign	0.36
R1946:Ncoa3	UTSW	2	166059177	missense	possibly damaging	0.68
R2406:Ncoa3	UTSW	2	166055359	missense	probably damaging	1.00
R3800:Ncoa3	UTSW	2	166059719	missense	possibly damaging	0.58
R3825:Ncoa3	UTSW	2	166054798	missense	possibly damaging	0.83
R4377:Ncoa3	UTSW	2	166054497	missense	possibly damaging	0.50
R4674:Ncoa3	UTSW	2	166059811	missense	probably benign
R4706:Ncoa3	UTSW	2	166047879	missense	probably damaging	1.00
R4954:Ncoa3	UTSW	2	166065786	missense	probably benign
R4976:Ncoa3	UTSW	2	166047900	missense	probably damaging	1.00
R4992:Ncoa3	UTSW	2	166069939	missense	probably benign	0.39
R5100:Ncoa3	UTSW	2	166050097	missense	probably damaging	1.00
R5578:Ncoa3	UTSW	2	166054328	missense	probably benign	0.00
R5932:Ncoa3	UTSW	2	166070125	splice site	probably null
R6051:Ncoa3	UTSW	2	166058765	missense	probably damaging	1.00
R6370:Ncoa3	UTSW	2	166065905	missense	probably benign	0.00
R6372:Ncoa3	UTSW	2	166059347	missense	possibly damaging	0.94
R6373:Ncoa3	UTSW	2	166059347	missense	possibly damaging	0.94
R7438:Ncoa3	UTSW	2	166068529	missense	probably damaging	1.00
R7660:Ncoa3	UTSW	2	166069321	missense	probably benign	0.00
R7738:Ncoa3	UTSW	2	166050067	missense	probably damaging	1.00
R7752:Ncoa3	UTSW	2	166065768	nonsense	probably null
R7970:Ncoa3	UTSW	2	166051357	missense	probably benign	0.01
R8829:Ncoa3	UTSW	2	166050148	missense	probably damaging	1.00
R9133:Ncoa3	UTSW	2	166068461	missense	possibly damaging	0.92
R9625:Ncoa3	UTSW	2	166057210	missense	probably benign
X0018:Ncoa3	UTSW	2	166054802	missense	possibly damaging	0.58
Z1177:Ncoa3	UTSW	2	166048508	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCTGCTCAGGTAGAGGGATG -3'
(R):5'- AGGGAGATGTCAGCAGTATTTCTG -3'

Sequencing Primer
(F):5'- GATGTTTGATAGAACTGTGAGAGTC -3'
(R):5'- GAAAATCGGCCACTGTCTGTAC -3'

Posted On

2015-11-11