Mutagenetix > Incidental Mutation

Incidental Mutation 'R4755:Slc5a4a'

357933

Institutional Source

Beutler Lab

Gene Symbol

Slc5a4a

Ensembl Gene

ENSMUSG00000020229

Gene Name

solute carrier family 5, member 4a

Synonyms

MMRRC Submission

042033-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.092) question?

Stock #

R4755 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

76147451-76189265 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 76186564 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamine at position 578 (K578Q)

Ref Sequence

ENSEMBL: ENSMUSP00000020450 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020450]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000020450
AA Change: K578Q

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

SMART Domains

Protein: ENSMUSP00000020450
Gene: ENSMUSG00000020229
AA Change: K578Q

Domain	Start	End	E-Value	Type
transmembrane domain	26	48	N/A	INTRINSIC
Pfam:SSF	58	492	4e-161	PFAM
transmembrane domain	526	548	N/A	INTRINSIC
transmembrane domain	636	655	N/A	INTRINSIC

Meta Mutation Damage Score

0.1074

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.3%
20x: 95.3%

Validation Efficiency

96% (112/117)

Allele List at MGI

Other mutations in this stock

Total: 113 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930449A18Rik	T	A	3: 59,825,859 (GRCm38)		noncoding transcript	Het
Accs	T	C	2: 93,841,337 (GRCm38)	E236G	probably damaging	Het
Agrn	C	T	4: 156,173,522 (GRCm38)		probably benign	Het
Ahi1	A	G	10: 21,055,047 (GRCm38)	I929V	possibly damaging	Het
Akap5	C	A	12: 76,327,807 (GRCm38)	C4*	probably null	Het
Amotl2	A	T	9: 102,720,480 (GRCm38)	H146L	probably damaging	Het
Ank1	A	G	8: 23,104,974 (GRCm38)	N666S	probably damaging	Het
Atp10d	A	T	5: 72,246,166 (GRCm38)	T373S	probably benign	Het
Bpifb9b	T	A	2: 154,319,694 (GRCm38)	M582K	probably benign	Het
Brca2	T	A	5: 150,559,987 (GRCm38)		probably null	Het
C130079G13Rik	C	T	3: 59,936,314 (GRCm38)	A143V	probably benign	Het
C330021F23Rik	A	T	8: 3,583,922 (GRCm38)	S8C	probably damaging	Het
Ccdc149	A	G	5: 52,404,151 (GRCm38)	V229A	probably damaging	Het
Cd109	CATTTATTTATTTATTTATTTATTTATTTATTTAT	CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT	9: 78,712,500 (GRCm38)		probably benign	Het
Cdk5rap2	A	G	4: 70,238,425 (GRCm38)	S1617P	probably damaging	Het
Cenpk	A	T	13: 104,230,871 (GRCm38)	M37L	probably benign	Het
Cenpk	A	T	13: 104,249,512 (GRCm38)	H305L	probably benign	Het
Ces5a	C	A	8: 93,535,677 (GRCm38)	A11S	probably benign	Het
Cfap65	T	C	1: 74,928,361 (GRCm38)	E186G	probably damaging	Het
Cfh	T	A	1: 140,088,808 (GRCm38)	I593F	probably damaging	Het
Clstn2	C	T	9: 97,445,673 (GRCm38)	V961I	probably benign	Het
Cog5	T	A	12: 31,869,406 (GRCm38)		probably null	Het
Col4a4	T	C	1: 82,541,174 (GRCm38)	D100G	unknown	Het
Cyp3a41a	T	C	5: 145,715,506 (GRCm38)	D61G	probably damaging	Het
Dnah10	A	G	5: 124,747,745 (GRCm38)	N655S	probably benign	Het
Dnaic1	C	G	4: 41,610,269 (GRCm38)	T295R	probably damaging	Het
Dnajc6	C	T	4: 101,550,799 (GRCm38)	A44V	probably damaging	Het
Eif4enif1	A	T	11: 3,244,016 (GRCm38)	D960V	probably damaging	Het
Fam167b	C	T	4: 129,578,342 (GRCm38)	G12R	probably damaging	Het
Fam20b	A	T	1: 156,687,496 (GRCm38)	Y266*	probably null	Het
Fer1l6	T	A	15: 58,640,211 (GRCm38)	V1509D	probably benign	Het
Fhad1	A	T	4: 141,928,483 (GRCm38)	I105N	probably damaging	Het
Fmo2	T	C	1: 162,888,805 (GRCm38)	D71G	probably damaging	Het
Folr2	T	C	7: 101,843,799 (GRCm38)	T6A	possibly damaging	Het
Fry	A	C	5: 150,398,254 (GRCm38)	E1018A	probably damaging	Het
Gas2l2	A	G	11: 83,429,367 (GRCm38)	I21T	probably damaging	Het
Gfra1	T	C	19: 58,453,244 (GRCm38)	Y85C	probably damaging	Het
Gm9117	T	C	3: 93,938,786 (GRCm38)		probably null	Het
Gpld1	T	A	13: 24,979,692 (GRCm38)	Y44*	probably null	Het
Gpld1	A	T	13: 24,979,688 (GRCm38)	Y43F	probably benign	Het
Grid2	A	G	6: 63,908,988 (GRCm38)	T123A	probably benign	Het
Grina	T	C	15: 76,249,242 (GRCm38)	L305P	probably damaging	Het
Gucy1a1	G	A	3: 82,094,795 (GRCm38)	A659V	probably benign	Het
H2-T10	T	A	17: 36,118,945 (GRCm38)	K319*	probably null	Het
Hey2	A	T	10: 30,834,304 (GRCm38)	V151E	probably benign	Het
Ighv1-69	G	A	12: 115,623,558 (GRCm38)	T13I	probably benign	Het
Il1rap	C	A	16: 26,722,782 (GRCm38)	A591E	probably benign	Het
Ildr1	T	C	16: 36,722,021 (GRCm38)	L261P	probably benign	Het
Jak1	A	G	4: 101,174,157 (GRCm38)	Y463H	probably damaging	Het
Lrp1b	T	A	2: 41,471,016 (GRCm38)	T592S	probably benign	Het
Lrp1b	T	C	2: 41,269,273 (GRCm38)	I1666V	probably benign	Het
Lrrc36	A	G	8: 105,452,144 (GRCm38)	T445A	possibly damaging	Het
Ly9	G	A	1: 171,607,238 (GRCm38)	S29F	probably damaging	Het
Mapk7	A	C	11: 61,490,843 (GRCm38)	C32W	probably damaging	Het
March10	C	T	11: 105,364,476 (GRCm38)		probably benign	Het
Mier2	A	T	10: 79,549,197 (GRCm38)	M119K	probably damaging	Het
Mpv17	A	T	5: 31,145,982 (GRCm38)	C59*	probably null	Het
Mrpl27	G	A	11: 94,653,833 (GRCm38)		probably benign	Het
Myo18b	G	A	5: 112,874,474 (GRCm38)	Q351*	probably null	Het
Myo1a	A	G	10: 127,715,688 (GRCm38)	I704M	probably damaging	Het
Nadsyn1	A	G	7: 143,806,913 (GRCm38)	C373R	probably damaging	Het
Nckipsd	C	A	9: 108,814,739 (GRCm38)	A513E	probably benign	Het
Neb	T	C	2: 52,220,209 (GRCm38)	D209G	probably damaging	Het
Nkapl	T	A	13: 21,468,287 (GRCm38)	Q52L	unknown	Het
Nptx2	G	A	5: 144,546,440 (GRCm38)	S126N	probably benign	Het
Olfr13	G	A	6: 43,174,043 (GRCm38)	S19N	probably benign	Het
Olfr653	T	A	7: 104,580,061 (GRCm38)	Y138*	probably null	Het
Olfr829	A	T	9: 18,857,180 (GRCm38)	H185L	probably benign	Het
Olfr917	A	G	9: 38,665,832 (GRCm38)	V4A	probably benign	Het
Pclo	A	T	5: 14,714,348 (GRCm38)	R4278S	unknown	Het
Pcnx	T	G	12: 81,950,294 (GRCm38)	L988R	probably damaging	Het
Prl2c5	C	A	13: 13,189,385 (GRCm38)	N75K	probably benign	Het
Prpf19	T	G	19: 10,897,790 (GRCm38)		probably benign	Het
Ralgapa1	A	G	12: 55,712,748 (GRCm38)	S997P	probably damaging	Het
Rangap1	T	C	15: 81,712,917 (GRCm38)	T226A	probably benign	Het
Rimklb	G	A	6: 122,456,406 (GRCm38)	L262F	probably damaging	Het
Rnf169	A	G	7: 99,925,723 (GRCm38)	M555T	probably benign	Het
Rp1l1	A	T	14: 64,030,070 (GRCm38)	D1035V	probably benign	Het
Scd2	T	A	19: 44,301,352 (GRCm38)	L262Q	probably damaging	Het
Scgb2b12	T	A	7: 32,325,531 (GRCm38)	M84L	probably benign	Het
Shroom3	G	T	5: 92,943,086 (GRCm38)	V1151F	probably damaging	Het
Sipa1l1	G	A	12: 82,372,386 (GRCm38)	V613I	possibly damaging	Het
Slc25a23	T	A	17: 57,052,794 (GRCm38)	D67V	possibly damaging	Het
Slc25a39	C	T	11: 102,406,666 (GRCm38)		probably benign	Het
Slc4a10	T	A	2: 62,296,988 (GRCm38)	F895Y	probably damaging	Het
Slc6a13	G	A	6: 121,325,049 (GRCm38)	G197S	probably damaging	Het
Smarca2	A	T	19: 26,654,483 (GRCm38)	E566V	possibly damaging	Het
Sorbs3	A	T	14: 70,184,099 (GRCm38)	N594K	probably benign	Het
Spata22	A	T	11: 73,345,756 (GRCm38)	D296V	probably damaging	Het
Sphk2	G	A	7: 45,713,634 (GRCm38)	A11V	possibly damaging	Het
Spp1	A	T	5: 104,435,215 (GRCm38)		probably benign	Het
Strn3	T	A	12: 51,610,216 (GRCm38)	I760L	possibly damaging	Het
Syk	A	T	13: 52,641,986 (GRCm38)	Y539F	probably benign	Het
Thsd7b	T	A	1: 130,210,264 (GRCm38)	Y1560N	probably benign	Het
Tmod2	C	A	9: 75,597,212 (GRCm38)	E42*	probably null	Het
Tom1l1	T	C	11: 90,685,116 (GRCm38)	E30G	probably damaging	Het
Trav10	G	A	14: 53,506,061 (GRCm38)	A40T	probably benign	Het
Trav14-2	G	A	14: 53,640,780 (GRCm38)		probably benign	Het
Tril	T	A	6: 53,818,464 (GRCm38)	E591V	probably damaging	Het
Trp53bp1	T	A	2: 121,228,606 (GRCm38)	R179*	probably null	Het
Tspoap1	A	T	11: 87,771,663 (GRCm38)	D562V	possibly damaging	Het
Usp44	A	T	10: 93,846,906 (GRCm38)	H406L	probably damaging	Het
Vangl1	A	G	3: 102,158,292 (GRCm38)	I509T	probably benign	Het
Vax2	T	G	6: 83,711,397 (GRCm38)	L34W	probably damaging	Het
Vmn1r55	A	T	7: 5,147,026 (GRCm38)	C133S	probably damaging	Het
Vmn2r8	T	A	5: 108,801,700 (GRCm38)	D427V	probably benign	Het
Vwde	A	G	6: 13,205,852 (GRCm38)	I232T	possibly damaging	Het
Wnk1	C	A	6: 119,963,470 (GRCm38)	A769S	probably damaging	Het
Xpo4	A	C	14: 57,618,181 (GRCm38)	S264A	probably benign	Het
Zfp330	A	T	8: 82,769,386 (GRCm38)	C75*	probably null	Het
Zfp526	T	A	7: 25,225,639 (GRCm38)	L441Q	probably benign	Het
Zfp607b	T	G	7: 27,703,505 (GRCm38)	L462R	probably damaging	Het
Zfp719	T	A	7: 43,590,793 (GRCm38)	F602I	probably damaging	Het

Other mutations in Slc5a4a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00670:Slc5a4a	APN	10	76,163,733 (GRCm38)	missense	probably damaging	1.00
IGL01725:Slc5a4a	APN	10	76,181,674 (GRCm38)	missense	probably benign	0.00
IGL02629:Slc5a4a	APN	10	76,147,579 (GRCm38)	missense	unknown
IGL02976:Slc5a4a	APN	10	76,170,693 (GRCm38)	missense	possibly damaging	0.67
IGL03255:Slc5a4a	APN	10	76,150,512 (GRCm38)	missense	probably damaging	1.00
IGL03258:Slc5a4a	APN	10	76,150,552 (GRCm38)	missense	possibly damaging	0.81
R0054:Slc5a4a	UTSW	10	76,178,197 (GRCm38)	missense	probably null	0.00
R0244:Slc5a4a	UTSW	10	76,189,152 (GRCm38)	missense	possibly damaging	0.46
R0398:Slc5a4a	UTSW	10	76,182,722 (GRCm38)	missense	possibly damaging	0.46
R0799:Slc5a4a	UTSW	10	76,176,534 (GRCm38)	missense	probably benign	0.00
R1160:Slc5a4a	UTSW	10	76,178,161 (GRCm38)	missense	possibly damaging	0.52
R1471:Slc5a4a	UTSW	10	76,186,528 (GRCm38)	missense	probably damaging	0.99
R1720:Slc5a4a	UTSW	10	76,189,269 (GRCm38)	splice site	probably null
R1857:Slc5a4a	UTSW	10	76,166,735 (GRCm38)	missense	probably benign	0.27
R1858:Slc5a4a	UTSW	10	76,166,735 (GRCm38)	missense	probably benign	0.27
R1859:Slc5a4a	UTSW	10	76,166,735 (GRCm38)	missense	probably benign	0.27
R1942:Slc5a4a	UTSW	10	76,147,588 (GRCm38)	missense	unknown
R2016:Slc5a4a	UTSW	10	76,153,580 (GRCm38)	missense	probably benign	0.00
R2316:Slc5a4a	UTSW	10	76,178,081 (GRCm38)	splice site	probably null
R3420:Slc5a4a	UTSW	10	76,176,573 (GRCm38)	missense	probably benign	0.00
R3421:Slc5a4a	UTSW	10	76,176,573 (GRCm38)	missense	probably benign	0.00
R3422:Slc5a4a	UTSW	10	76,176,573 (GRCm38)	missense	probably benign	0.00
R3845:Slc5a4a	UTSW	10	76,189,149 (GRCm38)	missense	probably damaging	0.99
R3874:Slc5a4a	UTSW	10	76,181,655 (GRCm38)	missense	probably benign	0.42
R4523:Slc5a4a	UTSW	10	76,148,362 (GRCm38)	missense	probably damaging	0.99
R4537:Slc5a4a	UTSW	10	76,178,095 (GRCm38)	nonsense	probably null
R4538:Slc5a4a	UTSW	10	76,178,095 (GRCm38)	nonsense	probably null
R4868:Slc5a4a	UTSW	10	76,178,231 (GRCm38)	missense	probably damaging	0.98
R5135:Slc5a4a	UTSW	10	76,147,594 (GRCm38)	missense	unknown
R5254:Slc5a4a	UTSW	10	76,182,738 (GRCm38)	nonsense	probably null
R6083:Slc5a4a	UTSW	10	76,147,597 (GRCm38)	missense	unknown
R6331:Slc5a4a	UTSW	10	76,178,200 (GRCm38)	missense	probably damaging	0.98
R7591:Slc5a4a	UTSW	10	76,147,667 (GRCm38)	critical splice donor site	probably benign
R7671:Slc5a4a	UTSW	10	76,147,550 (GRCm38)	missense	unknown
R8785:Slc5a4a	UTSW	10	76,150,404 (GRCm38)	critical splice acceptor site	probably benign
R8929:Slc5a4a	UTSW	10	76,170,783 (GRCm38)	missense	probably benign	0.27
R8993:Slc5a4a	UTSW	10	76,186,535 (GRCm38)	missense	probably benign	0.15
R9018:Slc5a4a	UTSW	10	76,166,712 (GRCm38)	missense	possibly damaging	0.67
R9474:Slc5a4a	UTSW	10	76,150,404 (GRCm38)	critical splice acceptor site	probably benign
R9567:Slc5a4a	UTSW	10	76,186,562 (GRCm38)	missense	probably benign	0.08
R9648:Slc5a4a	UTSW	10	76,166,774 (GRCm38)	missense	probably damaging	1.00
Z1177:Slc5a4a	UTSW	10	76,182,847 (GRCm38)	nonsense	probably null
Z1177:Slc5a4a	UTSW	10	76,166,744 (GRCm38)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- ATAATACTCTTCCGTGCAGCCTG -3'
(R):5'- AGCAGGCTGTATTGATATACTTGTG -3'

Sequencing Primer
(F):5'- TTTGCTAATGCTCTCTGTG -3'
(R):5'- AGGCTGTAATTCATGGGAGGG -3'

Posted On

2015-11-11