Incidental Mutation 'R4737:Vmn2r4'
ID 359319
Institutional Source Beutler Lab
Gene Symbol Vmn2r4
Ensembl Gene ENSMUSG00000092049
Gene Name vomeronasal 2, receptor 4
Synonyms EG637053
MMRRC Submission 042024-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.068) question?
Stock # R4737 (G1)
Quality Score 225
Status Validated
Chromosome 3
Chromosomal Location 64295982-64322741 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 64317384 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 118 (D118G)
Ref Sequence ENSEMBL: ENSMUSP00000135228 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000170280] [ENSMUST00000175724]
AlphaFold K7N784
Predicted Effect probably damaging
Transcript: ENSMUST00000170280
AA Change: D29G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000127513
Gene: ENSMUSG00000092049
AA Change: D29G

DomainStartEndE-ValueType
Pfam:ANF_receptor 1 416 2.7e-72 PFAM
Pfam:Peripla_BP_6 61 240 1.9e-9 PFAM
Pfam:NCD3G 458 511 1.1e-17 PFAM
Pfam:7tm_3 542 779 1.8e-75 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000175724
AA Change: D118G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000135228
Gene: ENSMUSG00000092049
AA Change: D118G

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
Pfam:ANF_receptor 88 505 2.3e-75 PFAM
Pfam:NCD3G 547 600 4.7e-17 PFAM
Pfam:7tm_3 633 867 8.2e-47 PFAM
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 95.3%
Validation Efficiency 100% (94/94)
Allele List at MGI
Other mutations in this stock
Total: 88 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A430110L20Rik A G 1: 181,055,384 (GRCm39) noncoding transcript Het
Acp2 A T 2: 91,041,068 (GRCm39) R419W probably benign Het
Actr5 A G 2: 158,469,991 (GRCm39) N207S probably damaging Het
Afap1 G A 5: 36,119,126 (GRCm39) V254M probably benign Het
Arfgef1 A T 1: 10,259,836 (GRCm39) M544K possibly damaging Het
Arhgap5 A T 12: 52,565,860 (GRCm39) M944L probably benign Het
Bnip3l-ps G A 12: 18,266,773 (GRCm39) noncoding transcript Het
Carf A G 1: 60,148,477 (GRCm39) T58A probably benign Het
Carns1 A G 19: 4,220,927 (GRCm39) probably benign Het
Ccp110 T A 7: 118,323,771 (GRCm39) I670K possibly damaging Het
Cftr T A 6: 18,299,882 (GRCm39) D1218E probably benign Het
Chrna9 A T 5: 66,125,214 (GRCm39) T52S probably damaging Het
Chst9 T C 18: 15,585,834 (GRCm39) Y243C probably damaging Het
Ciao3 A T 17: 26,000,283 (GRCm39) H322L probably damaging Het
Cilk1 A G 9: 78,057,936 (GRCm39) T162A probably damaging Het
Clk2 A T 3: 89,076,016 (GRCm39) H62L probably benign Het
Cntnap2 A T 6: 45,037,251 (GRCm39) R10W possibly damaging Het
Cpt1b C T 15: 89,305,609 (GRCm39) D369N probably benign Het
Crhr2 G T 6: 55,068,290 (GRCm39) H423Q probably damaging Het
D8Ertd738e T A 8: 84,976,150 (GRCm39) I33F probably damaging Het
Dbt T C 3: 116,332,781 (GRCm39) I200T probably damaging Het
Ddhd1 A T 14: 45,866,278 (GRCm39) probably benign Het
Ddx27 A G 2: 166,871,219 (GRCm39) I480V probably benign Het
Dpp9 A C 17: 56,505,970 (GRCm39) probably null Het
Dpy19l3 A T 7: 35,402,926 (GRCm39) M562K probably damaging Het
Dus3l T C 17: 57,074,868 (GRCm39) L330P probably damaging Het
Efcab7 C T 4: 99,719,805 (GRCm39) Q96* probably null Het
Egfr T C 11: 16,819,231 (GRCm39) F254L probably damaging Het
Eml5 C T 12: 98,765,111 (GRCm39) V1566M probably damaging Het
Entpd7 T A 19: 43,679,634 (GRCm39) Y62* probably null Het
Erbb4 T C 1: 68,383,059 (GRCm39) M313V probably damaging Het
Gm5528 A G 1: 72,043,711 (GRCm39) noncoding transcript Het
H2-M9 G T 17: 36,951,631 (GRCm39) Y281* probably null Het
Hmcn1 T G 1: 150,565,346 (GRCm39) K2260N possibly damaging Het
Hnf4a A G 2: 163,406,139 (GRCm39) I259V probably benign Het
Insm1 A T 2: 146,064,822 (GRCm39) T213S probably benign Het
Iqca1 T C 1: 90,005,544 (GRCm39) D488G probably damaging Het
Kdm5a T A 6: 120,382,976 (GRCm39) probably benign Het
Kdm7a G C 6: 39,129,773 (GRCm39) L468V possibly damaging Het
Lck G A 4: 129,449,777 (GRCm39) T229I possibly damaging Het
Lig3 T C 11: 82,678,553 (GRCm39) L265P probably damaging Het
Lipa T A 19: 34,479,034 (GRCm39) K229* probably null Het
Lrrk1 C T 7: 65,956,621 (GRCm39) S418N probably benign Het
Mark2 A G 19: 7,258,597 (GRCm39) V126A probably damaging Het
Met T C 6: 17,491,540 (GRCm39) C101R probably damaging Het
Mkln1 A T 6: 31,403,734 (GRCm39) K85M probably damaging Het
Mst1 A G 9: 107,957,720 (GRCm39) R15G probably benign Het
Muc6 T G 7: 141,226,426 (GRCm39) probably benign Het
Muc6 G T 7: 141,218,685 (GRCm39) T1996N possibly damaging Het
Myo7b T C 18: 32,131,655 (GRCm39) S514G probably damaging Het
Nars1 T C 18: 64,649,498 (GRCm39) E11G probably benign Het
Ogdh T A 11: 6,247,044 (GRCm39) F23I probably benign Het
Or10g9 A T 9: 39,911,718 (GRCm39) D268E probably damaging Het
Or12e9 T C 2: 87,202,665 (GRCm39) I263T probably damaging Het
Or4a39 C T 2: 89,236,830 (GRCm39) V198I probably benign Het
Or4b1b A G 2: 90,112,725 (GRCm39) S65P probably damaging Het
Or4c100 C T 2: 88,356,569 (GRCm39) S214F probably damaging Het
Or52r1c C T 7: 102,735,121 (GRCm39) A127V probably damaging Het
Or9k2 T A 10: 129,998,707 (GRCm39) T163S probably benign Het
Otub2 T A 12: 103,359,103 (GRCm39) L64Q probably benign Het
Pappa2 T C 1: 158,784,582 (GRCm39) R143G probably benign Het
Patl2 T A 2: 121,955,787 (GRCm39) T250S probably damaging Het
Pcdhac2 C T 18: 37,278,952 (GRCm39) T644I possibly damaging Het
Pi4kb C T 3: 94,911,649 (GRCm39) T690I probably damaging Het
Pla2g4d T C 2: 120,097,271 (GRCm39) Y776C probably benign Het
Plekhh2 C T 17: 84,871,387 (GRCm39) S215L probably benign Het
Psmd2 T G 16: 20,478,565 (GRCm39) probably benign Het
Ptpn21 T C 12: 98,675,103 (GRCm39) E183G probably benign Het
Ptprg T A 14: 12,226,314 (GRCm38) D527E probably damaging Het
Rhobtb1 T A 10: 69,115,327 (GRCm39) probably null Het
Scel T A 14: 103,809,473 (GRCm39) M271K possibly damaging Het
Senp3 A T 11: 69,569,655 (GRCm39) C310* probably null Het
Slc25a3 T C 10: 90,958,050 (GRCm39) T97A possibly damaging Het
Srsf11 A T 3: 157,732,369 (GRCm39) Y82* probably null Het
Tbc1d8 G A 1: 39,441,959 (GRCm39) T211I possibly damaging Het
Tbkbp1 T C 11: 97,039,474 (GRCm39) E145G probably damaging Het
Tln1 T C 4: 43,540,588 (GRCm39) N1471S probably benign Het
Tnn T G 1: 159,973,659 (GRCm39) D236A probably damaging Het
Trmt2a C T 16: 18,069,150 (GRCm39) probably benign Het
Ttn A T 2: 76,641,587 (GRCm39) L5176Q possibly damaging Het
Ubxn10 G A 4: 138,463,259 (GRCm39) probably benign Het
Ulk4 G A 9: 120,902,938 (GRCm39) Q1180* probably null Het
Usp43 T A 11: 67,746,331 (GRCm39) K1120N probably damaging Het
Uspl1 T A 5: 149,131,149 (GRCm39) L244Q possibly damaging Het
Vmn1r32 T C 6: 66,530,629 (GRCm39) H49R probably damaging Het
Vwce A G 19: 10,627,943 (GRCm39) I468V probably benign Het
Zbtb7c G T 18: 76,279,225 (GRCm39) R561L probably benign Het
Zfp956 T C 6: 47,939,476 (GRCm39) S175P probably damaging Het
Other mutations in Vmn2r4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01310:Vmn2r4 APN 3 64,317,200 (GRCm39) splice site probably null
IGL01448:Vmn2r4 APN 3 64,313,816 (GRCm39) missense probably damaging 0.99
IGL01452:Vmn2r4 APN 3 64,313,816 (GRCm39) missense probably damaging 0.99
IGL01454:Vmn2r4 APN 3 64,313,816 (GRCm39) missense probably damaging 0.99
IGL01456:Vmn2r4 APN 3 64,313,816 (GRCm39) missense probably damaging 0.99
IGL01463:Vmn2r4 APN 3 64,313,816 (GRCm39) missense probably damaging 0.99
IGL01467:Vmn2r4 APN 3 64,313,816 (GRCm39) missense probably damaging 0.99
IGL01468:Vmn2r4 APN 3 64,313,816 (GRCm39) missense probably damaging 0.99
IGL01470:Vmn2r4 APN 3 64,313,816 (GRCm39) missense probably damaging 0.99
IGL01476:Vmn2r4 APN 3 64,313,816 (GRCm39) missense probably damaging 0.99
IGL01481:Vmn2r4 APN 3 64,313,816 (GRCm39) missense probably damaging 0.99
IGL01534:Vmn2r4 APN 3 64,313,844 (GRCm39) missense probably damaging 1.00
IGL01636:Vmn2r4 APN 3 64,313,657 (GRCm39) missense probably benign 0.21
IGL01879:Vmn2r4 APN 3 64,298,431 (GRCm39) missense probably damaging 1.00
IGL02147:Vmn2r4 APN 3 64,305,782 (GRCm39) splice site probably benign
IGL02276:Vmn2r4 APN 3 64,313,877 (GRCm39) missense possibly damaging 0.95
IGL02432:Vmn2r4 APN 3 64,313,821 (GRCm39) missense probably benign 0.38
IGL02533:Vmn2r4 APN 3 64,305,840 (GRCm39) nonsense probably null
IGL02655:Vmn2r4 APN 3 64,305,886 (GRCm39) missense probably damaging 0.97
IGL02666:Vmn2r4 APN 3 64,296,433 (GRCm39) missense probably benign 0.10
IGL02902:Vmn2r4 APN 3 64,314,337 (GRCm39) missense probably benign 0.22
IGL03189:Vmn2r4 APN 3 64,296,589 (GRCm39) missense possibly damaging 0.89
IGL03250:Vmn2r4 APN 3 64,314,063 (GRCm39) missense probably damaging 1.00
IGL03271:Vmn2r4 APN 3 64,305,850 (GRCm39) missense probably benign 0.01
R0310:Vmn2r4 UTSW 3 64,296,855 (GRCm39) nonsense probably null
R0504:Vmn2r4 UTSW 3 64,296,784 (GRCm39) missense probably damaging 1.00
R1546:Vmn2r4 UTSW 3 64,314,309 (GRCm39) missense probably damaging 1.00
R1562:Vmn2r4 UTSW 3 64,296,865 (GRCm39) missense probably damaging 0.98
R1863:Vmn2r4 UTSW 3 64,314,410 (GRCm39) missense probably benign 0.33
R1873:Vmn2r4 UTSW 3 64,298,479 (GRCm39) missense possibly damaging 0.93
R1939:Vmn2r4 UTSW 3 64,305,976 (GRCm39) missense probably benign 0.00
R2103:Vmn2r4 UTSW 3 64,322,704 (GRCm39) missense possibly damaging 0.48
R3083:Vmn2r4 UTSW 3 64,296,788 (GRCm39) missense probably damaging 1.00
R3687:Vmn2r4 UTSW 3 64,296,896 (GRCm39) missense possibly damaging 0.93
R3707:Vmn2r4 UTSW 3 64,296,895 (GRCm39) missense probably damaging 0.99
R3963:Vmn2r4 UTSW 3 64,322,572 (GRCm39) missense probably damaging 0.99
R4428:Vmn2r4 UTSW 3 64,322,590 (GRCm39) missense probably damaging 1.00
R4710:Vmn2r4 UTSW 3 64,317,201 (GRCm39) critical splice donor site probably null
R4767:Vmn2r4 UTSW 3 64,298,397 (GRCm39) missense probably damaging 0.99
R4776:Vmn2r4 UTSW 3 64,296,082 (GRCm39) missense probably damaging 0.96
R4834:Vmn2r4 UTSW 3 64,317,484 (GRCm39) missense probably benign 0.40
R4893:Vmn2r4 UTSW 3 64,313,676 (GRCm39) missense probably damaging 0.96
R4908:Vmn2r4 UTSW 3 64,296,476 (GRCm39) missense possibly damaging 0.59
R5049:Vmn2r4 UTSW 3 64,306,019 (GRCm39) splice site probably null
R5092:Vmn2r4 UTSW 3 64,298,373 (GRCm39) missense probably benign 0.01
R5234:Vmn2r4 UTSW 3 64,305,878 (GRCm39) missense possibly damaging 0.88
R5240:Vmn2r4 UTSW 3 64,314,358 (GRCm39) missense possibly damaging 0.53
R5704:Vmn2r4 UTSW 3 64,317,370 (GRCm39) missense probably benign 0.03
R5897:Vmn2r4 UTSW 3 64,322,687 (GRCm39) nonsense probably null
R5907:Vmn2r4 UTSW 3 64,298,487 (GRCm39) missense probably damaging 0.99
R5924:Vmn2r4 UTSW 3 64,296,685 (GRCm39) missense probably damaging 1.00
R6145:Vmn2r4 UTSW 3 64,314,364 (GRCm39) missense probably benign 0.00
R6191:Vmn2r4 UTSW 3 64,322,702 (GRCm39) missense probably benign 0.34
R6192:Vmn2r4 UTSW 3 64,322,699 (GRCm39) missense probably benign 0.00
R6207:Vmn2r4 UTSW 3 64,313,926 (GRCm39) missense probably damaging 1.00
R6457:Vmn2r4 UTSW 3 64,317,378 (GRCm39) missense probably damaging 1.00
R6533:Vmn2r4 UTSW 3 64,322,519 (GRCm39) missense probably benign
R6545:Vmn2r4 UTSW 3 64,313,777 (GRCm39) missense possibly damaging 0.50
R6594:Vmn2r4 UTSW 3 64,296,731 (GRCm39) missense probably damaging 1.00
R7049:Vmn2r4 UTSW 3 64,296,550 (GRCm39) missense probably benign 0.14
R7150:Vmn2r4 UTSW 3 64,305,898 (GRCm39) missense probably benign 0.01
R7187:Vmn2r4 UTSW 3 64,322,681 (GRCm39) missense probably benign 0.00
R7363:Vmn2r4 UTSW 3 64,314,432 (GRCm39) missense probably damaging 1.00
R7477:Vmn2r4 UTSW 3 64,305,850 (GRCm39) missense probably benign 0.01
R7675:Vmn2r4 UTSW 3 64,322,657 (GRCm39) missense probably benign 0.01
R7858:Vmn2r4 UTSW 3 64,317,226 (GRCm39) missense probably benign 0.00
R7888:Vmn2r4 UTSW 3 64,313,943 (GRCm39) missense probably damaging 0.99
R8678:Vmn2r4 UTSW 3 64,314,391 (GRCm39) missense probably benign
R8743:Vmn2r4 UTSW 3 64,317,247 (GRCm39) missense possibly damaging 0.95
R8841:Vmn2r4 UTSW 3 64,314,058 (GRCm39) missense probably damaging 0.97
R9671:Vmn2r4 UTSW 3 64,317,271 (GRCm39) missense probably benign 0.00
R9778:Vmn2r4 UTSW 3 64,322,497 (GRCm39) missense probably benign 0.15
X0019:Vmn2r4 UTSW 3 64,314,057 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- ACACGATGAATCCCTACAATTCTTG -3'
(R):5'- ACTACCTGTCTGTCTGCAGTG -3'

Sequencing Primer
(F):5'- TCTTGAAACAGCAACTGACATAG -3'
(R):5'- CATTCTTCAAGCATTTGTGTAGCTG -3'
Posted On 2015-11-11