Incidental Mutation 'IGL02826:Kdm1b'
| ID |
361206 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Kdm1b
|
| Ensembl Gene |
ENSMUSG00000038080 |
| Gene Name |
lysine (K)-specific demethylase 1B |
| Synonyms |
4632428N09Rik, Aof1 |
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.557)
|
| Stock # |
IGL02826
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
13 |
| Chromosomal Location |
47043499-47085279 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to A
at 47080467 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Lysine
at position 759
(T759K)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000038373
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000021807]
[ENSMUST00000037025]
|
| AlphaFold |
Q8CIG3 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000021807
|
| SMART Domains |
Protein: ENSMUSP00000021807
Gene: ENSMUSG00000021377
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
3 |
18 |
N/A |
INTRINSIC |
|
low complexity region
|
31 |
55 |
N/A |
INTRINSIC |
|
low complexity region
|
58 |
69 |
N/A |
INTRINSIC |
|
SAP
|
153 |
187 |
2.97e-8 |
SMART |
|
low complexity region
|
190 |
210 |
N/A |
INTRINSIC |
|
low complexity region
|
231 |
315 |
N/A |
INTRINSIC |
|
Pfam:DEK_C
|
327 |
379 |
3.4e-19 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000037025
AA Change: T759K
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000038373
Gene: ENSMUSG00000038080
AA Change: T759K
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:zf-CW
|
138 |
191 |
2.6e-13 |
PFAM |
|
low complexity region
|
235 |
253 |
N/A |
INTRINSIC |
|
Pfam:SWIRM
|
286 |
369 |
6e-12 |
PFAM |
|
Pfam:Pyr_redox_2
|
368 |
490 |
3.1e-8 |
PFAM |
|
Pfam:Thi4
|
375 |
446 |
2.2e-10 |
PFAM |
|
Pfam:FAD_binding_3
|
388 |
423 |
4.1e-7 |
PFAM |
|
Pfam:HI0933_like
|
389 |
428 |
1.6e-7 |
PFAM |
|
Pfam:FAD_binding_2
|
390 |
428 |
1.6e-6 |
PFAM |
|
Pfam:Pyr_redox
|
390 |
438 |
8e-8 |
PFAM |
|
Pfam:NAD_binding_8
|
393 |
460 |
1.6e-13 |
PFAM |
|
Pfam:Amino_oxidase
|
398 |
824 |
3.7e-86 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000128977
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000138401
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000143518
AA Change: T375K
|
| SMART Domains |
Protein: ENSMUSP00000114999
Gene: ENSMUSG00000038080
AA Change: T375K
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SWIRM
|
3 |
86 |
1.1e-12 |
PFAM |
|
Pfam:Thi4
|
91 |
163 |
3.5e-10 |
PFAM |
|
Pfam:FAD_binding_3
|
105 |
140 |
3.5e-7 |
PFAM |
|
Pfam:HI0933_like
|
106 |
145 |
1.7e-7 |
PFAM |
|
Pfam:Pyr_redox_2
|
106 |
251 |
1.5e-10 |
PFAM |
|
Pfam:FAD_binding_2
|
107 |
150 |
5.7e-7 |
PFAM |
|
Pfam:Pyr_redox
|
107 |
158 |
6.4e-8 |
PFAM |
|
Pfam:Pyr_redox_3
|
109 |
288 |
1.2e-13 |
PFAM |
|
Pfam:NAD_binding_8
|
110 |
177 |
2.3e-13 |
PFAM |
|
Pfam:Amino_oxidase
|
115 |
181 |
8.6e-19 |
PFAM |
|
Pfam:Amino_oxidase
|
178 |
441 |
4.5e-63 |
PFAM |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
PHENOTYPE: Homozygous null mice of both sexes are viable, grossly normal and male mice are fertile; however, heterozygous progeny of homozygous null mothers display severe placental defects, embryonic growth impairment, neural tube defects and pericardial edema, and do not survive past E10.5. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 45 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1110004E09Rik |
A |
C |
16: 90,926,062 (GRCm38) |
D261E |
probably benign |
Het |
| 1810041L15Rik |
A |
G |
15: 84,420,129 (GRCm38) |
|
probably benign |
Het |
| 4930404N11Rik |
A |
G |
10: 81,364,736 (GRCm38) |
|
probably benign |
Het |
| A3galt2 |
T |
C |
4: 128,761,509 (GRCm38) |
|
probably benign |
Het |
| Alk |
C |
T |
17: 71,869,536 (GRCm38) |
G1591D |
probably damaging |
Het |
| Angptl2 |
T |
C |
2: 33,228,315 (GRCm38) |
S34P |
probably benign |
Het |
| Atp2a2 |
A |
G |
5: 122,489,291 (GRCm38) |
V137A |
probably benign |
Het |
| Atp8b5 |
A |
G |
4: 43,366,770 (GRCm38) |
M845V |
probably damaging |
Het |
| Camk1d |
A |
G |
2: 5,565,760 (GRCm38) |
V30A |
possibly damaging |
Het |
| Ceacam19 |
G |
A |
7: 19,882,610 (GRCm38) |
T193I |
probably benign |
Het |
| Chst15 |
T |
A |
7: 132,266,746 (GRCm38) |
D315V |
probably damaging |
Het |
| Cux1 |
G |
T |
5: 136,308,003 (GRCm38) |
P885Q |
probably damaging |
Het |
| Cyth1 |
C |
T |
11: 118,185,481 (GRCm38) |
E88K |
possibly damaging |
Het |
| Dido1 |
A |
G |
2: 180,683,958 (GRCm38) |
V479A |
probably benign |
Het |
| Dlc1 |
G |
T |
8: 36,570,275 (GRCm38) |
|
probably benign |
Het |
| H2-Ab1 |
G |
A |
17: 34,264,911 (GRCm38) |
R82Q |
probably damaging |
Het |
| Hps6 |
T |
A |
19: 46,006,041 (GRCm38) |
*806K |
probably null |
Het |
| Ilf3 |
T |
C |
9: 21,398,044 (GRCm38) |
S486P |
probably benign |
Het |
| Kirrel |
C |
A |
3: 87,088,485 (GRCm38) |
V381F |
probably damaging |
Het |
| Kmt2b |
A |
T |
7: 30,577,144 (GRCm38) |
V1701E |
probably damaging |
Het |
| Lrmda |
T |
C |
14: 22,828,737 (GRCm38) |
Y100H |
probably damaging |
Het |
| Mastl |
T |
C |
2: 23,145,409 (GRCm38) |
I169V |
probably damaging |
Het |
| Mroh2b |
A |
G |
15: 4,962,148 (GRCm38) |
E1576G |
probably damaging |
Het |
| Nek3 |
A |
T |
8: 22,160,368 (GRCm38) |
|
probably null |
Het |
| Nipal3 |
G |
T |
4: 135,468,550 (GRCm38) |
Y247* |
probably null |
Het |
| Nt5e |
A |
C |
9: 88,355,705 (GRCm38) |
K229N |
probably damaging |
Het |
| Olfr237-ps1 |
A |
G |
6: 43,153,577 (GRCm38) |
I91V |
possibly damaging |
Het |
| Olfr974 |
G |
T |
9: 39,942,958 (GRCm38) |
G233C |
probably damaging |
Het |
| Opa1 |
A |
G |
16: 29,610,887 (GRCm38) |
M290V |
probably null |
Het |
| Parp2 |
T |
A |
14: 50,815,415 (GRCm38) |
I155K |
probably benign |
Het |
| Pde4dip |
G |
T |
3: 97,767,087 (GRCm38) |
A171E |
probably damaging |
Het |
| Prom2 |
C |
T |
2: 127,531,116 (GRCm38) |
E678K |
probably benign |
Het |
| Rab12 |
A |
G |
17: 66,498,116 (GRCm38) |
|
probably benign |
Het |
| Rgs8 |
A |
T |
1: 153,670,799 (GRCm38) |
T13S |
probably damaging |
Het |
| Setd3 |
A |
G |
12: 108,112,124 (GRCm38) |
|
probably benign |
Het |
| Slx4ip |
G |
A |
2: 137,004,973 (GRCm38) |
V53I |
probably damaging |
Het |
| Stil |
A |
G |
4: 115,024,098 (GRCm38) |
D613G |
probably benign |
Het |
| Tjp3 |
T |
A |
10: 81,273,689 (GRCm38) |
S858C |
probably damaging |
Het |
| Tmem215 |
A |
G |
4: 40,474,632 (GRCm38) |
*236W |
probably null |
Het |
| Ttbk1 |
A |
G |
17: 46,470,660 (GRCm38) |
V389A |
probably benign |
Het |
| Wdfy4 |
A |
G |
14: 32,971,750 (GRCm38) |
F2706S |
possibly damaging |
Het |
| Xpo4 |
C |
A |
14: 57,629,420 (GRCm38) |
V222L |
possibly damaging |
Het |
| Zfc3h1 |
A |
G |
10: 115,400,904 (GRCm38) |
S428G |
probably benign |
Het |
| Zfp286 |
T |
C |
11: 62,787,960 (GRCm38) |
Q47R |
probably damaging |
Het |
| Zfp318 |
A |
G |
17: 46,398,754 (GRCm38) |
K468E |
probably damaging |
Het |
|
| Other mutations in Kdm1b |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00587:Kdm1b
|
APN |
13 |
47,068,540 (GRCm38) |
missense |
probably benign |
0.01 |
|
IGL00924:Kdm1b
|
APN |
13 |
47,068,480 (GRCm38) |
missense |
probably benign |
|
|
IGL01553:Kdm1b
|
APN |
13 |
47,080,548 (GRCm38) |
missense |
probably damaging |
0.96 |
|
IGL01663:Kdm1b
|
APN |
13 |
47,073,737 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL02385:Kdm1b
|
APN |
13 |
47,068,506 (GRCm38) |
missense |
possibly damaging |
0.49 |
|
IGL02505:Kdm1b
|
APN |
13 |
47,060,855 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03257:Kdm1b
|
APN |
13 |
47,049,266 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0052:Kdm1b
|
UTSW |
13 |
47,064,117 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0319:Kdm1b
|
UTSW |
13 |
47,053,719 (GRCm38) |
missense |
probably benign |
|
|
R0426:Kdm1b
|
UTSW |
13 |
47,064,244 (GRCm38) |
splice site |
probably benign |
|
|
R0599:Kdm1b
|
UTSW |
13 |
47,058,810 (GRCm38) |
missense |
possibly damaging |
0.47 |
|
R0764:Kdm1b
|
UTSW |
13 |
47,068,603 (GRCm38) |
missense |
possibly damaging |
0.70 |
|
R1163:Kdm1b
|
UTSW |
13 |
47,071,922 (GRCm38) |
missense |
probably benign |
0.02 |
|
R1543:Kdm1b
|
UTSW |
13 |
47,068,521 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R1584:Kdm1b
|
UTSW |
13 |
47,064,054 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1627:Kdm1b
|
UTSW |
13 |
47,064,231 (GRCm38) |
critical splice donor site |
probably null |
|
|
R1669:Kdm1b
|
UTSW |
13 |
47,068,548 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1758:Kdm1b
|
UTSW |
13 |
47,060,768 (GRCm38) |
missense |
probably benign |
0.00 |
|
R1860:Kdm1b
|
UTSW |
13 |
47,049,190 (GRCm38) |
missense |
probably benign |
0.03 |
|
R1907:Kdm1b
|
UTSW |
13 |
47,064,120 (GRCm38) |
missense |
probably benign |
0.00 |
|
R2225:Kdm1b
|
UTSW |
13 |
47,064,088 (GRCm38) |
frame shift |
probably null |
|
|
R2239:Kdm1b
|
UTSW |
13 |
47,073,755 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2271:Kdm1b
|
UTSW |
13 |
47,064,088 (GRCm38) |
frame shift |
probably null |
|
|
R2302:Kdm1b
|
UTSW |
13 |
47,064,088 (GRCm38) |
frame shift |
probably null |
|
|
R2303:Kdm1b
|
UTSW |
13 |
47,064,088 (GRCm38) |
frame shift |
probably null |
|
|
R2380:Kdm1b
|
UTSW |
13 |
47,073,755 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2442:Kdm1b
|
UTSW |
13 |
47,062,975 (GRCm38) |
missense |
probably benign |
0.32 |
|
R3022:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R3054:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R3545:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R3546:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R3548:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4094:Kdm1b
|
UTSW |
13 |
47,063,020 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4419:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4420:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4502:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4547:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4548:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4785:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4793:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4804:Kdm1b
|
UTSW |
13 |
47,063,077 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4882:Kdm1b
|
UTSW |
13 |
47,060,893 (GRCm38) |
missense |
probably benign |
|
|
R4906:Kdm1b
|
UTSW |
13 |
47,063,144 (GRCm38) |
critical splice donor site |
probably null |
|
|
R4965:Kdm1b
|
UTSW |
13 |
47,074,367 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R5039:Kdm1b
|
UTSW |
13 |
47,077,486 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5098:Kdm1b
|
UTSW |
13 |
47,062,991 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5265:Kdm1b
|
UTSW |
13 |
47,062,969 (GRCm38) |
missense |
probably benign |
0.35 |
|
R5541:Kdm1b
|
UTSW |
13 |
47,079,196 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5814:Kdm1b
|
UTSW |
13 |
47,063,146 (GRCm38) |
splice site |
probably null |
|
|
R6046:Kdm1b
|
UTSW |
13 |
47,079,253 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
R6798:Kdm1b
|
UTSW |
13 |
47,068,536 (GRCm38) |
missense |
probably benign |
0.00 |
|
R6903:Kdm1b
|
UTSW |
13 |
47,074,404 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7831:Kdm1b
|
UTSW |
13 |
47,050,622 (GRCm38) |
missense |
probably benign |
0.17 |
|
R7973:Kdm1b
|
UTSW |
13 |
47,077,446 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8181:Kdm1b
|
UTSW |
13 |
47,051,901 (GRCm38) |
critical splice donor site |
probably null |
|
|
R8248:Kdm1b
|
UTSW |
13 |
47,071,878 (GRCm38) |
intron |
probably benign |
|
|
R8821:Kdm1b
|
UTSW |
13 |
47,064,141 (GRCm38) |
missense |
possibly damaging |
0.94 |
|
R8831:Kdm1b
|
UTSW |
13 |
47,064,141 (GRCm38) |
missense |
possibly damaging |
0.94 |
|
R8842:Kdm1b
|
UTSW |
13 |
47,078,356 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8861:Kdm1b
|
UTSW |
13 |
47,064,106 (GRCm38) |
missense |
probably benign |
0.02 |
|
R8885:Kdm1b
|
UTSW |
13 |
47,053,708 (GRCm38) |
nonsense |
probably null |
|
|
R9038:Kdm1b
|
UTSW |
13 |
47,049,294 (GRCm38) |
missense |
probably benign |
0.07 |
|
R9132:Kdm1b
|
UTSW |
13 |
47,071,982 (GRCm38) |
missense |
probably benign |
0.05 |
|
R9268:Kdm1b
|
UTSW |
13 |
47,064,229 (GRCm38) |
missense |
probably benign |
0.00 |
|
R9616:Kdm1b
|
UTSW |
13 |
47,080,554 (GRCm38) |
missense |
probably damaging |
1.00 |
|
| Posted On |
2015-12-18 |
Incidental Mutation