Incidental Mutation 'IGL02832:Thy1'
ID 361485
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Thy1
Ensembl Gene ENSMUSG00000032011
Gene Name thymus cell antigen 1, theta
Synonyms Thy1.2, Thy1.1, Thy 1.2, Thy-1, Thy-1.2, T25, CD90
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # IGL02832
Quality Score
Status
Chromosome 9
Chromosomal Location 43954681-43959876 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 43958111 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 80 (T80A)
Ref Sequence ENSEMBL: ENSMUSP00000150960 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000114840] [ENSMUST00000214627] [ENSMUST00000215156] [ENSMUST00000215809]
AlphaFold P01831
Predicted Effect probably benign
Transcript: ENSMUST00000114840
AA Change: T80A

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000110489
Gene: ENSMUSG00000032011
AA Change: T80A

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
IGv 33 107 2.13e-7 SMART
low complexity region 145 154 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000213632
Predicted Effect noncoding transcript
Transcript: ENSMUST00000213733
Predicted Effect probably benign
Transcript: ENSMUST00000214627
Predicted Effect probably benign
Transcript: ENSMUST00000215156
Predicted Effect probably benign
Transcript: ENSMUST00000215809
AA Change: T80A

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: This gene encodes a glycoprotein that is anchored to the cell surface of thymocytes, neuronal and other cells through a glycosyl-phosphatidylinositol moiety. A soluble form of the encoded protein has also been detected in serum and cerebrospinal fluid. The encoded protein undergoes further processing to generate the mature protein which mediates cell-cell interactions to trigger downstream signaling pathways. [provided by RefSeq, Jul 2015]
PHENOTYPE: Homozygous null mice are viable, fertile, and display no abnormalities in the brain and spinal cord, have normal axonal development and regeneration and no behavioral abnormalities. Long term potentiation is inhibited in the dentate gyrus. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 50 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adamts9 G A 6: 92,784,156 (GRCm39) T985M probably damaging Het
Alpk1 A G 3: 127,473,592 (GRCm39) S804P possibly damaging Het
Ap3b1 A G 13: 94,664,835 (GRCm39) I925V unknown Het
Cep135 T A 5: 76,788,796 (GRCm39) S1130T probably damaging Het
Cers3 A T 7: 66,431,573 (GRCm39) M183L probably benign Het
Col5a1 A G 2: 27,842,352 (GRCm39) E409G unknown Het
Cyp4a32 G T 4: 115,471,818 (GRCm39) V410F probably damaging Het
Ddx1 G A 12: 13,277,318 (GRCm39) Q528* probably null Het
Dio2 G A 12: 90,696,178 (GRCm39) probably benign Het
Dnah9 G T 11: 65,931,172 (GRCm39) A2008E probably damaging Het
Dnajc2 A G 5: 21,965,408 (GRCm39) V457A probably benign Het
Dytn T C 1: 63,682,532 (GRCm39) T372A probably benign Het
Fam135a T C 1: 24,067,714 (GRCm39) I152V probably benign Het
Fmnl2 C T 2: 52,748,261 (GRCm39) A36V possibly damaging Het
Galnt7 G A 8: 58,005,531 (GRCm39) T234I probably damaging Het
Gba1 A C 3: 89,110,809 (GRCm39) I6L probably benign Het
Gja10 A G 4: 32,602,147 (GRCm39) V79A probably damaging Het
Gpd2 T A 2: 57,228,991 (GRCm39) V265E probably damaging Het
Gpld1 T C 13: 25,136,861 (GRCm39) Y60H probably damaging Het
H2bc27 A G 11: 58,839,869 (GRCm39) K35R probably benign Het
Heatr9 A G 11: 83,409,672 (GRCm39) probably benign Het
Krt75 T A 15: 101,476,508 (GRCm39) D419V probably benign Het
Lrig3 A T 10: 125,842,871 (GRCm39) I599F probably benign Het
Lrp4 A G 2: 91,341,925 (GRCm39) D1846G probably damaging Het
Mamdc2 C T 19: 23,281,215 (GRCm39) A653T probably damaging Het
Myo7a A T 7: 97,740,227 (GRCm39) probably null Het
Notch2 A G 3: 98,044,689 (GRCm39) D1537G probably benign Het
Or10k2 G A 8: 84,268,100 (GRCm39) C109Y probably damaging Het
Or51a25 G T 7: 102,372,858 (GRCm39) H280N probably benign Het
Or52ae7 A T 7: 103,119,905 (GRCm39) I220L probably benign Het
Papss1 A C 3: 131,288,280 (GRCm39) D84A probably damaging Het
Pcdhb16 T A 18: 37,611,527 (GRCm39) D162E probably damaging Het
Rab11fip1 C T 8: 27,642,840 (GRCm39) R653Q possibly damaging Het
Rap1gap2 A T 11: 74,303,281 (GRCm39) probably benign Het
Rasal2 T C 1: 156,984,777 (GRCm39) D990G probably damaging Het
Rnf32 T C 5: 29,410,701 (GRCm39) probably null Het
Rp1 T C 1: 4,419,936 (GRCm39) D392G probably benign Het
Scn9a T C 2: 66,398,373 (GRCm39) D79G probably damaging Het
Selenon A T 4: 134,268,219 (GRCm39) V438D probably damaging Het
Slc47a1 G A 11: 61,254,239 (GRCm39) H158Y probably benign Het
Slc5a12 A T 2: 110,471,160 (GRCm39) E463D probably benign Het
Taf2 C T 15: 54,879,959 (GRCm39) V1126M probably benign Het
Tas2r143 G T 6: 42,377,259 (GRCm39) V30L possibly damaging Het
Tcea3 G A 4: 135,995,424 (GRCm39) V256M probably damaging Het
Tmem9 A G 1: 135,947,469 (GRCm39) N47S probably damaging Het
Tmprss11g T C 5: 86,645,128 (GRCm39) Q101R probably benign Het
Trim66 C T 7: 109,059,704 (GRCm39) C792Y probably damaging Het
Tstd2 A T 4: 46,124,949 (GRCm39) M226K probably damaging Het
Utrn G T 10: 12,613,937 (GRCm39) T378K possibly damaging Het
Vmn2r23 A G 6: 123,681,355 (GRCm39) I88V probably benign Het
Other mutations in Thy1
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0551:Thy1 UTSW 9 43,958,645 (GRCm39) missense probably damaging 1.00
R0621:Thy1 UTSW 9 43,958,030 (GRCm39) missense probably damaging 1.00
R1774:Thy1 UTSW 9 43,958,636 (GRCm39) missense probably benign 0.07
R3625:Thy1 UTSW 9 43,958,028 (GRCm39) missense probably damaging 1.00
R4724:Thy1 UTSW 9 43,958,645 (GRCm39) missense probably damaging 1.00
R7190:Thy1 UTSW 9 43,958,222 (GRCm39) missense possibly damaging 0.84
R7667:Thy1 UTSW 9 43,958,732 (GRCm39) missense probably damaging 1.00
R7684:Thy1 UTSW 9 43,957,855 (GRCm39) missense unknown
R9022:Thy1 UTSW 9 43,957,947 (GRCm39) missense probably damaging 1.00
R9227:Thy1 UTSW 9 43,958,004 (GRCm39) missense probably damaging 0.99
R9326:Thy1 UTSW 9 43,957,983 (GRCm39) missense probably damaging 1.00
Posted On 2015-12-18