Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02850:Cxcr5'

361820

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Cxcr5

Ensembl Gene

ENSMUSG00000047880

Gene Name

C-X-C motif chemokine receptor 5

Synonyms

Blr1, CXCR-5, Gpcr6

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.127) question?

Stock #

IGL02850

Quality Score

Status

Chromosome

Chromosomal Location

44423084-44437741 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 44425403 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Tryptophan at position 85 (R85W)

Ref Sequence

ENSEMBL: ENSMUSP00000149508 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000062215] [ENSMUST00000074989] [ENSMUST00000179828] [ENSMUST00000215293] [ENSMUST00000215661] [ENSMUST00000218183] [ENSMUST00000220303]

AlphaFold

Q04683

Predicted Effect

probably damaging
Transcript: ENSMUST00000062215
AA Change: R85W

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000050444
Gene: ENSMUSG00000047880
AA Change: R85W

Domain	Start	End	E-Value	Type
Pfam:7tm_1	70	324	8.9e-62	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000074989

SMART Domains

Protein: ENSMUSP00000074516
Gene: ENSMUSG00000063382

Domain	Start	End	E-Value	Type
low complexity region	215	234	N/A	INTRINSIC
PDB:2XB1\|C	236	269	2e-14	PDB
low complexity region	278	292	N/A	INTRINSIC
low complexity region	297	325	N/A	INTRINSIC
low complexity region	337	376	N/A	INTRINSIC
Pfam:BCL9	395	432	2.4e-18	PFAM
low complexity region	490	507	N/A	INTRINSIC
low complexity region	521	534	N/A	INTRINSIC
low complexity region	546	560	N/A	INTRINSIC
low complexity region	590	602	N/A	INTRINSIC
low complexity region	766	783	N/A	INTRINSIC
low complexity region	835	852	N/A	INTRINSIC
low complexity region	1042	1059	N/A	INTRINSIC
low complexity region	1114	1127	N/A	INTRINSIC
low complexity region	1167	1178	N/A	INTRINSIC
low complexity region	1232	1245	N/A	INTRINSIC
low complexity region	1262	1273	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000179828
AA Change: R85W

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000137518
Gene: ENSMUSG00000047880
AA Change: R85W

Domain	Start	End	E-Value	Type
Pfam:7tm_1	70	324	1.7e-52	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000215293
AA Change: R85W

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably benign
Transcript: ENSMUST00000215661

Predicted Effect

probably benign
Transcript: ENSMUST00000218183

Predicted Effect

probably benign
Transcript: ENSMUST00000220303

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a multi-pass membrane protein that belongs to the CXC chemokine receptor family. It is expressed in mature B-cells and Burkitt's lymphoma. This cytokine receptor binds to B-lymphocyte chemoattractant (BLC), and is involved in B-cell migration into B-cell follicles of spleen and Peyer patches. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Aug 2011]
PHENOTYPE: Homozygous null mutants lack inguinal lymph nodes, have a few abnormal or no Peyer's patches, morphologically altered primary lymphoid follicles and no functional germinal centers in their spleen. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadacl2fm1	A	G	3: 59,843,993 (GRCm39)	Y229C	probably damaging	Het
Adgrd1	A	G	5: 129,192,119 (GRCm39)	D63G	probably damaging	Het
Ahnak	A	G	19: 8,979,960 (GRCm39)	T415A	probably benign	Het
Antxr2	A	G	5: 98,151,937 (GRCm39)	V178A	probably damaging	Het
Ap1s1	A	G	5: 137,070,634 (GRCm39)	Y127H	possibly damaging	Het
Bbs2	A	T	8: 94,803,710 (GRCm39)	M510K	probably benign	Het
Cbfa2t2	A	G	2: 154,377,090 (GRCm39)	N591S	probably damaging	Het
Chd6	T	A	2: 160,861,536 (GRCm39)	R504*	probably null	Het
Cnpy3	A	G	17: 47,054,217 (GRCm39)		probably benign	Het
Cntn2	T	G	1: 132,446,114 (GRCm39)	K824T	probably benign	Het
Cntnap3	T	C	13: 64,905,223 (GRCm39)	T853A	probably damaging	Het
Cog4	G	A	8: 111,593,221 (GRCm39)	G444D	possibly damaging	Het
Col18a1	A	T	10: 76,932,300 (GRCm39)	I510N	probably damaging	Het
Cyth3	C	A	5: 143,672,259 (GRCm39)	T58K	probably damaging	Het
Dio3	T	C	12: 110,245,970 (GRCm39)	V102A	probably damaging	Het
Dmbx1	G	A	4: 115,775,204 (GRCm39)	R359C	probably damaging	Het
Fam3d	C	T	14: 8,361,475 (GRCm38)		probably null	Het
Fras1	C	A	5: 96,926,034 (GRCm39)	P3746Q	probably damaging	Het
Glt1d1	T	A	5: 127,721,409 (GRCm39)	M32K	probably benign	Het
Hunk	A	G	16: 90,229,460 (GRCm39)	N31S	probably damaging	Het
Ints11	T	C	4: 155,959,761 (GRCm39)	S123P	probably benign	Het
Izumo2	T	C	7: 44,358,339 (GRCm39)	L58S	probably damaging	Het
Izumo4	A	G	10: 80,540,032 (GRCm39)		probably benign	Het
Kcnh7	T	A	2: 62,618,029 (GRCm39)	K487*	probably null	Het
Lrp12	T	C	15: 39,741,971 (GRCm39)	Y248C	probably damaging	Het
Maco1	T	C	4: 134,555,697 (GRCm39)	K259E	probably benign	Het
Map3k4	T	C	17: 12,490,801 (GRCm39)	D210G	probably damaging	Het
Mast4	T	C	13: 102,890,740 (GRCm39)	D1038G	probably damaging	Het
Noa1	T	C	5: 77,442,338 (GRCm39)	T651A	probably benign	Het
Nop2	A	C	6: 125,121,048 (GRCm39)	K610T	possibly damaging	Het
Nop2	G	T	6: 125,121,033 (GRCm39)	G605V	probably benign	Het
Npvf	G	A	6: 50,629,670 (GRCm39)	R107W	probably benign	Het
Or10ad1b	A	G	15: 98,125,232 (GRCm39)	V98A	probably benign	Het
Or2h2c	T	C	17: 37,422,865 (GRCm39)	N3S	probably benign	Het
Oxr1	A	G	15: 41,718,329 (GRCm39)	T775A	probably damaging	Het
P2ry13	C	T	3: 59,117,029 (GRCm39)	A250T	probably damaging	Het
Pcsk9	A	T	4: 106,316,062 (GRCm39)	V127E	probably damaging	Het
Piezo2	G	A	18: 63,153,704 (GRCm39)	S2547F	probably benign	Het
Pinx1	A	G	14: 64,156,609 (GRCm39)	T179A	probably damaging	Het
Pjvk	T	C	2: 76,488,795 (GRCm39)	V322A	possibly damaging	Het
Pla2r1	T	A	2: 60,332,413 (GRCm39)	R476S	probably benign	Het
Polb	A	G	8: 23,138,277 (GRCm39)		probably benign	Het
Polg2	C	T	11: 106,659,293 (GRCm39)	D407N	probably damaging	Het
Pou5f2	G	A	13: 78,173,178 (GRCm39)	R40Q	probably benign	Het
Sctr	T	C	1: 119,972,393 (GRCm39)	M193T	possibly damaging	Het
Sctr	T	A	1: 119,949,909 (GRCm39)	C33S	probably damaging	Het
Sema5b	T	C	16: 35,480,885 (GRCm39)	S819P	probably benign	Het
Setd1b	C	T	5: 123,286,652 (GRCm39)	T566I	unknown	Het
Sptbn4	G	A	7: 27,126,258 (GRCm39)	R222C	possibly damaging	Het
Taf5l	A	G	8: 124,730,197 (GRCm39)	V129A	possibly damaging	Het
Tmem163	C	T	1: 127,427,984 (GRCm39)	V201I	probably benign	Het
Ube3b	T	C	5: 114,544,310 (GRCm39)	L569P	probably damaging	Het
Vwa3a	A	G	7: 120,372,515 (GRCm39)	E301G	probably benign	Het
Wnk1	T	C	6: 119,914,823 (GRCm39)	I1660V	probably benign	Het
Zbtb22	T	A	17: 34,135,987 (GRCm39)	L44Q	probably damaging	Het
Zfp691	T	C	4: 119,027,389 (GRCm39)	D281G	probably damaging	Het
Zfy2	C	T	Y: 2,106,894 (GRCm39)	G580D	probably benign	Het
Zfy2	T	A	Y: 2,117,188 (GRCm39)	H213L	probably benign	Het

Other mutations in Cxcr5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01081:Cxcr5	APN	9	44,425,607 (GRCm39)	unclassified	probably benign
R0326:Cxcr5	UTSW	9	44,424,578 (GRCm39)	missense	probably benign
R0688:Cxcr5	UTSW	9	44,424,964 (GRCm39)	splice site	probably null
R4585:Cxcr5	UTSW	9	44,425,442 (GRCm39)	missense	probably benign	0.40
R4784:Cxcr5	UTSW	9	44,424,638 (GRCm39)	missense	probably benign	0.00
R4785:Cxcr5	UTSW	9	44,424,638 (GRCm39)	missense	probably benign	0.00
R5104:Cxcr5	UTSW	9	44,424,616 (GRCm39)	missense	probably benign	0.22
R5659:Cxcr5	UTSW	9	44,424,690 (GRCm39)	missense	probably benign	0.01
R6488:Cxcr5	UTSW	9	44,425,276 (GRCm39)	missense	probably damaging	0.98
R7088:Cxcr5	UTSW	9	44,424,683 (GRCm39)	missense	possibly damaging	0.90
R7664:Cxcr5	UTSW	9	44,424,607 (GRCm39)	missense	probably benign	0.01
R8203:Cxcr5	UTSW	9	44,425,451 (GRCm39)	missense	probably benign
R8416:Cxcr5	UTSW	9	44,425,583 (GRCm39)	missense	probably benign	0.02
R8885:Cxcr5	UTSW	9	44,425,549 (GRCm39)	missense	probably benign	0.02
R9080:Cxcr5	UTSW	9	44,424,563 (GRCm39)	missense	probably damaging	1.00
R9366:Cxcr5	UTSW	9	44,424,730 (GRCm39)	missense	possibly damaging	0.90
X0026:Cxcr5	UTSW	9	44,424,664 (GRCm39)	missense	probably damaging	1.00

Posted On

2015-12-18