Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02850:Glt1d1'

361848

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Glt1d1

Ensembl Gene

ENSMUSG00000049971

Gene Name

glycosyltransferase 1 domain containing 1

Synonyms

5730455A04Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.050) question?

Stock #

IGL02850

Quality Score

Status

Chromosome

Chromosomal Location

127709326-127786438 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 127721409 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 32 (M32K)

Ref Sequence

ENSEMBL: ENSMUSP00000113864 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000118139]

AlphaFold

A4FUP9

Predicted Effect

probably benign
Transcript: ENSMUST00000118139
AA Change: M32K

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000113864
Gene: ENSMUSG00000049971
AA Change: M32K

Domain	Start	End	E-Value	Type
Pfam:Glycos_transf_1	153	319	8.2e-23	PFAM
Pfam:Glyco_trans_1_4	166	305	8.7e-15	PFAM
Pfam:Glyco_trans_1_2	244	335	8.6e-12	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137157

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadacl2fm1	A	G	3: 59,843,993 (GRCm39)	Y229C	probably damaging	Het
Adgrd1	A	G	5: 129,192,119 (GRCm39)	D63G	probably damaging	Het
Ahnak	A	G	19: 8,979,960 (GRCm39)	T415A	probably benign	Het
Antxr2	A	G	5: 98,151,937 (GRCm39)	V178A	probably damaging	Het
Ap1s1	A	G	5: 137,070,634 (GRCm39)	Y127H	possibly damaging	Het
Bbs2	A	T	8: 94,803,710 (GRCm39)	M510K	probably benign	Het
Cbfa2t2	A	G	2: 154,377,090 (GRCm39)	N591S	probably damaging	Het
Chd6	T	A	2: 160,861,536 (GRCm39)	R504*	probably null	Het
Cnpy3	A	G	17: 47,054,217 (GRCm39)		probably benign	Het
Cntn2	T	G	1: 132,446,114 (GRCm39)	K824T	probably benign	Het
Cntnap3	T	C	13: 64,905,223 (GRCm39)	T853A	probably damaging	Het
Cog4	G	A	8: 111,593,221 (GRCm39)	G444D	possibly damaging	Het
Col18a1	A	T	10: 76,932,300 (GRCm39)	I510N	probably damaging	Het
Cxcr5	G	A	9: 44,425,403 (GRCm39)	R85W	probably damaging	Het
Cyth3	C	A	5: 143,672,259 (GRCm39)	T58K	probably damaging	Het
Dio3	T	C	12: 110,245,970 (GRCm39)	V102A	probably damaging	Het
Dmbx1	G	A	4: 115,775,204 (GRCm39)	R359C	probably damaging	Het
Fam3d	C	T	14: 8,361,475 (GRCm38)		probably null	Het
Fras1	C	A	5: 96,926,034 (GRCm39)	P3746Q	probably damaging	Het
Hunk	A	G	16: 90,229,460 (GRCm39)	N31S	probably damaging	Het
Ints11	T	C	4: 155,959,761 (GRCm39)	S123P	probably benign	Het
Izumo2	T	C	7: 44,358,339 (GRCm39)	L58S	probably damaging	Het
Izumo4	A	G	10: 80,540,032 (GRCm39)		probably benign	Het
Kcnh7	T	A	2: 62,618,029 (GRCm39)	K487*	probably null	Het
Lrp12	T	C	15: 39,741,971 (GRCm39)	Y248C	probably damaging	Het
Maco1	T	C	4: 134,555,697 (GRCm39)	K259E	probably benign	Het
Map3k4	T	C	17: 12,490,801 (GRCm39)	D210G	probably damaging	Het
Mast4	T	C	13: 102,890,740 (GRCm39)	D1038G	probably damaging	Het
Noa1	T	C	5: 77,442,338 (GRCm39)	T651A	probably benign	Het
Nop2	A	C	6: 125,121,048 (GRCm39)	K610T	possibly damaging	Het
Nop2	G	T	6: 125,121,033 (GRCm39)	G605V	probably benign	Het
Npvf	G	A	6: 50,629,670 (GRCm39)	R107W	probably benign	Het
Or10ad1b	A	G	15: 98,125,232 (GRCm39)	V98A	probably benign	Het
Or2h2c	T	C	17: 37,422,865 (GRCm39)	N3S	probably benign	Het
Oxr1	A	G	15: 41,718,329 (GRCm39)	T775A	probably damaging	Het
P2ry13	C	T	3: 59,117,029 (GRCm39)	A250T	probably damaging	Het
Pcsk9	A	T	4: 106,316,062 (GRCm39)	V127E	probably damaging	Het
Piezo2	G	A	18: 63,153,704 (GRCm39)	S2547F	probably benign	Het
Pinx1	A	G	14: 64,156,609 (GRCm39)	T179A	probably damaging	Het
Pjvk	T	C	2: 76,488,795 (GRCm39)	V322A	possibly damaging	Het
Pla2r1	T	A	2: 60,332,413 (GRCm39)	R476S	probably benign	Het
Polb	A	G	8: 23,138,277 (GRCm39)		probably benign	Het
Polg2	C	T	11: 106,659,293 (GRCm39)	D407N	probably damaging	Het
Pou5f2	G	A	13: 78,173,178 (GRCm39)	R40Q	probably benign	Het
Sctr	T	C	1: 119,972,393 (GRCm39)	M193T	possibly damaging	Het
Sctr	T	A	1: 119,949,909 (GRCm39)	C33S	probably damaging	Het
Sema5b	T	C	16: 35,480,885 (GRCm39)	S819P	probably benign	Het
Setd1b	C	T	5: 123,286,652 (GRCm39)	T566I	unknown	Het
Sptbn4	G	A	7: 27,126,258 (GRCm39)	R222C	possibly damaging	Het
Taf5l	A	G	8: 124,730,197 (GRCm39)	V129A	possibly damaging	Het
Tmem163	C	T	1: 127,427,984 (GRCm39)	V201I	probably benign	Het
Ube3b	T	C	5: 114,544,310 (GRCm39)	L569P	probably damaging	Het
Vwa3a	A	G	7: 120,372,515 (GRCm39)	E301G	probably benign	Het
Wnk1	T	C	6: 119,914,823 (GRCm39)	I1660V	probably benign	Het
Zbtb22	T	A	17: 34,135,987 (GRCm39)	L44Q	probably damaging	Het
Zfp691	T	C	4: 119,027,389 (GRCm39)	D281G	probably damaging	Het
Zfy2	C	T	Y: 2,106,894 (GRCm39)	G580D	probably benign	Het
Zfy2	T	A	Y: 2,117,188 (GRCm39)	H213L	probably benign	Het

Other mutations in Glt1d1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00156:Glt1d1	APN	5	127,709,349 (GRCm39)	start codon destroyed	probably null	1.00
IGL01310:Glt1d1	APN	5	127,709,384 (GRCm39)	missense	possibly damaging	0.86
IGL01608:Glt1d1	APN	5	127,741,746 (GRCm39)	missense	possibly damaging	0.56
IGL01738:Glt1d1	APN	5	127,709,419 (GRCm39)	intron	probably benign
IGL02028:Glt1d1	APN	5	127,783,984 (GRCm39)	missense	possibly damaging	0.63
IGL02273:Glt1d1	APN	5	127,734,208 (GRCm39)	splice site	probably benign
IGL02603:Glt1d1	APN	5	127,709,409 (GRCm39)	missense	probably damaging	1.00
IGL02718:Glt1d1	APN	5	127,727,763 (GRCm39)	missense	probably damaging	0.98
IGL03328:Glt1d1	APN	5	127,734,183 (GRCm39)	missense	probably benign
R0049:Glt1d1	UTSW	5	127,740,391 (GRCm39)	splice site	probably benign
R0312:Glt1d1	UTSW	5	127,768,134 (GRCm39)	missense	probably damaging	1.00
R0400:Glt1d1	UTSW	5	127,734,139 (GRCm39)	splice site	probably benign
R1838:Glt1d1	UTSW	5	127,755,193 (GRCm39)	missense	probably benign	0.01
R2060:Glt1d1	UTSW	5	127,734,183 (GRCm39)	missense	probably benign
R2262:Glt1d1	UTSW	5	127,734,176 (GRCm39)	missense	probably benign	0.08
R3776:Glt1d1	UTSW	5	127,771,375 (GRCm39)	missense	probably damaging	1.00
R4205:Glt1d1	UTSW	5	127,766,935 (GRCm39)	missense	probably benign	0.32
R4249:Glt1d1	UTSW	5	127,768,176 (GRCm39)	critical splice donor site	probably null
R4379:Glt1d1	UTSW	5	127,771,346 (GRCm39)	missense	possibly damaging	0.73
R5044:Glt1d1	UTSW	5	127,721,478 (GRCm39)	missense	probably benign	0.38
R5289:Glt1d1	UTSW	5	127,721,420 (GRCm39)	missense	probably benign	0.11
R5374:Glt1d1	UTSW	5	127,734,148 (GRCm39)	splice site	probably null
R5533:Glt1d1	UTSW	5	127,768,095 (GRCm39)	missense	probably damaging	1.00
R5592:Glt1d1	UTSW	5	127,734,183 (GRCm39)	missense	probably benign	0.01
R5870:Glt1d1	UTSW	5	127,754,344 (GRCm39)	missense	probably damaging	1.00
R5942:Glt1d1	UTSW	5	127,721,534 (GRCm39)	splice site	probably null
R6128:Glt1d1	UTSW	5	127,754,335 (GRCm39)	missense	probably damaging	1.00
R6349:Glt1d1	UTSW	5	127,783,950 (GRCm39)	missense	probably benign	0.10
R6490:Glt1d1	UTSW	5	127,721,360 (GRCm39)	splice site	probably null
R6502:Glt1d1	UTSW	5	127,784,045 (GRCm39)	missense	probably damaging	1.00
R8205:Glt1d1	UTSW	5	127,768,080 (GRCm39)	missense	probably benign	0.05
R9231:Glt1d1	UTSW	5	127,754,341 (GRCm39)	missense	probably damaging	1.00
R9699:Glt1d1	UTSW	5	127,771,364 (GRCm39)	missense	probably damaging	1.00

Posted On

2015-12-18