Incidental Mutation 'IGL02852:Btrc'
| ID |
361931 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Btrc
|
| Ensembl Gene |
ENSMUSG00000025217 |
| Gene Name |
beta-transducin repeat containing protein |
| Synonyms |
Beta-Trcp1, Fbw1a, SCF b-TRCP, beta-TrCP, Slimb |
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
IGL02852
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
19 |
| Chromosomal Location |
45352173-45518452 bp(+) (GRCm39) |
| Type of Mutation |
nonsense |
| DNA Base Change (assembly) |
T to A
at 45501095 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Leucine to Stop codon
at position 153
(L153*)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000153562
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000065601]
[ENSMUST00000111936]
[ENSMUST00000223764]
[ENSMUST00000224478]
|
| AlphaFold |
Q3ULA2 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000065601
AA Change: L252*
|
| SMART Domains |
Protein: ENSMUSP00000070728
Gene: ENSMUSG00000025217
AA Change: L252*
| Domain | Start | End | E-Value | Type |
|---|
|
Beta-TrCP_D
|
138 |
177 |
3.32e-25 |
SMART |
|
FBOX
|
189 |
228 |
5.83e-6 |
SMART |
|
WD40
|
292 |
329 |
7.92e-3 |
SMART |
|
WD40
|
332 |
369 |
8.68e-9 |
SMART |
|
WD40
|
372 |
409 |
5.31e-4 |
SMART |
|
WD40
|
415 |
452 |
5.18e-7 |
SMART |
|
WD40
|
455 |
492 |
3.93e-7 |
SMART |
|
WD40
|
495 |
532 |
8.42e-7 |
SMART |
|
WD40
|
544 |
581 |
4.62e-4 |
SMART |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000111936
AA Change: L216*
|
| SMART Domains |
Protein: ENSMUSP00000107567
Gene: ENSMUSG00000025217
AA Change: L216*
| Domain | Start | End | E-Value | Type |
|---|
|
Beta-TrCP_D
|
102 |
141 |
3.32e-25 |
SMART |
|
FBOX
|
153 |
192 |
5.83e-6 |
SMART |
|
WD40
|
256 |
293 |
7.92e-3 |
SMART |
|
WD40
|
296 |
333 |
8.68e-9 |
SMART |
|
WD40
|
336 |
373 |
5.31e-4 |
SMART |
|
WD40
|
379 |
416 |
5.18e-7 |
SMART |
|
WD40
|
419 |
456 |
3.93e-7 |
SMART |
|
WD40
|
459 |
496 |
8.42e-7 |
SMART |
|
WD40
|
508 |
545 |
4.62e-4 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000223764
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000224478
AA Change: L153*
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000225662
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbws class; in addition to an F-box, this protein contains multiple WD-40 repeats. The encoded protein mediates degradation of CD4 via its interaction with HIV-1 Vpu. It has also been shown to ubiquitinate phosphorylated NFKBIA (nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha), targeting it for degradation and thus activating nuclear factor kappa-B. Alternatively spliced transcript variants have been described. A related pseudogene exists in chromosome 6. [provided by RefSeq, Mar 2012]
PHENOTYPE: Embryonic fibroblasts from homozygotes show an increase in polyploidy and apoptosis and decreased cell proliferation. In a second allele, homozygous mutation results in reduced male fertility and abnormal male meiosis with oligozoospermia. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 50 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Bcar1 |
A |
T |
8: 112,441,979 (GRCm39) |
L287* |
probably null |
Het |
| Birc2 |
A |
G |
9: 7,854,484 (GRCm39) |
I402T |
probably damaging |
Het |
| C2cd3 |
T |
C |
7: 100,079,396 (GRCm39) |
F1245L |
probably damaging |
Het |
| Cabp7 |
C |
T |
11: 4,688,912 (GRCm39) |
R186H |
probably damaging |
Het |
| Cdk5r2 |
T |
C |
1: 74,895,298 (GRCm39) |
S348P |
probably benign |
Het |
| Cfhr4 |
T |
C |
1: 139,701,754 (GRCm39) |
Y120C |
probably damaging |
Het |
| Clca3a2 |
T |
C |
3: 144,512,104 (GRCm39) |
D544G |
probably damaging |
Het |
| Col6a6 |
A |
C |
9: 105,661,272 (GRCm39) |
I279S |
probably damaging |
Het |
| Csmd1 |
T |
A |
8: 15,945,728 (GRCm39) |
T3562S |
probably damaging |
Het |
| Dgkd |
T |
C |
1: 87,863,135 (GRCm39) |
S61P |
probably damaging |
Het |
| Dph5 |
T |
A |
3: 115,722,320 (GRCm39) |
M266K |
possibly damaging |
Het |
| Gm14226 |
G |
A |
2: 154,866,841 (GRCm39) |
S266N |
possibly damaging |
Het |
| Gm28047 |
A |
G |
15: 102,446,653 (GRCm39) |
V400A |
possibly damaging |
Het |
| Gucy1a2 |
A |
G |
9: 3,759,691 (GRCm39) |
D499G |
probably benign |
Het |
| Hoxb7 |
C |
T |
11: 96,180,320 (GRCm39) |
T173M |
possibly damaging |
Het |
| Kcnn3 |
T |
A |
3: 89,516,923 (GRCm39) |
I444N |
probably damaging |
Het |
| Kif1b |
A |
G |
4: 149,375,785 (GRCm39) |
I27T |
probably damaging |
Het |
| Krtap8-1 |
A |
G |
16: 89,284,753 (GRCm39) |
Y15H |
probably benign |
Het |
| Myo18b |
C |
T |
5: 112,863,377 (GRCm39) |
V2154I |
probably benign |
Het |
| Pcdhb3 |
A |
G |
18: 37,435,150 (GRCm39) |
D372G |
probably damaging |
Het |
| Pfkp |
G |
T |
13: 6,655,059 (GRCm39) |
P340Q |
possibly damaging |
Het |
| Plcd3 |
C |
T |
11: 102,964,631 (GRCm39) |
R580Q |
probably damaging |
Het |
| Pou5f2 |
G |
A |
13: 78,173,178 (GRCm39) |
R40Q |
probably benign |
Het |
| Ppara |
G |
T |
15: 85,682,079 (GRCm39) |
M258I |
probably benign |
Het |
| Proc |
A |
G |
18: 32,258,208 (GRCm39) |
S246P |
probably damaging |
Het |
| Ptpn21 |
T |
C |
12: 98,681,454 (GRCm39) |
|
probably null |
Het |
| Ripor2 |
T |
C |
13: 24,879,681 (GRCm39) |
F383S |
probably damaging |
Het |
| Rnf39 |
T |
C |
17: 37,256,094 (GRCm39) |
|
probably benign |
Het |
| Sema6c |
C |
A |
3: 95,077,295 (GRCm39) |
|
probably benign |
Het |
| Slc16a5 |
A |
G |
11: 115,360,405 (GRCm39) |
E196G |
probably benign |
Het |
| Slco1c1 |
T |
A |
6: 141,493,550 (GRCm39) |
L313* |
probably null |
Het |
| Slit2 |
T |
C |
5: 48,402,014 (GRCm39) |
F789S |
probably damaging |
Het |
| Spta1 |
A |
G |
1: 174,071,676 (GRCm39) |
M2219V |
probably benign |
Het |
| Sqle |
A |
T |
15: 59,197,920 (GRCm39) |
H380L |
probably damaging |
Het |
| Tek |
T |
C |
4: 94,743,561 (GRCm39) |
Y859H |
probably damaging |
Het |
| Trcg1 |
A |
T |
9: 57,148,595 (GRCm39) |
T56S |
possibly damaging |
Het |
| Ttc23 |
T |
A |
7: 67,316,903 (GRCm39) |
|
probably benign |
Het |
| Ttn |
A |
G |
2: 76,774,648 (GRCm39) |
|
probably benign |
Het |
| Uba1y |
C |
T |
Y: 828,841 (GRCm39) |
R550* |
probably null |
Het |
| Ubqln4 |
T |
C |
3: 88,462,778 (GRCm39) |
V81A |
probably damaging |
Het |
| Ugt2b38 |
C |
T |
5: 87,559,600 (GRCm39) |
E431K |
probably benign |
Het |
| Vmn1r85 |
T |
G |
7: 12,819,010 (GRCm39) |
I45L |
possibly damaging |
Het |
| Vmn2r68 |
T |
G |
7: 84,882,595 (GRCm39) |
S386R |
probably damaging |
Het |
| Washc4 |
A |
G |
10: 83,419,173 (GRCm39) |
T902A |
possibly damaging |
Het |
| Zc3h15 |
G |
A |
2: 83,475,015 (GRCm39) |
A7T |
possibly damaging |
Het |
| Zdhhc19 |
A |
C |
16: 32,316,460 (GRCm39) |
T72P |
probably damaging |
Het |
| Zfp729a |
A |
T |
13: 67,768,070 (GRCm39) |
S720T |
possibly damaging |
Het |
| Zfp729b |
T |
C |
13: 67,740,942 (GRCm39) |
K441R |
probably damaging |
Het |
| Zfy2 |
C |
T |
Y: 2,106,894 (GRCm39) |
G580D |
probably benign |
Het |
| Zfy2 |
T |
A |
Y: 2,117,188 (GRCm39) |
H213L |
probably benign |
Het |
|
| Other mutations in Btrc |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00502:Btrc
|
APN |
19 |
45,515,704 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01691:Btrc
|
APN |
19 |
45,501,117 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02551:Btrc
|
APN |
19 |
45,411,573 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
IGL02719:Btrc
|
APN |
19 |
45,491,589 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03128:Btrc
|
APN |
19 |
45,501,959 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03267:Btrc
|
APN |
19 |
45,507,262 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0145:Btrc
|
UTSW |
19 |
45,411,612 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R0750:Btrc
|
UTSW |
19 |
45,491,585 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1466:Btrc
|
UTSW |
19 |
45,501,821 (GRCm39) |
splice site |
probably benign |
|
|
R1584:Btrc
|
UTSW |
19 |
45,501,821 (GRCm39) |
splice site |
probably benign |
|
|
R1772:Btrc
|
UTSW |
19 |
45,501,100 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1882:Btrc
|
UTSW |
19 |
45,515,839 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1959:Btrc
|
UTSW |
19 |
45,515,782 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1961:Btrc
|
UTSW |
19 |
45,515,782 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2483:Btrc
|
UTSW |
19 |
45,504,497 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4365:Btrc
|
UTSW |
19 |
45,501,919 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4812:Btrc
|
UTSW |
19 |
45,411,603 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R4883:Btrc
|
UTSW |
19 |
45,445,026 (GRCm39) |
missense |
probably benign |
0.09 |
|
R5321:Btrc
|
UTSW |
19 |
45,496,197 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7203:Btrc
|
UTSW |
19 |
45,501,967 (GRCm39) |
splice site |
probably null |
|
|
R7528:Btrc
|
UTSW |
19 |
45,491,525 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R8737:Btrc
|
UTSW |
19 |
45,496,198 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9603:Btrc
|
UTSW |
19 |
45,459,526 (GRCm39) |
missense |
probably benign |
0.01 |
|
| Posted On |
2015-12-18 |
Incidental Mutation