Incidental Mutation 'IGL02861:Ptchd4'
ID362171
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Ptchd4
Ensembl Gene ENSMUSG00000042256
Gene Namepatched domain containing 4
Synonyms3110082D06Rik
Accession Numbers

Ncbi RefSeq: NM_028474.1; MGI: 1920485

Is this an essential gene? Probably non essential (E-score: 0.060) question?
Stock #IGL02861
Quality Score
Status
Chromosome17
Chromosomal Location42315947-42507741 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 42377317 bp
ZygosityHeterozygous
Amino Acid Change Glutamic Acid to Glycine at position 250 (E250G)
Ref Sequence ENSEMBL: ENSMUSP00000047640 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000048691]
Predicted Effect probably damaging
Transcript: ENSMUST00000048691
AA Change: E250G

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000047640
Gene: ENSMUSG00000042256
AA Change: E250G

DomainStartEndE-ValueType
Pfam:Patched 58 867 6.1e-102 PFAM
Pfam:Sterol-sensing 312 464 2.9e-26 PFAM
low complexity region 869 891 N/A INTRINSIC
Coding Region Coverage
Validation Efficiency
Allele List at MGI

All alleles(2) : Targeted(2)

Other mutations in this stock
Total: 44 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930486L24Rik A T 13: 60,853,332 probably benign Het
6430548M08Rik G A 8: 120,150,124 R157H probably damaging Het
Amer3 A G 1: 34,588,125 K482E probably damaging Het
Ankrd11 A T 8: 122,895,827 S429T probably damaging Het
Ano3 T A 2: 110,738,812 N125I probably damaging Het
BC106179 T A 16: 23,223,996 probably benign Het
Bclaf3 T C X: 159,555,528 I457T possibly damaging Het
Cbr3 T G 16: 93,685,119 V121G probably damaging Het
Cd44 A G 2: 102,832,481 probably null Het
Cd72 G A 4: 43,448,332 A316V probably benign Het
Cdc27 A T 11: 104,522,831 probably benign Het
Cdon A T 9: 35,486,957 Q990L probably damaging Het
Clk2 T C 3: 89,173,399 W231R probably damaging Het
Cpsf2 G A 12: 101,999,566 V597I probably benign Het
D630003M21Rik A G 2: 158,200,998 V874A probably benign Het
Daam2 A G 17: 49,469,427 F811L probably damaging Het
Ddx54 T C 5: 120,618,130 probably benign Het
Dysf T A 6: 84,039,537 L59Q probably damaging Het
Eps8 A G 6: 137,499,599 Y601H probably damaging Het
Faf2 T C 13: 54,648,422 Y131H probably damaging Het
Hectd4 T A 5: 121,307,004 D101E possibly damaging Het
Hk2 T C 6: 82,760,158 T30A possibly damaging Het
Il27 A T 7: 126,592,649 L77Q probably damaging Het
Klhdc1 T A 12: 69,251,451 V83D possibly damaging Het
Manba T G 3: 135,570,263 S822A probably benign Het
Mterf2 A C 10: 85,120,331 V143G probably damaging Het
Ncapd3 A G 9: 27,069,899 D895G probably benign Het
Olfr1220 T A 2: 89,097,457 I157L probably benign Het
Olfr429 T A 1: 174,089,036 probably benign Het
Panx1 T C 9: 15,007,805 K253E probably benign Het
Phc1 T A 6: 122,323,789 probably benign Het
Pkd1l2 G A 8: 117,065,745 T436I probably benign Het
Rp1 G T 1: 4,346,152 S1579* probably null Het
Rrp1 A G 10: 78,409,222 probably benign Het
Ryr3 A G 2: 112,652,841 L4187P possibly damaging Het
Serpinc1 A T 1: 160,999,991 I387F probably damaging Het
Slc2a7 G A 4: 150,168,379 C492Y probably benign Het
Slf1 A G 13: 77,126,359 probably benign Het
Spta1 T A 1: 174,211,598 L1169Q probably damaging Het
Stap1 T A 5: 86,071,965 probably benign Het
Taf6 A G 5: 138,183,885 L66P probably damaging Het
Ttn T C 2: 76,802,497 E14071G probably damaging Het
Unk A G 11: 116,056,299 H586R possibly damaging Het
Zfpm2 A C 15: 41,103,266 K917T probably damaging Het
Other mutations in Ptchd4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00539:Ptchd4 APN 17 42316926 nonsense probably null
IGL01360:Ptchd4 APN 17 42317045 missense probably benign 0.09
IGL01814:Ptchd4 APN 17 42503286 missense possibly damaging 0.84
IGL01885:Ptchd4 APN 17 42503602 missense probably damaging 1.00
IGL01929:Ptchd4 APN 17 42503322 missense probably benign 0.02
IGL02371:Ptchd4 APN 17 42316974 missense possibly damaging 0.83
IGL02480:Ptchd4 APN 17 42502540 missense probably benign 0.38
IGL02507:Ptchd4 APN 17 42316873 missense possibly damaging 0.72
IGL02593:Ptchd4 APN 17 42317146 missense probably benign 0.24
IGL02884:Ptchd4 APN 17 42502449 missense possibly damaging 0.86
IGL03384:Ptchd4 APN 17 42502590 missense probably damaging 1.00
PIT4418001:Ptchd4 UTSW 17 42503089 missense probably damaging 1.00
R0030:Ptchd4 UTSW 17 42317108 nonsense probably null
R0243:Ptchd4 UTSW 17 42503416 missense probably damaging 1.00
R0398:Ptchd4 UTSW 17 42377259 missense possibly damaging 0.95
R0513:Ptchd4 UTSW 17 42503746 missense probably benign 0.14
R0630:Ptchd4 UTSW 17 42377185 missense probably benign 0.17
R0662:Ptchd4 UTSW 17 42502576 missense probably damaging 1.00
R1004:Ptchd4 UTSW 17 42377602 missense probably benign 0.00
R1433:Ptchd4 UTSW 17 42503715 missense possibly damaging 0.75
R1451:Ptchd4 UTSW 17 42502918 missense probably damaging 0.99
R1522:Ptchd4 UTSW 17 42503542 missense probably damaging 1.00
R1901:Ptchd4 UTSW 17 42503616 missense probably benign 0.10
R1902:Ptchd4 UTSW 17 42503616 missense probably benign 0.10
R2135:Ptchd4 UTSW 17 42317074 missense probably benign 0.01
R3935:Ptchd4 UTSW 17 42503489 missense possibly damaging 0.80
R4184:Ptchd4 UTSW 17 42502759 missense probably damaging 0.99
R4552:Ptchd4 UTSW 17 42502455 missense probably benign 0.00
R4573:Ptchd4 UTSW 17 42502777 missense probably benign 0.26
R5100:Ptchd4 UTSW 17 42503676 missense possibly damaging 0.59
R5640:Ptchd4 UTSW 17 42503135 missense possibly damaging 0.73
R6213:Ptchd4 UTSW 17 42377360 missense probably benign 0.00
R6704:Ptchd4 UTSW 17 42317040 missense probably benign 0.00
R7011:Ptchd4 UTSW 17 42503868 missense probably benign 0.19
R7017:Ptchd4 UTSW 17 42502735 missense probably damaging 1.00
R7185:Ptchd4 UTSW 17 42503188 missense probably damaging 1.00
R8112:Ptchd4 UTSW 17 42503175 missense probably benign 0.25
R8153:Ptchd4 UTSW 17 42503896 missense probably benign 0.31
R8220:Ptchd4 UTSW 17 42502663 missense probably benign 0.00
X0062:Ptchd4 UTSW 17 42377464 missense probably damaging 0.98
Posted On2015-12-18