Incidental Mutation 'IGL02864:Hapln3'
ID 362269
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Hapln3
Ensembl Gene ENSMUSG00000030606
Gene Name hyaluronan and proteoglycan link protein 3
Synonyms Lpr3, 4930554N11Rik
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.072) question?
Stock # IGL02864
Quality Score
Status
Chromosome 7
Chromosomal Location 79115102-79131018 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to T at 79118064 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Tryptophan to Arginine at position 113 (W113R)
Ref Sequence ENSEMBL: ENSMUSP00000032827 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000032827] [ENSMUST00000032835] [ENSMUST00000205782] [ENSMUST00000206092]
AlphaFold Q80WM5
Predicted Effect probably benign
Transcript: ENSMUST00000032827
AA Change: W113R

PolyPhen 2 Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)
SMART Domains Protein: ENSMUSP00000032827
Gene: ENSMUSG00000030606
AA Change: W113R

DomainStartEndE-ValueType
signal peptide 1 17 N/A INTRINSIC
IGv 65 148 3.28e-8 SMART
LINK 164 261 1.78e-46 SMART
LINK 265 357 3.14e-47 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000032835
SMART Domains Protein: ENSMUSP00000032835
Gene: ENSMUSG00000030607

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
IGv 46 135 3.46e-7 SMART
LINK 151 248 1.76e-59 SMART
LINK 252 350 4.13e-65 SMART
LINK 485 582 1.03e-51 SMART
LINK 586 684 9.58e-61 SMART
low complexity region 767 794 N/A INTRINSIC
low complexity region 845 859 N/A INTRINSIC
low complexity region 890 904 N/A INTRINSIC
low complexity region 913 930 N/A INTRINSIC
low complexity region 966 987 N/A INTRINSIC
low complexity region 1455 1468 N/A INTRINSIC
low complexity region 1484 1495 N/A INTRINSIC
low complexity region 1707 1720 N/A INTRINSIC
low complexity region 1808 1823 N/A INTRINSIC
low complexity region 1904 1915 N/A INTRINSIC
CLECT 1922 2043 2.13e-37 SMART
CCP 2049 2105 9.32e-11 SMART
low complexity region 2118 2130 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000205782
AA Change: M194K

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000206092
AA Change: M194K

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000206402
Predicted Effect probably benign
Transcript: ENSMUST00000206779
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the hyaluronan and proteoglycan binding link protein gene family. The protein encoded by this gene may function in hyaluronic acid binding and cell adhesion. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 38 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca4 A G 3: 122,143,431 R347G probably damaging Het
Actl11 G A 9: 107,928,987 A170T probably benign Het
Alpk2 T C 18: 65,307,599 D241G probably benign Het
Arap2 A T 5: 62,677,965 W745R probably damaging Het
Arhgef7 G A 8: 11,815,247 V401I possibly damaging Het
Cacna1d A G 14: 30,051,706 V1709A probably benign Het
Ccl20 T C 1: 83,118,078 probably null Het
Cd209d C T 8: 3,877,122 V48I probably benign Het
Cttnbp2 T C 6: 18,374,549 N1559S probably benign Het
Dnah9 T C 11: 66,061,003 Y1890C probably damaging Het
Dsel A T 1: 111,859,214 M1197K probably damaging Het
Dtl A T 1: 191,556,826 S259T probably benign Het
Fbxw10 G A 11: 62,873,523 G672D probably damaging Het
Fhod1 C T 8: 105,337,164 probably benign Het
Gm10424 G T 5: 95,270,684 A151E possibly damaging Het
Gstk1 A G 6: 42,247,753 Y135C possibly damaging Het
Gtpbp2 G A 17: 46,165,594 C282Y probably benign Het
Ifng A G 10: 118,442,656 Y74C probably damaging Het
Kyat1 C A 2: 30,192,077 probably benign Het
Las1l A T X: 95,947,840 D308E possibly damaging Het
Mdh1b T A 1: 63,721,603 T100S probably benign Het
Nrap A T 19: 56,350,374 M810K probably damaging Het
Otof T C 5: 30,386,341 D593G probably damaging Het
Pnma5 A T X: 73,035,851 D408E probably benign Het
Psen2 T C 1: 180,245,703 T18A probably benign Het
Ptk7 A T 17: 46,572,733 V802E probably damaging Het
Setd1b G A 5: 123,158,939 probably benign Het
Snap91 T C 9: 86,838,088 N132S possibly damaging Het
Spag9 A G 11: 94,106,661 H675R probably damaging Het
Tpra1 C A 6: 88,911,886 P350H probably damaging Het
Trim43a C T 9: 88,588,112 R324C probably benign Het
Ttn G T 2: 76,936,751 H3023Q probably benign Het
Ttn T C 2: 76,736,331 I28073V probably benign Het
Vmn1r21 A G 6: 57,843,676 V261A probably benign Het
Vwa5b1 G A 4: 138,608,975 P103S probably benign Het
Wars A G 12: 108,882,865 M52T probably benign Het
Zcchc2 C T 1: 106,016,084 H460Y probably damaging Het
Zscan12 G T 13: 21,368,560 V185F probably benign Het
Other mutations in Hapln3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00095:Hapln3 APN 7 79121983 missense probably damaging 1.00
IGL01412:Hapln3 APN 7 79117436 splice site probably null
IGL02141:Hapln3 APN 7 79118145 missense probably damaging 0.99
IGL02675:Hapln3 APN 7 79117848 critical splice donor site probably null
IGL02894:Hapln3 APN 7 79121773 missense probably benign 0.03
R1271:Hapln3 UTSW 7 79118016 missense probably damaging 1.00
R1337:Hapln3 UTSW 7 79118076 missense probably benign 0.06
R1351:Hapln3 UTSW 7 79121960 missense probably damaging 1.00
R1686:Hapln3 UTSW 7 79121890 missense probably benign 0.13
R1718:Hapln3 UTSW 7 79123450 missense unknown
R3103:Hapln3 UTSW 7 79121736 missense probably benign 0.07
R5625:Hapln3 UTSW 7 79117258 splice site probably null
R5669:Hapln3 UTSW 7 79117496 splice site probably null
R5862:Hapln3 UTSW 7 79121891 missense possibly damaging 0.84
R5875:Hapln3 UTSW 7 79121973 missense probably benign 0.03
R7129:Hapln3 UTSW 7 79121824 missense probably damaging 1.00
R7439:Hapln3 UTSW 7 79117269 missense probably benign 0.00
R7713:Hapln3 UTSW 7 79117373 missense probably benign 0.00
R8894:Hapln3 UTSW 7 79117491 missense probably benign 0.00
R8896:Hapln3 UTSW 7 79117491 missense probably benign 0.00
R8933:Hapln3 UTSW 7 79117630 unclassified probably benign
R9114:Hapln3 UTSW 7 79121964 missense probably benign 0.00
R9367:Hapln3 UTSW 7 79121707 missense probably damaging 0.98
Posted On 2015-12-18