Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02931:Lrrn1'

364092

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Lrrn1

Ensembl Gene

ENSMUSG00000034648

Gene Name

leucine rich repeat protein 1, neuronal

Synonyms

2810047E21Rik, NLRR-1

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.339) question?

Stock #

IGL02931

Quality Score

Status

Chromosome

Chromosomal Location

107506729-107547175 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 107544709 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 169 (L169P)

Ref Sequence

ENSEMBL: ENSMUSP00000037096 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000049285]

AlphaFold

Q61809

Predicted Effect

probably damaging
Transcript: ENSMUST00000049285
AA Change: L169P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000037096
Gene: ENSMUSG00000034648
AA Change: L169P

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
LRRNT	31	76	2.89e-1	SMART
LRR	94	117	1.06e1	SMART
LRR	118	141	1.89e-1	SMART
LRR_TYP	142	165	4.3e-5	SMART
LRR	166	189	1.76e-1	SMART
LRR	214	237	4.09e1	SMART
LRR	238	261	1.53e1	SMART
LRR	262	285	2.63e0	SMART
LRR	311	335	1.45e2	SMART
LRR	336	359	4.21e1	SMART
LRRCT	371	423	2.14e-10	SMART
IGc2	438	506	6.34e-15	SMART
FN3	523	605	8.71e-2	SMART
transmembrane domain	631	653	N/A	INTRINSIC
low complexity region	690	701	N/A	INTRINSIC

Coding Region Coverage

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous null mutant mice exhibited decreased exploratory activity and the female mutants exhibited an increased anxiety-like response during open field testing. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adcy1	G	A	11: 7,029,012 (GRCm39)	R254Q	probably benign	Het
Adgrv1	T	C	13: 81,727,833 (GRCm39)	Y269C	probably damaging	Het
Apol7a	C	A	15: 77,277,650 (GRCm39)	E33*	probably null	Het
Arhgap29	T	C	3: 121,786,509 (GRCm39)	V358A	probably benign	Het
B3galt1	T	C	2: 67,948,728 (GRCm39)	S148P	probably damaging	Het
BC061237	A	G	14: 44,740,779 (GRCm39)	N60D	possibly damaging	Het
Bcl9l	C	T	9: 44,412,047 (GRCm39)	P11L	probably damaging	Het
Ccdc89	A	C	7: 90,076,110 (GRCm39)	K107Q	probably benign	Het
Col27a1	T	C	4: 63,249,663 (GRCm39)		probably benign	Het
Col5a2	T	C	1: 45,424,225 (GRCm39)	D1067G	probably damaging	Het
Col9a2	A	T	4: 120,910,389 (GRCm39)	R511S	probably benign	Het
Disp3	G	A	4: 148,333,658 (GRCm39)	S1060F	possibly damaging	Het
Dusp8	T	C	7: 141,636,667 (GRCm39)	T308A	probably benign	Het
Ern1	T	C	11: 106,314,266 (GRCm39)	N178S	probably damaging	Het
Gas6	C	A	8: 13,527,136 (GRCm39)	C204F	probably damaging	Het
Gga1	T	C	15: 78,777,522 (GRCm39)	S558P	possibly damaging	Het
Gli1	T	C	10: 127,168,279 (GRCm39)	T525A	probably benign	Het
Gse1	A	G	8: 121,304,808 (GRCm39)		probably benign	Het
Hmcn1	G	A	1: 150,532,958 (GRCm39)	S3075L	probably benign	Het
Hnf4a	G	A	2: 163,408,037 (GRCm39)		probably benign	Het
Htt	A	T	5: 35,034,097 (GRCm39)	E1894D	probably damaging	Het
Kcnh8	G	A	17: 53,263,650 (GRCm39)	E716K	probably benign	Het
Kntc1	A	G	5: 123,937,874 (GRCm39)	Y1524C	probably damaging	Het
Krtap9-5	A	G	11: 99,839,931 (GRCm39)	T211A	unknown	Het
Lin54	T	C	5: 100,628,180 (GRCm39)	I8V	possibly damaging	Het
Lipe	A	G	7: 25,082,760 (GRCm39)		probably benign	Het
Lpin2	T	A	17: 71,545,678 (GRCm39)	V508E	probably damaging	Het
Lrrc9	C	A	12: 72,500,923 (GRCm39)	H216Q	probably damaging	Het
Map9	C	A	3: 82,284,428 (GRCm39)	T334K	possibly damaging	Het
Msantd5f1	G	A	4: 73,605,602 (GRCm39)	A338T	probably damaging	Het
Mst1	A	T	9: 107,961,841 (GRCm39)		probably null	Het
Mtor	T	A	4: 148,549,421 (GRCm39)	F602I	probably benign	Het
Mylpf	T	A	7: 126,812,798 (GRCm39)	D98E	probably benign	Het
Naca	C	A	10: 127,883,551 (GRCm39)	Q2059K	probably damaging	Het
Nefh	G	A	11: 4,891,356 (GRCm39)	T421I	possibly damaging	Het
Nlrp4g	T	A	9: 124,348,940 (GRCm38)		noncoding transcript	Het
Npat	C	T	9: 53,482,341 (GRCm39)	Q1350*	probably null	Het
Oaz3	T	C	3: 94,342,287 (GRCm39)	N123S	probably benign	Het
Patj	A	G	4: 98,299,410 (GRCm39)		probably benign	Het
Pgap6	T	A	17: 26,336,923 (GRCm39)	F280L	probably benign	Het
Piezo1	A	C	8: 123,210,258 (GRCm39)	D2224E	probably damaging	Het
Pnpla7	A	T	2: 24,905,241 (GRCm39)	I610F	possibly damaging	Het
Psapl1	A	T	5: 36,362,233 (GRCm39)	D275V	probably damaging	Het
Ptpdc1	T	A	13: 48,744,095 (GRCm39)		probably benign	Het
Rac2	T	C	15: 78,454,947 (GRCm39)	E31G	possibly damaging	Het
Sdhc	T	C	1: 170,971,124 (GRCm39)		probably benign	Het
Smim23	G	T	11: 32,770,667 (GRCm39)	P80T	probably damaging	Het
Snupn	C	T	9: 56,864,364 (GRCm39)	T21I	probably benign	Het
Tjp2	A	G	19: 24,073,996 (GRCm39)	V1097A	probably benign	Het
Ttc16	A	G	2: 32,661,939 (GRCm39)	Y164H	probably damaging	Het
Txlnb	A	G	10: 17,703,730 (GRCm39)	E296G	probably damaging	Het
Ube2l6	G	A	2: 84,633,195 (GRCm39)	V34M	probably damaging	Het
Vwf	A	C	6: 125,592,931 (GRCm39)	S764R	possibly damaging	Het
Zfand3	A	G	17: 30,411,611 (GRCm39)	S146G	probably benign	Het
Zfp280d	T	G	9: 72,203,307 (GRCm39)	F18L	probably benign	Het

Other mutations in Lrrn1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00834:Lrrn1	APN	6	107,545,269 (GRCm39)	missense	probably benign	0.06
IGL00949:Lrrn1	APN	6	107,546,261 (GRCm39)	missense	probably benign	0.15
IGL01594:Lrrn1	APN	6	107,544,454 (GRCm39)	missense	probably damaging	0.99
IGL02814:Lrrn1	APN	6	107,544,313 (GRCm39)	missense	probably damaging	1.00
IGL02824:Lrrn1	APN	6	107,545,495 (GRCm39)	missense	possibly damaging	0.57
R0399:Lrrn1	UTSW	6	107,546,081 (GRCm39)	missense	probably benign
R1109:Lrrn1	UTSW	6	107,544,225 (GRCm39)	missense	probably benign
R1620:Lrrn1	UTSW	6	107,545,327 (GRCm39)	missense	probably damaging	1.00
R1826:Lrrn1	UTSW	6	107,544,529 (GRCm39)	missense	probably benign	0.05
R1893:Lrrn1	UTSW	6	107,545,083 (GRCm39)	missense	possibly damaging	0.82
R2327:Lrrn1	UTSW	6	107,545,794 (GRCm39)	missense	probably benign	0.05
R3684:Lrrn1	UTSW	6	107,544,910 (GRCm39)	missense	probably benign	0.13
R3757:Lrrn1	UTSW	6	107,546,169 (GRCm39)	missense	possibly damaging	0.81
R4538:Lrrn1	UTSW	6	107,545,598 (GRCm39)	missense	probably benign	0.21
R4922:Lrrn1	UTSW	6	107,545,311 (GRCm39)	missense	probably damaging	1.00
R4946:Lrrn1	UTSW	6	107,545,851 (GRCm39)	missense	probably benign	0.16
R4970:Lrrn1	UTSW	6	107,546,305 (GRCm39)	missense	probably benign	0.06
R4977:Lrrn1	UTSW	6	107,545,668 (GRCm39)	missense	probably benign
R5121:Lrrn1	UTSW	6	107,546,168 (GRCm39)	missense	possibly damaging	0.89
R5186:Lrrn1	UTSW	6	107,546,185 (GRCm39)	missense	probably damaging	1.00
R5625:Lrrn1	UTSW	6	107,544,315 (GRCm39)	missense	probably damaging	0.99
R5736:Lrrn1	UTSW	6	107,544,345 (GRCm39)	missense	probably damaging	1.00
R5873:Lrrn1	UTSW	6	107,545,936 (GRCm39)	missense	probably damaging	0.98
R5949:Lrrn1	UTSW	6	107,544,465 (GRCm39)	missense	probably benign	0.00
R6046:Lrrn1	UTSW	6	107,545,488 (GRCm39)	missense	probably benign	0.00
R6370:Lrrn1	UTSW	6	107,546,185 (GRCm39)	missense	probably damaging	1.00
R7138:Lrrn1	UTSW	6	107,545,336 (GRCm39)	missense	probably damaging	1.00
R7169:Lrrn1	UTSW	6	107,544,565 (GRCm39)	missense	probably damaging	1.00
R7413:Lrrn1	UTSW	6	107,546,083 (GRCm39)	missense	probably benign	0.00
R7449:Lrrn1	UTSW	6	107,545,482 (GRCm39)	missense	possibly damaging	0.91
R7969:Lrrn1	UTSW	6	107,544,811 (GRCm39)	missense	probably damaging	1.00
R8077:Lrrn1	UTSW	6	107,545,783 (GRCm39)	missense	probably damaging	0.99
R8288:Lrrn1	UTSW	6	107,543,955 (GRCm39)	start gained	probably benign
R8420:Lrrn1	UTSW	6	107,546,294 (GRCm39)	missense	probably benign	0.00
R8725:Lrrn1	UTSW	6	107,544,303 (GRCm39)	nonsense	probably null
R9007:Lrrn1	UTSW	6	107,544,820 (GRCm39)	missense	probably damaging	0.99
R9133:Lrrn1	UTSW	6	107,544,568 (GRCm39)	missense	probably damaging	1.00
R9367:Lrrn1	UTSW	6	107,545,093 (GRCm39)	missense	probably damaging	0.98
R9373:Lrrn1	UTSW	6	107,545,465 (GRCm39)	missense	possibly damaging	0.82
R9475:Lrrn1	UTSW	6	107,545,261 (GRCm39)	missense	probably damaging	1.00
R9513:Lrrn1	UTSW	6	107,545,505 (GRCm39)	missense	probably benign	0.04
R9516:Lrrn1	UTSW	6	107,545,505 (GRCm39)	missense	probably benign	0.04
R9549:Lrrn1	UTSW	6	107,545,978 (GRCm39)	missense	probably damaging	1.00

Posted On

2015-12-18