Incidental Mutation 'IGL02959:Agap1'
| ID |
365281 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Agap1
|
| Ensembl Gene |
ENSMUSG00000055013 |
| Gene Name |
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 |
| Synonyms |
Ggap1, Centg2 |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.118)
|
| Stock # |
IGL02959
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
1 |
| Chromosomal Location |
89382533-89823004 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to T
at 89770913 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Leucine
at position 635
(V635L)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000140599
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000027521]
[ENSMUST00000074945]
[ENSMUST00000190096]
|
| AlphaFold |
Q8BXK8 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000027521
AA Change: V688L
PolyPhen 2
Score 0.835 (Sensitivity: 0.84; Specificity: 0.93)
|
| SMART Domains |
Protein: ENSMUSP00000027521
Gene: ENSMUSG00000055013
AA Change: V688L
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ras
|
73 |
231 |
1.1e-18 |
PFAM |
|
low complexity region
|
269 |
289 |
N/A |
INTRINSIC |
|
PH
|
347 |
590 |
1.36e-15 |
SMART |
|
ArfGap
|
609 |
729 |
4.58e-51 |
SMART |
|
ANK
|
768 |
797 |
1.83e-3 |
SMART |
|
ANK
|
801 |
832 |
1.33e2 |
SMART |
|
low complexity region
|
840 |
852 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000074945
AA Change: V501L
PolyPhen 2
Score 0.911 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000074478
Gene: ENSMUSG00000055013
AA Change: V501L
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Miro
|
73 |
181 |
5e-24 |
PFAM |
|
Pfam:Ras
|
73 |
231 |
3e-19 |
PFAM |
|
low complexity region
|
269 |
289 |
N/A |
INTRINSIC |
|
PH
|
347 |
537 |
7.93e-17 |
SMART |
|
ArfGap
|
556 |
676 |
4.58e-51 |
SMART |
|
ANK
|
715 |
744 |
1.83e-3 |
SMART |
|
ANK
|
748 |
779 |
1.33e2 |
SMART |
|
low complexity region
|
787 |
799 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000190096
AA Change: V635L
PolyPhen 2
Score 0.938 (Sensitivity: 0.80; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000140599
Gene: ENSMUSG00000055013
AA Change: V635L
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Miro
|
73 |
181 |
5e-24 |
PFAM |
|
Pfam:Ras
|
73 |
231 |
3e-19 |
PFAM |
|
low complexity region
|
269 |
289 |
N/A |
INTRINSIC |
|
PH
|
347 |
537 |
7.93e-17 |
SMART |
|
ArfGap
|
556 |
676 |
4.58e-51 |
SMART |
|
ANK
|
715 |
744 |
1.83e-3 |
SMART |
|
ANK
|
748 |
779 |
1.33e2 |
SMART |
|
low complexity region
|
787 |
799 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of an ADP-ribosylation factor GTPase-activating protein family involved in membrane trafficking and cytoskeleton dynamics. This gene functions as a direct regulator of the adaptor-related protein complex 3 on endosomes. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 46 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A2ml1 |
G |
T |
6: 128,544,023 (GRCm39) |
A506D |
probably benign |
Het |
| Akr1c12 |
T |
C |
13: 4,329,331 (GRCm39) |
K9E |
probably benign |
Het |
| Alms1 |
T |
A |
6: 85,606,034 (GRCm39) |
Y2561* |
probably null |
Het |
| Atm |
T |
C |
9: 53,382,718 (GRCm39) |
H1957R |
probably damaging |
Het |
| Bcr |
T |
C |
10: 74,996,222 (GRCm39) |
F922S |
probably benign |
Het |
| Cfap44 |
T |
A |
16: 44,291,230 (GRCm39) |
|
probably benign |
Het |
| Chil5 |
A |
G |
3: 105,926,906 (GRCm39) |
V243A |
probably damaging |
Het |
| Csmd1 |
A |
G |
8: 15,960,465 (GRCm39) |
C3317R |
probably damaging |
Het |
| Dsc1 |
T |
C |
18: 20,241,942 (GRCm39) |
K133R |
probably damaging |
Het |
| Ecm1 |
T |
A |
3: 95,644,989 (GRCm39) |
Q136L |
probably damaging |
Het |
| Fscn3 |
C |
A |
6: 28,435,997 (GRCm39) |
A431E |
possibly damaging |
Het |
| Gas7 |
C |
T |
11: 67,565,061 (GRCm39) |
|
probably benign |
Het |
| Gbx2 |
A |
G |
1: 89,856,517 (GRCm39) |
V291A |
probably damaging |
Het |
| Hipk3 |
G |
A |
2: 104,301,604 (GRCm39) |
T196M |
probably damaging |
Het |
| Il20ra |
T |
A |
10: 19,634,789 (GRCm39) |
N343K |
probably benign |
Het |
| Il24 |
C |
T |
1: 130,813,470 (GRCm39) |
W42* |
probably null |
Het |
| Kif13b |
A |
T |
14: 65,005,166 (GRCm39) |
I1153F |
probably damaging |
Het |
| Krt1c |
A |
T |
15: 101,719,763 (GRCm39) |
S636T |
unknown |
Het |
| Or11g24 |
A |
T |
14: 50,662,389 (GRCm39) |
M138L |
possibly damaging |
Het |
| Or13a25 |
C |
T |
7: 140,247,463 (GRCm39) |
P81S |
probably damaging |
Het |
| Or14c40 |
T |
C |
7: 86,313,737 (GRCm39) |
F289S |
probably damaging |
Het |
| Or4k52 |
T |
A |
2: 111,610,955 (GRCm39) |
C97S |
probably damaging |
Het |
| Or6d15 |
A |
T |
6: 116,559,505 (GRCm39) |
M134K |
probably damaging |
Het |
| Osmr |
T |
C |
15: 6,845,378 (GRCm39) |
D796G |
possibly damaging |
Het |
| Peli2 |
A |
T |
14: 48,477,754 (GRCm39) |
T99S |
probably benign |
Het |
| Pi4k2a |
A |
T |
19: 42,101,510 (GRCm39) |
K317N |
probably benign |
Het |
| Pik3r1 |
T |
G |
13: 101,894,037 (GRCm39) |
D44A |
probably benign |
Het |
| Pkhd1 |
G |
T |
1: 20,678,640 (GRCm39) |
S96* |
probably null |
Het |
| Plekha5 |
A |
G |
6: 140,489,904 (GRCm39) |
E9G |
probably damaging |
Het |
| Plekha8 |
T |
C |
6: 54,592,254 (GRCm39) |
F71S |
probably damaging |
Het |
| Polq |
G |
T |
16: 36,906,928 (GRCm39) |
L2296F |
probably damaging |
Het |
| Rbm5 |
G |
A |
9: 107,631,384 (GRCm39) |
|
probably benign |
Het |
| Rc3h2 |
T |
C |
2: 37,295,366 (GRCm39) |
K217E |
probably damaging |
Het |
| Scrib |
A |
G |
15: 75,937,056 (GRCm39) |
L350P |
probably damaging |
Het |
| Slc4a10 |
T |
A |
2: 62,098,487 (GRCm39) |
S540R |
probably damaging |
Het |
| Smc3 |
G |
T |
19: 53,611,988 (GRCm39) |
V354L |
probably benign |
Het |
| Smurf1 |
T |
A |
5: 144,836,199 (GRCm39) |
I105F |
probably damaging |
Het |
| Stx7 |
G |
T |
10: 24,031,247 (GRCm39) |
R17L |
probably benign |
Het |
| Tbca |
C |
T |
13: 94,979,203 (GRCm39) |
R74C |
probably benign |
Het |
| Tmem92 |
T |
C |
11: 94,669,504 (GRCm39) |
Q153R |
possibly damaging |
Het |
| Trim41 |
C |
A |
11: 48,698,307 (GRCm39) |
G553V |
probably damaging |
Het |
| Trim75 |
A |
T |
8: 65,435,417 (GRCm39) |
N344K |
possibly damaging |
Het |
| Tsr1 |
A |
G |
11: 74,791,075 (GRCm39) |
D218G |
probably benign |
Het |
| Ubr2 |
A |
C |
17: 47,286,877 (GRCm39) |
V474G |
probably damaging |
Het |
| Unc45a |
T |
G |
7: 79,982,721 (GRCm39) |
|
probably benign |
Het |
| Zfp609 |
C |
T |
9: 65,610,675 (GRCm39) |
A763T |
probably benign |
Het |
|
| Other mutations in Agap1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00158:Agap1
|
APN |
1 |
89,591,518 (GRCm39) |
splice site |
probably benign |
|
|
IGL00310:Agap1
|
APN |
1 |
89,815,392 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01104:Agap1
|
APN |
1 |
89,653,797 (GRCm39) |
splice site |
probably benign |
|
|
IGL02227:Agap1
|
APN |
1 |
89,591,497 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL03303:Agap1
|
APN |
1 |
89,592,874 (GRCm39) |
missense |
probably damaging |
1.00 |
|
K3955:Agap1
|
UTSW |
1 |
89,815,326 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0030:Agap1
|
UTSW |
1 |
89,816,466 (GRCm39) |
nonsense |
probably null |
|
|
R0234:Agap1
|
UTSW |
1 |
89,598,934 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0234:Agap1
|
UTSW |
1 |
89,598,934 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0400:Agap1
|
UTSW |
1 |
89,770,972 (GRCm39) |
splice site |
probably benign |
|
|
R1104:Agap1
|
UTSW |
1 |
89,716,962 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1160:Agap1
|
UTSW |
1 |
89,770,876 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1439:Agap1
|
UTSW |
1 |
89,770,908 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1454:Agap1
|
UTSW |
1 |
89,765,528 (GRCm39) |
splice site |
probably null |
|
|
R1644:Agap1
|
UTSW |
1 |
89,591,452 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R1984:Agap1
|
UTSW |
1 |
89,694,045 (GRCm39) |
missense |
probably benign |
|
|
R2141:Agap1
|
UTSW |
1 |
89,765,477 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R3966:Agap1
|
UTSW |
1 |
89,762,183 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4195:Agap1
|
UTSW |
1 |
89,762,261 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4669:Agap1
|
UTSW |
1 |
89,765,528 (GRCm39) |
splice site |
probably null |
|
|
R4951:Agap1
|
UTSW |
1 |
89,537,225 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5525:Agap1
|
UTSW |
1 |
89,671,495 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R5843:Agap1
|
UTSW |
1 |
89,537,272 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R5930:Agap1
|
UTSW |
1 |
89,770,818 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6030:Agap1
|
UTSW |
1 |
89,558,156 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6030:Agap1
|
UTSW |
1 |
89,558,156 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6879:Agap1
|
UTSW |
1 |
89,694,177 (GRCm39) |
missense |
probably benign |
0.25 |
|
R7027:Agap1
|
UTSW |
1 |
89,816,444 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7207:Agap1
|
UTSW |
1 |
89,770,821 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R7268:Agap1
|
UTSW |
1 |
89,694,070 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7289:Agap1
|
UTSW |
1 |
89,383,153 (GRCm39) |
start codon destroyed |
probably null |
0.01 |
|
R7689:Agap1
|
UTSW |
1 |
89,762,188 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7690:Agap1
|
UTSW |
1 |
89,770,793 (GRCm39) |
missense |
probably benign |
0.43 |
|
R7801:Agap1
|
UTSW |
1 |
89,558,207 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7849:Agap1
|
UTSW |
1 |
89,558,141 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8364:Agap1
|
UTSW |
1 |
89,815,396 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8491:Agap1
|
UTSW |
1 |
89,537,294 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9016:Agap1
|
UTSW |
1 |
89,694,188 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9040:Agap1
|
UTSW |
1 |
89,671,466 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R9254:Agap1
|
UTSW |
1 |
89,653,741 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9477:Agap1
|
UTSW |
1 |
89,765,485 (GRCm39) |
missense |
probably benign |
|
|
RF015:Agap1
|
UTSW |
1 |
89,561,985 (GRCm39) |
nonsense |
probably null |
|
|
| Posted On |
2015-12-18 |
Incidental Mutation