Incidental Mutation 'IGL02959:Rbm5'
| ID |
365289 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Rbm5
|
| Ensembl Gene |
ENSMUSG00000032580 |
| Gene Name |
RNA binding motif protein 5 |
| Synonyms |
D030069N10Rik |
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.928)
|
| Stock # |
IGL02959
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
9 |
| Chromosomal Location |
107617694-107648228 bp(-) (GRCm39) |
| Type of Mutation |
unclassified |
| DNA Base Change (assembly) |
G to A
at 107631384 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000035199]
[ENSMUST00000182304]
[ENSMUST00000182371]
[ENSMUST00000182421]
[ENSMUST00000182659]
[ENSMUST00000192130]
|
| AlphaFold |
Q91YE7 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000035199
|
| SMART Domains |
Protein: ENSMUSP00000035199
Gene: ENSMUSG00000032580
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
21 |
74 |
N/A |
INTRINSIC |
|
RRM
|
99 |
174 |
5.98e-13 |
SMART |
|
ZnF_RBZ
|
183 |
207 |
1.53e-6 |
SMART |
|
RRM
|
232 |
311 |
9.5e-7 |
SMART |
|
low complexity region
|
329 |
355 |
N/A |
INTRINSIC |
|
low complexity region
|
362 |
385 |
N/A |
INTRINSIC |
|
low complexity region
|
393 |
410 |
N/A |
INTRINSIC |
|
low complexity region
|
425 |
446 |
N/A |
INTRINSIC |
|
Blast:RRM_2
|
483 |
506 |
1e-5 |
BLAST |
|
low complexity region
|
520 |
536 |
N/A |
INTRINSIC |
|
low complexity region
|
569 |
581 |
N/A |
INTRINSIC |
|
low complexity region
|
627 |
641 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
647 |
672 |
5.2e0 |
SMART |
|
coiled coil region
|
673 |
707 |
N/A |
INTRINSIC |
|
G_patch
|
741 |
787 |
1.85e-21 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182007
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182304
|
| SMART Domains |
Protein: ENSMUSP00000138380
Gene: ENSMUSG00000032580
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
21 |
74 |
N/A |
INTRINSIC |
|
RRM
|
99 |
174 |
5.98e-13 |
SMART |
|
ZnF_RBZ
|
183 |
207 |
1.53e-6 |
SMART |
|
PDB:2LKZ|A
|
231 |
251 |
5e-6 |
PDB |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182332
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182371
|
| SMART Domains |
Protein: ENSMUSP00000138119
Gene: ENSMUSG00000032580
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
21 |
74 |
N/A |
INTRINSIC |
|
SCOP:d1h6kx_
|
96 |
138 |
6e-3 |
SMART |
|
Blast:RRM
|
99 |
136 |
3e-19 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182421
|
| SMART Domains |
Protein: ENSMUSP00000138778
Gene: ENSMUSG00000032580
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
21 |
59 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182422
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000194801
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182659
|
| SMART Domains |
Protein: ENSMUSP00000138379
Gene: ENSMUSG00000032580
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
21 |
74 |
N/A |
INTRINSIC |
|
RRM
|
99 |
174 |
5.98e-13 |
SMART |
|
ZnF_RBZ
|
183 |
207 |
1.53e-6 |
SMART |
|
RRM
|
232 |
311 |
9.5e-7 |
SMART |
|
low complexity region
|
329 |
355 |
N/A |
INTRINSIC |
|
low complexity region
|
362 |
385 |
N/A |
INTRINSIC |
|
low complexity region
|
393 |
410 |
N/A |
INTRINSIC |
|
low complexity region
|
425 |
446 |
N/A |
INTRINSIC |
|
Blast:RRM_2
|
483 |
506 |
1e-5 |
BLAST |
|
low complexity region
|
520 |
536 |
N/A |
INTRINSIC |
|
low complexity region
|
569 |
581 |
N/A |
INTRINSIC |
|
low complexity region
|
627 |
641 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
647 |
672 |
5.2e0 |
SMART |
|
coiled coil region
|
673 |
707 |
N/A |
INTRINSIC |
|
G_patch
|
741 |
787 |
1.85e-21 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000183307
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000193342
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000194682
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000192130
|
| SMART Domains |
Protein: ENSMUSP00000142194
Gene: ENSMUSG00000032580
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
21 |
74 |
N/A |
INTRINSIC |
|
SCOP:d1h6kx_
|
96 |
138 |
6e-3 |
SMART |
|
Blast:RRM
|
99 |
136 |
3e-19 |
BLAST |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182836
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182856
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182792
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000194400
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a candidate tumor suppressor gene which encodes a nuclear RNA binding protein that is a component of the spliceosome A complex. The encoded protein plays a role in the induction of cell cycle arrest and apoptosis through pre-mRNA splicing of multiple target genes including the tumor suppressor protein p53. This gene is located within the tumor suppressor region 3p21.3, and may play a role in the inhibition of tumor transformation and progression of several malignancies including lung cancer. [provided by RefSeq, Oct 2011]
PHENOTYPE: Mice homozygous for an ENU-induced allele exhibit male infertility with azoospermia, male germ cell apoptosis, round spermatid arrest and spermatid differentiation arrest. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 46 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A2ml1 |
G |
T |
6: 128,544,023 (GRCm39) |
A506D |
probably benign |
Het |
| Agap1 |
G |
T |
1: 89,770,913 (GRCm39) |
V635L |
possibly damaging |
Het |
| Akr1c12 |
T |
C |
13: 4,329,331 (GRCm39) |
K9E |
probably benign |
Het |
| Alms1 |
T |
A |
6: 85,606,034 (GRCm39) |
Y2561* |
probably null |
Het |
| Atm |
T |
C |
9: 53,382,718 (GRCm39) |
H1957R |
probably damaging |
Het |
| Bcr |
T |
C |
10: 74,996,222 (GRCm39) |
F922S |
probably benign |
Het |
| Cfap44 |
T |
A |
16: 44,291,230 (GRCm39) |
|
probably benign |
Het |
| Chil5 |
A |
G |
3: 105,926,906 (GRCm39) |
V243A |
probably damaging |
Het |
| Csmd1 |
A |
G |
8: 15,960,465 (GRCm39) |
C3317R |
probably damaging |
Het |
| Dsc1 |
T |
C |
18: 20,241,942 (GRCm39) |
K133R |
probably damaging |
Het |
| Ecm1 |
T |
A |
3: 95,644,989 (GRCm39) |
Q136L |
probably damaging |
Het |
| Fscn3 |
C |
A |
6: 28,435,997 (GRCm39) |
A431E |
possibly damaging |
Het |
| Gas7 |
C |
T |
11: 67,565,061 (GRCm39) |
|
probably benign |
Het |
| Gbx2 |
A |
G |
1: 89,856,517 (GRCm39) |
V291A |
probably damaging |
Het |
| Hipk3 |
G |
A |
2: 104,301,604 (GRCm39) |
T196M |
probably damaging |
Het |
| Il20ra |
T |
A |
10: 19,634,789 (GRCm39) |
N343K |
probably benign |
Het |
| Il24 |
C |
T |
1: 130,813,470 (GRCm39) |
W42* |
probably null |
Het |
| Kif13b |
A |
T |
14: 65,005,166 (GRCm39) |
I1153F |
probably damaging |
Het |
| Krt1c |
A |
T |
15: 101,719,763 (GRCm39) |
S636T |
unknown |
Het |
| Or11g24 |
A |
T |
14: 50,662,389 (GRCm39) |
M138L |
possibly damaging |
Het |
| Or13a25 |
C |
T |
7: 140,247,463 (GRCm39) |
P81S |
probably damaging |
Het |
| Or14c40 |
T |
C |
7: 86,313,737 (GRCm39) |
F289S |
probably damaging |
Het |
| Or4k52 |
T |
A |
2: 111,610,955 (GRCm39) |
C97S |
probably damaging |
Het |
| Or6d15 |
A |
T |
6: 116,559,505 (GRCm39) |
M134K |
probably damaging |
Het |
| Osmr |
T |
C |
15: 6,845,378 (GRCm39) |
D796G |
possibly damaging |
Het |
| Peli2 |
A |
T |
14: 48,477,754 (GRCm39) |
T99S |
probably benign |
Het |
| Pi4k2a |
A |
T |
19: 42,101,510 (GRCm39) |
K317N |
probably benign |
Het |
| Pik3r1 |
T |
G |
13: 101,894,037 (GRCm39) |
D44A |
probably benign |
Het |
| Pkhd1 |
G |
T |
1: 20,678,640 (GRCm39) |
S96* |
probably null |
Het |
| Plekha5 |
A |
G |
6: 140,489,904 (GRCm39) |
E9G |
probably damaging |
Het |
| Plekha8 |
T |
C |
6: 54,592,254 (GRCm39) |
F71S |
probably damaging |
Het |
| Polq |
G |
T |
16: 36,906,928 (GRCm39) |
L2296F |
probably damaging |
Het |
| Rc3h2 |
T |
C |
2: 37,295,366 (GRCm39) |
K217E |
probably damaging |
Het |
| Scrib |
A |
G |
15: 75,937,056 (GRCm39) |
L350P |
probably damaging |
Het |
| Slc4a10 |
T |
A |
2: 62,098,487 (GRCm39) |
S540R |
probably damaging |
Het |
| Smc3 |
G |
T |
19: 53,611,988 (GRCm39) |
V354L |
probably benign |
Het |
| Smurf1 |
T |
A |
5: 144,836,199 (GRCm39) |
I105F |
probably damaging |
Het |
| Stx7 |
G |
T |
10: 24,031,247 (GRCm39) |
R17L |
probably benign |
Het |
| Tbca |
C |
T |
13: 94,979,203 (GRCm39) |
R74C |
probably benign |
Het |
| Tmem92 |
T |
C |
11: 94,669,504 (GRCm39) |
Q153R |
possibly damaging |
Het |
| Trim41 |
C |
A |
11: 48,698,307 (GRCm39) |
G553V |
probably damaging |
Het |
| Trim75 |
A |
T |
8: 65,435,417 (GRCm39) |
N344K |
possibly damaging |
Het |
| Tsr1 |
A |
G |
11: 74,791,075 (GRCm39) |
D218G |
probably benign |
Het |
| Ubr2 |
A |
C |
17: 47,286,877 (GRCm39) |
V474G |
probably damaging |
Het |
| Unc45a |
T |
G |
7: 79,982,721 (GRCm39) |
|
probably benign |
Het |
| Zfp609 |
C |
T |
9: 65,610,675 (GRCm39) |
A763T |
probably benign |
Het |
|
| Other mutations in Rbm5 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02041:Rbm5
|
APN |
9 |
107,633,045 (GRCm39) |
unclassified |
probably benign |
|
|
IGL02319:Rbm5
|
APN |
9 |
107,621,064 (GRCm39) |
nonsense |
probably null |
|
|
IGL02567:Rbm5
|
APN |
9 |
107,621,473 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02868:Rbm5
|
APN |
9 |
107,626,899 (GRCm39) |
splice site |
probably benign |
|
|
IGL02943:Rbm5
|
APN |
9 |
107,621,542 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03029:Rbm5
|
APN |
9 |
107,631,652 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
PIT4403001:Rbm5
|
UTSW |
9 |
107,637,535 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0001:Rbm5
|
UTSW |
9 |
107,619,623 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0242:Rbm5
|
UTSW |
9 |
107,628,907 (GRCm39) |
splice site |
probably benign |
|
|
R1170:Rbm5
|
UTSW |
9 |
107,619,696 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1239:Rbm5
|
UTSW |
9 |
107,630,165 (GRCm39) |
unclassified |
probably benign |
|
|
R1297:Rbm5
|
UTSW |
9 |
107,621,441 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1719:Rbm5
|
UTSW |
9 |
107,621,112 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R1764:Rbm5
|
UTSW |
9 |
107,644,763 (GRCm39) |
nonsense |
probably null |
|
|
R1826:Rbm5
|
UTSW |
9 |
107,619,613 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1863:Rbm5
|
UTSW |
9 |
107,627,718 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R4112:Rbm5
|
UTSW |
9 |
107,642,796 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4207:Rbm5
|
UTSW |
9 |
107,627,682 (GRCm39) |
missense |
probably benign |
|
|
R4343:Rbm5
|
UTSW |
9 |
107,629,395 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4441:Rbm5
|
UTSW |
9 |
107,626,887 (GRCm39) |
intron |
probably benign |
|
|
R4621:Rbm5
|
UTSW |
9 |
107,631,345 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4767:Rbm5
|
UTSW |
9 |
107,622,412 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5090:Rbm5
|
UTSW |
9 |
107,637,511 (GRCm39) |
splice site |
probably benign |
|
|
R5404:Rbm5
|
UTSW |
9 |
107,642,752 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5876:Rbm5
|
UTSW |
9 |
107,637,525 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5959:Rbm5
|
UTSW |
9 |
107,629,339 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5983:Rbm5
|
UTSW |
9 |
107,622,141 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5984:Rbm5
|
UTSW |
9 |
107,622,141 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7436:Rbm5
|
UTSW |
9 |
107,627,593 (GRCm39) |
splice site |
probably null |
|
|
R7447:Rbm5
|
UTSW |
9 |
107,623,378 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7867:Rbm5
|
UTSW |
9 |
107,628,930 (GRCm39) |
missense |
probably benign |
0.02 |
|
R9377:Rbm5
|
UTSW |
9 |
107,627,252 (GRCm39) |
missense |
probably benign |
0.07 |
|
R9602:Rbm5
|
UTSW |
9 |
107,629,152 (GRCm39) |
missense |
probably benign |
|
|
R9694:Rbm5
|
UTSW |
9 |
107,622,152 (GRCm39) |
missense |
probably benign |
|
|
| Posted On |
2015-12-18 |
Incidental Mutation