Incidental Mutation 'IGL02967:Acin1'
ID 365627
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Acin1
Ensembl Gene ENSMUSG00000022185
Gene Name apoptotic chromatin condensation inducer 1
Synonyms 2610036I19Rik, 2610510L13Rik, Acinus
Accession Numbers
Essential gene? Probably essential (E-score: 0.932) question?
Stock # IGL02967
Quality Score
Status
Chromosome 14
Chromosomal Location 54879618-54924388 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 54880210 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Alanine at position 574 (V574A)
Ref Sequence ENSEMBL: ENSMUSP00000125776 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000022793] [ENSMUST00000022794] [ENSMUST00000067784] [ENSMUST00000111484] [ENSMUST00000123875] [ENSMUST00000167015] [ENSMUST00000141453] [ENSMUST00000150371] [ENSMUST00000148754] [ENSMUST00000126166] [ENSMUST00000169818]
AlphaFold Q9JIX8
Predicted Effect unknown
Transcript: ENSMUST00000022793
AA Change: V1331A
SMART Domains Protein: ENSMUSP00000022793
Gene: ENSMUSG00000022185
AA Change: V1331A

DomainStartEndE-ValueType
SAP 72 106 1.29e-8 SMART
coiled coil region 138 175 N/A INTRINSIC
low complexity region 205 220 N/A INTRINSIC
coiled coil region 259 300 N/A INTRINSIC
low complexity region 378 396 N/A INTRINSIC
low complexity region 414 423 N/A INTRINSIC
low complexity region 573 603 N/A INTRINSIC
low complexity region 631 662 N/A INTRINSIC
low complexity region 734 743 N/A INTRINSIC
low complexity region 760 773 N/A INTRINSIC
low complexity region 778 792 N/A INTRINSIC
low complexity region 803 813 N/A INTRINSIC
internal_repeat_1 817 892 1.63e-6 PROSPERO
low complexity region 927 952 N/A INTRINSIC
RRM 1012 1081 8.3e-2 SMART
Pfam:RSB_motif 1139 1246 5.7e-30 PFAM
low complexity region 1275 1329 N/A INTRINSIC
Predicted Effect unknown
Transcript: ENSMUST00000022794
AA Change: V573A
SMART Domains Protein: ENSMUSP00000022794
Gene: ENSMUSG00000022185
AA Change: V573A

DomainStartEndE-ValueType
low complexity region 21 35 N/A INTRINSIC
low complexity region 46 56 N/A INTRINSIC
low complexity region 169 194 N/A INTRINSIC
RRM 254 323 8.3e-2 SMART
low complexity region 355 405 N/A INTRINSIC
low complexity region 412 450 N/A INTRINSIC
PDB:4A8X|B 451 475 4e-6 PDB
low complexity region 477 512 N/A INTRINSIC
low complexity region 517 571 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000067784
SMART Domains Protein: ENSMUSP00000066005
Gene: ENSMUSG00000059674

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
CA 67 148 7.85e-18 SMART
CA 172 257 3.23e-28 SMART
CA 281 369 4.24e-14 SMART
CA 396 477 1.48e-22 SMART
Blast:CA 500 581 3e-31 BLAST
transmembrane domain 602 624 N/A INTRINSIC
Pfam:Cadherin_C 627 775 2e-48 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000111484
AA Change: V1291A
SMART Domains Protein: ENSMUSP00000107109
Gene: ENSMUSG00000022185
AA Change: V1291A

DomainStartEndE-ValueType
SAP 72 106 1.29e-8 SMART
coiled coil region 138 172 N/A INTRINSIC
coiled coil region 219 260 N/A INTRINSIC
low complexity region 338 356 N/A INTRINSIC
low complexity region 374 383 N/A INTRINSIC
low complexity region 533 563 N/A INTRINSIC
low complexity region 591 622 N/A INTRINSIC
low complexity region 694 703 N/A INTRINSIC
low complexity region 720 733 N/A INTRINSIC
low complexity region 738 752 N/A INTRINSIC
low complexity region 763 773 N/A INTRINSIC
internal_repeat_1 777 852 1.21e-6 PROSPERO
low complexity region 887 912 N/A INTRINSIC
RRM 972 1041 8.3e-2 SMART
low complexity region 1073 1123 N/A INTRINSIC
low complexity region 1130 1168 N/A INTRINSIC
coiled coil region 1188 1253 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000123875
SMART Domains Protein: ENSMUSP00000117210
Gene: ENSMUSG00000022185

DomainStartEndE-ValueType
low complexity region 19 35 N/A INTRINSIC
low complexity region 87 101 N/A INTRINSIC
low complexity region 112 122 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000124271
Predicted Effect noncoding transcript
Transcript: ENSMUST00000125767
Predicted Effect possibly damaging
Transcript: ENSMUST00000167015
AA Change: V574A

PolyPhen 2 Score 0.801 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000125776
Gene: ENSMUSG00000022185
AA Change: V574A

DomainStartEndE-ValueType
low complexity region 21 35 N/A INTRINSIC
low complexity region 46 56 N/A INTRINSIC
low complexity region 170 195 N/A INTRINSIC
RRM 255 324 8.3e-2 SMART
low complexity region 356 406 N/A INTRINSIC
low complexity region 413 451 N/A INTRINSIC
PDB:4A8X|B 452 476 4e-6 PDB
low complexity region 478 513 N/A INTRINSIC
low complexity region 518 572 N/A INTRINSIC
Predicted Effect unknown
Transcript: ENSMUST00000141453
AA Change: V545A
SMART Domains Protein: ENSMUSP00000116664
Gene: ENSMUSG00000022185
AA Change: V545A

DomainStartEndE-ValueType
low complexity region 5 19 N/A INTRINSIC
low complexity region 30 40 N/A INTRINSIC
low complexity region 141 166 N/A INTRINSIC
RRM 226 295 8.3e-2 SMART
low complexity region 327 377 N/A INTRINSIC
low complexity region 384 422 N/A INTRINSIC
PDB:4A8X|B 423 447 4e-6 PDB
low complexity region 449 484 N/A INTRINSIC
low complexity region 489 543 N/A INTRINSIC
Predicted Effect unknown
Transcript: ENSMUST00000150371
AA Change: V627A
SMART Domains Protein: ENSMUSP00000118069
Gene: ENSMUSG00000022185
AA Change: V627A

DomainStartEndE-ValueType
low complexity region 19 35 N/A INTRINSIC
low complexity region 74 88 N/A INTRINSIC
low complexity region 99 109 N/A INTRINSIC
low complexity region 223 248 N/A INTRINSIC
RRM 308 377 8.3e-2 SMART
low complexity region 409 459 N/A INTRINSIC
low complexity region 466 504 N/A INTRINSIC
PDB:4A8X|B 505 529 3e-6 PDB
low complexity region 531 566 N/A INTRINSIC
low complexity region 571 625 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000148754
AA Change: V574A

PolyPhen 2 Score 0.801 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000122003
Gene: ENSMUSG00000022185
AA Change: V574A

DomainStartEndE-ValueType
low complexity region 21 35 N/A INTRINSIC
low complexity region 46 56 N/A INTRINSIC
low complexity region 170 195 N/A INTRINSIC
RRM 255 324 8.3e-2 SMART
low complexity region 356 406 N/A INTRINSIC
low complexity region 413 451 N/A INTRINSIC
PDB:4A8X|B 452 476 4e-6 PDB
low complexity region 478 513 N/A INTRINSIC
low complexity region 518 572 N/A INTRINSIC
Predicted Effect unknown
Transcript: ENSMUST00000126166
AA Change: V558A
SMART Domains Protein: ENSMUSP00000114546
Gene: ENSMUSG00000022185
AA Change: V558A

DomainStartEndE-ValueType
low complexity region 5 19 N/A INTRINSIC
low complexity region 30 40 N/A INTRINSIC
low complexity region 154 179 N/A INTRINSIC
RRM 239 308 8.3e-2 SMART
low complexity region 340 390 N/A INTRINSIC
low complexity region 397 435 N/A INTRINSIC
PDB:4A8X|B 436 460 4e-6 PDB
low complexity region 462 497 N/A INTRINSIC
low complexity region 502 556 N/A INTRINSIC
Predicted Effect unknown
Transcript: ENSMUST00000147714
AA Change: V1264A
SMART Domains Protein: ENSMUSP00000119080
Gene: ENSMUSG00000022185
AA Change: V1264A

DomainStartEndE-ValueType
SAP 18 52 1.29e-8 SMART
coiled coil region 83 120 N/A INTRINSIC
low complexity region 151 166 N/A INTRINSIC
coiled coil region 204 245 N/A INTRINSIC
low complexity region 324 342 N/A INTRINSIC
low complexity region 360 369 N/A INTRINSIC
low complexity region 519 549 N/A INTRINSIC
low complexity region 577 608 N/A INTRINSIC
low complexity region 680 689 N/A INTRINSIC
low complexity region 706 719 N/A INTRINSIC
low complexity region 724 738 N/A INTRINSIC
low complexity region 749 759 N/A INTRINSIC
low complexity region 861 886 N/A INTRINSIC
RRM 946 1015 8.3e-2 SMART
Pfam:RSB_motif 1065 1180 1.1e-29 PFAM
low complexity region 1209 1263 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000152773
Predicted Effect noncoding transcript
Transcript: ENSMUST00000151487
Predicted Effect noncoding transcript
Transcript: ENSMUST00000167495
Predicted Effect noncoding transcript
Transcript: ENSMUST00000133706
Predicted Effect noncoding transcript
Transcript: ENSMUST00000196776
Predicted Effect noncoding transcript
Transcript: ENSMUST00000170299
Predicted Effect probably benign
Transcript: ENSMUST00000169818
SMART Domains Protein: ENSMUSP00000131860
Gene: ENSMUSG00000091306

DomainStartEndE-ValueType
low complexity region 1 61 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000138321
SMART Domains Protein: ENSMUSP00000119326
Gene: ENSMUSG00000022185

DomainStartEndE-ValueType
Pfam:RSB_motif 20 128 4.7e-23 PFAM
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Apoptosis is defined by several morphologic nuclear changes, including chromatin condensation and nuclear fragmentation. This gene encodes a nuclear protein that induces apoptotic chromatin condensation after activation by caspase-3, without inducing DNA fragmentation. This protein has also been shown to be a component of a splicing-dependent multiprotein exon junction complex (EJC) that is deposited at splice junctions on mRNAs, as a consequence of pre-mRNA splicing. It may thus be involved in mRNA metabolism associated with splicing. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Oct 2011]
Allele List at MGI
Other mutations in this stock
Total: 60 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca13 A G 11: 9,328,291 (GRCm39) T3455A probably damaging Het
Abca8a G A 11: 109,941,762 (GRCm39) P1169L probably damaging Het
Ablim3 T A 18: 61,959,574 (GRCm39) K272* probably null Het
Abtb3 A G 10: 85,469,646 (GRCm39) T856A probably benign Het
Acot4 A T 12: 84,090,235 (GRCm39) I311L probably benign Het
Akap9 C T 5: 4,026,164 (GRCm39) A1273V probably benign Het
Ap1g2 T A 14: 55,342,479 (GRCm39) probably benign Het
Apob A T 12: 8,065,366 (GRCm39) K4112* probably null Het
Aspdh A G 7: 44,114,963 (GRCm39) probably null Het
Atf7ip T C 6: 136,583,725 (GRCm39) I1252T probably damaging Het
Avpr1a A G 10: 122,285,367 (GRCm39) T220A possibly damaging Het
Bdp1 A G 13: 100,178,778 (GRCm39) F1856S possibly damaging Het
Cit A T 5: 116,083,896 (GRCm39) N743I probably benign Het
Clvs2 T C 10: 33,471,784 (GRCm39) K174E probably damaging Het
Cyp4f40 A T 17: 32,893,222 (GRCm39) Q351L probably damaging Het
Dmbt1 G T 7: 130,672,919 (GRCm39) V550L possibly damaging Het
Edem1 T G 6: 108,813,738 (GRCm39) S178A probably damaging Het
Fam222b C T 11: 78,044,934 (GRCm39) A165V probably benign Het
Fer T C 17: 64,203,262 (GRCm39) V64A possibly damaging Het
Fggy T G 4: 95,814,986 (GRCm39) F535C possibly damaging Het
Fkbp15 A T 4: 62,222,627 (GRCm39) S1091T probably damaging Het
Fstl5 G A 3: 76,229,498 (GRCm39) V100M probably damaging Het
Fut7 G T 2: 25,315,155 (GRCm39) V91L probably damaging Het
Gemin4 A T 11: 76,103,067 (GRCm39) C565S probably damaging Het
Gzmm C T 10: 79,530,897 (GRCm39) T233I possibly damaging Het
Hps5 A T 7: 46,418,804 (GRCm39) L789Q possibly damaging Het
Krt32 G A 11: 99,974,876 (GRCm39) S357F possibly damaging Het
Lrig2 C T 3: 104,401,512 (GRCm39) probably benign Het
Lrp8 C A 4: 107,718,431 (GRCm39) Q678K probably benign Het
Mmp27 C A 9: 7,571,591 (GRCm39) Q45K probably benign Het
Myh1 A G 11: 67,099,896 (GRCm39) D602G possibly damaging Het
Ncoa1 G T 12: 4,345,294 (GRCm39) H684Q probably damaging Het
Nol9 T C 4: 152,125,559 (GRCm39) V170A possibly damaging Het
Notch2 A G 3: 98,053,460 (GRCm39) D2041G probably damaging Het
Nrg3 G T 14: 38,390,256 (GRCm39) probably benign Het
Nuak1 T A 10: 84,276,085 (GRCm39) H46L probably damaging Het
Pdzd2 G T 15: 12,374,427 (GRCm39) Q1903K probably benign Het
Pik3c2g T C 6: 139,913,554 (GRCm39) V616A probably damaging Het
Ppp6c A G 2: 39,116,229 (GRCm39) Y9H probably damaging Het
Prdm11 A T 2: 92,843,234 (GRCm39) F75Y probably damaging Het
Prelid1 G A 13: 55,472,219 (GRCm39) V132I probably benign Het
Prom1 A G 5: 44,201,740 (GRCm39) S227P probably damaging Het
Psmb5 G A 14: 54,854,083 (GRCm39) R132C probably benign Het
Pus10 A G 11: 23,668,602 (GRCm39) N360D probably damaging Het
Pygm G A 19: 6,443,868 (GRCm39) V610M probably damaging Het
Setd1a A G 7: 127,384,349 (GRCm39) probably benign Het
Sfmbt1 T A 14: 30,538,759 (GRCm39) W793R probably damaging Het
Slc25a4 A G 8: 46,662,187 (GRCm39) L157P probably damaging Het
Sost T G 11: 101,855,084 (GRCm39) E75A possibly damaging Het
Tdrd9 A G 12: 111,958,922 (GRCm39) S119G possibly damaging Het
Tepsin A G 11: 119,984,954 (GRCm39) I238T probably benign Het
Tfr2 T A 5: 137,581,081 (GRCm39) L507* probably null Het
Tmem106a T C 11: 101,477,121 (GRCm39) I110T possibly damaging Het
Tmem38a A T 8: 73,339,926 (GRCm39) D298V possibly damaging Het
Tmprss12 A T 15: 100,183,262 (GRCm39) R201S probably benign Het
Ugt2b36 T C 5: 87,238,759 (GRCm39) T271A possibly damaging Het
Virma T G 4: 11,514,096 (GRCm39) V650G probably benign Het
Vmn1r220 A T 13: 23,368,162 (GRCm39) I178N probably damaging Het
Zfp609 A G 9: 65,604,901 (GRCm39) S1276P possibly damaging Het
Zfp809 A G 9: 22,146,398 (GRCm39) Y29C probably damaging Het
Other mutations in Acin1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00988:Acin1 APN 14 54,884,257 (GRCm39) missense probably damaging 1.00
IGL01530:Acin1 APN 14 54,881,443 (GRCm39) missense probably damaging 1.00
IGL02396:Acin1 APN 14 54,882,256 (GRCm39) intron probably benign
Protuberant UTSW 14 54,882,740 (GRCm39) missense probably damaging 1.00
R0411:Acin1 UTSW 14 54,884,231 (GRCm39) missense probably damaging 1.00
R0723:Acin1 UTSW 14 54,902,908 (GRCm39) missense probably damaging 0.98
R0755:Acin1 UTSW 14 54,889,292 (GRCm39) start codon destroyed probably null 0.93
R0784:Acin1 UTSW 14 54,890,985 (GRCm39) unclassified probably benign
R1600:Acin1 UTSW 14 54,881,174 (GRCm39) intron probably benign
R1682:Acin1 UTSW 14 54,901,175 (GRCm39) missense probably damaging 1.00
R1721:Acin1 UTSW 14 54,901,995 (GRCm39) missense probably benign 0.01
R1756:Acin1 UTSW 14 54,902,661 (GRCm39) missense probably benign 0.30
R1867:Acin1 UTSW 14 54,881,718 (GRCm39) missense probably damaging 1.00
R1997:Acin1 UTSW 14 54,884,156 (GRCm39) splice site probably null
R2067:Acin1 UTSW 14 54,902,711 (GRCm39) missense probably damaging 1.00
R3947:Acin1 UTSW 14 54,916,790 (GRCm39) missense possibly damaging 0.89
R4374:Acin1 UTSW 14 54,891,351 (GRCm39) unclassified probably benign
R4476:Acin1 UTSW 14 54,882,787 (GRCm39) missense probably damaging 1.00
R4501:Acin1 UTSW 14 54,924,044 (GRCm39) missense probably damaging 1.00
R4547:Acin1 UTSW 14 54,883,124 (GRCm39) missense probably benign 0.01
R4621:Acin1 UTSW 14 54,890,900 (GRCm39) unclassified probably benign
R4657:Acin1 UTSW 14 54,880,504 (GRCm39) missense possibly damaging 0.93
R4680:Acin1 UTSW 14 54,924,215 (GRCm39) missense probably benign 0.00
R4696:Acin1 UTSW 14 54,880,474 (GRCm39) intron probably benign
R4806:Acin1 UTSW 14 54,916,685 (GRCm39) splice site probably benign
R4826:Acin1 UTSW 14 54,902,074 (GRCm39) missense probably damaging 0.97
R5096:Acin1 UTSW 14 54,916,679 (GRCm39) intron probably benign
R5153:Acin1 UTSW 14 54,883,070 (GRCm39) missense probably benign 0.25
R5223:Acin1 UTSW 14 54,880,398 (GRCm39) frame shift probably null
R5260:Acin1 UTSW 14 54,880,279 (GRCm39) intron probably benign
R5525:Acin1 UTSW 14 54,901,848 (GRCm39) missense possibly damaging 0.94
R5575:Acin1 UTSW 14 54,916,195 (GRCm39) splice site probably null
R5902:Acin1 UTSW 14 54,901,130 (GRCm39) missense probably benign 0.01
R6211:Acin1 UTSW 14 54,881,503 (GRCm39) missense probably damaging 1.00
R6524:Acin1 UTSW 14 54,882,740 (GRCm39) missense probably damaging 1.00
R6560:Acin1 UTSW 14 54,916,290 (GRCm39) missense probably benign 0.24
R6916:Acin1 UTSW 14 54,902,873 (GRCm39) missense probably benign 0.27
R7201:Acin1 UTSW 14 54,902,356 (GRCm39) missense possibly damaging 0.83
R7833:Acin1 UTSW 14 54,902,059 (GRCm39) missense possibly damaging 0.83
R8096:Acin1 UTSW 14 54,882,726 (GRCm39) missense possibly damaging 0.80
R8167:Acin1 UTSW 14 54,902,337 (GRCm39) missense probably benign 0.01
R8421:Acin1 UTSW 14 54,880,486 (GRCm39) missense unknown
R8771:Acin1 UTSW 14 54,880,496 (GRCm39) missense unknown
R8862:Acin1 UTSW 14 54,901,172 (GRCm39) missense probably benign 0.00
R9645:Acin1 UTSW 14 54,901,913 (GRCm39) missense probably benign 0.16
R9755:Acin1 UTSW 14 54,889,292 (GRCm39) missense probably damaging 0.99
X0021:Acin1 UTSW 14 54,904,558 (GRCm39) missense probably damaging 1.00
Z1177:Acin1 UTSW 14 54,880,207 (GRCm39) missense unknown
Posted On 2015-12-18