Mutagenetix > Incidental Mutation

Incidental Mutation 'R4766:Clca3a1'

366126

Institutional Source

Beutler Lab

Gene Symbol

Clca3a1

Ensembl Gene

ENSMUSG00000056025

Gene Name

chloride channel accessory 3A1

Synonyms

Clca1

MMRRC Submission

042407-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.062) question?

Stock #

R4766 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

144729677-144760977 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 144749712 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Glutamine at position 440 (L440Q)

Ref Sequence

ENSEMBL: ENSMUSP00000054526 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029932] [ENSMUST00000059091]

AlphaFold

Q9QX15

Predicted Effect

probably damaging
Transcript: ENSMUST00000029932
AA Change: L440Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000029932
Gene: ENSMUSG00000056025
AA Change: L440Q

Domain	Start	End	E-Value	Type
Pfam:CLCA_N	1	262	5.8e-144	PFAM
VWA	306	473	1.81e-20	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000059091
AA Change: L440Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000054526
Gene: ENSMUSG00000056025
AA Change: L440Q

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
VWA	306	478	1.44e-23	SMART
Blast:FN3	758	857	2e-44	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000196146

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.1%
20x: 94.9%

Validation Efficiency

97% (87/90)

Allele List at MGI

Other mutations in this stock

Total: 80 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900026A02Rik	C	T	5: 113,097,636	V1584I	probably benign	Het
A430105I19Rik	C	A	2: 118,759,577	R262L	probably damaging	Het
Adamts12	A	G	15: 11,285,901	D732G	probably benign	Het
Agpat4	A	G	17: 12,151,750		probably benign	Het
AI182371	T	C	2: 35,095,817	D140G	possibly damaging	Het
Apol11b	T	A	15: 77,634,933	T316S	probably benign	Het
Arsi	G	A	18: 60,916,651	G202E	probably benign	Het
Bard1	T	C	1: 71,075,174	E216G	probably benign	Het
Bdp1	C	A	13: 100,049,868	R1692L	probably damaging	Het
Capn10	T	C	1: 92,943,419	I101T	probably damaging	Het
Ccdc175	C	T	12: 72,112,205	M653I	probably benign	Het
Ccr8	G	A	9: 120,094,464	C215Y	probably damaging	Het
Cct3	T	A	3: 88,311,785	L241*	probably null	Het
Cd2ap	A	T	17: 42,852,459	I25N	probably damaging	Het
Cdh19	T	C	1: 110,893,260	K583E	probably benign	Het
Cela3a	A	G	4: 137,402,675	S212P	unknown	Het
Cfap44	T	A	16: 44,415,883		probably null	Het
Crybg2	A	G	4: 134,089,352	Y1676C	probably damaging	Het
Dscam	T	C	16: 96,643,988	D1501G	probably benign	Het
Eml6	C	A	11: 29,805,757	L832F	probably benign	Het
Enpp3	A	G	10: 24,773,927	L867P	probably damaging	Het
Erbb3	A	G	10: 128,586,238	Y46H	possibly damaging	Het
Fads3	T	C	19: 10,056,020	I342T	possibly damaging	Het
Flvcr1	A	T	1: 191,021,106	S290T	probably benign	Het
Fut9	A	G	4: 25,799,191		probably benign	Het
Gad2	C	T	2: 22,622,667	A2V	probably damaging	Het
Gkn3	C	T	6: 87,383,525	A163T	probably damaging	Het
Gm10715	T	G	9: 3,038,073		probably benign	Het
Herc1	T	G	9: 66,441,929	D2023E	probably benign	Het
Hsd3b3	A	G	3: 98,742,485	L174P	probably damaging	Het
Impg2	TACCACCACCACCACCACCACCACCA	TACCACCACCACCACCACCACCA	16: 56,257,939		probably benign	Het
Iqcf3	A	G	9: 106,560,949		probably null	Het
Kcna4	G	A	2: 107,296,543	V541M	probably damaging	Het
Kcnj11	T	C	7: 46,099,816	T28A	probably benign	Het
Kcnmb2	T	A	3: 32,181,867	N88K	probably damaging	Het
Kdm2a	TTCCTCCTCCTCCTCCTCTTCCTCCTCCTC	TTCCTCCTCCTCCTCTTCCTCCTCCTC	19: 4,324,507		probably benign	Het
Krt2	T	C	15: 101,813,960	E430G	probably damaging	Het
Lins1	C	T	7: 66,710,641	L384F	possibly damaging	Het
Man1c1	G	C	4: 134,703,438	P11R	probably damaging	Het
Mfge8	T	C	7: 79,134,525	N389D	probably damaging	Het
Mug1	C	T	6: 121,884,254	T1278I	probably benign	Het
Myh9	T	C	15: 77,807,877	M161V	probably damaging	Het
Myl7	T	A	11: 5,898,171	Y61F	probably benign	Het
Nlrp4d	A	T	7: 10,362,779		unknown	Het
Nol3	A	G	8: 105,281,933		probably null	Het
Nup85	T	A	11: 115,577,925		probably null	Het
Obscn	T	A	11: 59,012,742	T7619S	probably damaging	Het
Olfr1298	T	C	2: 111,645,881	M39V	probably benign	Het
Olfr331	T	A	11: 58,501,668	N296I	probably damaging	Het
Olfr628	C	T	7: 103,732,250	T108I	possibly damaging	Het
Olfr844	G	A	9: 19,318,845	V104I	probably benign	Het
Pax5	T	A	4: 44,679,494	I184F	probably damaging	Het
Pcdha7	T	A	18: 36,974,507	V195D	probably damaging	Het
Phf3	A	T	1: 30,813,939		probably benign	Het
Pla2g15	G	T	8: 106,163,071	G325V	probably damaging	Het
Ppp1r21	T	C	17: 88,572,615	F487L	probably benign	Het
Ppp1r9a	A	G	6: 5,157,016	I965V	probably benign	Het
Ptpru	A	G	4: 131,820,964	V74A	probably damaging	Het
Rif1	T	A	2: 52,098,934	Y780N	probably damaging	Het
Rps25	T	A	9: 44,408,749	Y23N	possibly damaging	Het
Ryr1	T	C	7: 29,085,833	D1811G	probably damaging	Het
Scamp5	T	G	9: 57,452,036		probably null	Het
Senp1	T	C	15: 98,045,896	D602G	probably damaging	Het
Sh2b2	T	G	5: 136,231,957	D135A	probably damaging	Het
Slc26a8	G	A	17: 28,638,661	T836M	probably benign	Het
Slfn4	T	G	11: 83,186,821	I145S	possibly damaging	Het
Spag6l	G	A	16: 16,777,390	T377I	probably benign	Het
Spdye4b	T	C	5: 143,196,334	F129S	probably damaging	Het
Sspo	G	A	6: 48,470,580	G2360E	probably benign	Het
Taar2	A	T	10: 23,940,771	I70F	probably damaging	Het
Taar7e	A	G	10: 24,038,566	N318S	probably damaging	Het
Tor1a	C	A	2: 30,967,730	R42L	probably benign	Het
Trdn	A	T	10: 33,474,506	Q690H	probably benign	Het
Trim56	C	A	5: 137,112,725	V646L	probably benign	Het
Tspan15	T	A	10: 62,191,544	K165I	probably benign	Het
Usp24	A	G	4: 106,416,048	Y2210C	probably damaging	Het
Usp45	A	G	4: 21,797,307	T76A	probably damaging	Het
Vps13c	T	A	9: 67,878,224		probably null	Het
Zfp512b	T	C	2: 181,585,095		probably benign	Het
Zyx	C	A	6: 42,356,159		probably null	Het

Other mutations in Clca3a1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00768:Clca3a1	APN	3	144,755,251 (GRCm38)	missense	probably damaging	0.96
IGL01331:Clca3a1	APN	3	144,747,512 (GRCm38)	missense	probably damaging	1.00
IGL01895:Clca3a1	APN	3	144,747,572 (GRCm38)	nonsense	probably null
IGL01940:Clca3a1	APN	3	144,746,976 (GRCm38)	missense	probably benign	0.25
IGL02162:Clca3a1	APN	3	144,754,803 (GRCm38)	missense	probably damaging	0.98
IGL02200:Clca3a1	APN	3	144,751,929 (GRCm38)	splice site	probably benign
IGL03093:Clca3a1	APN	3	144,747,501 (GRCm38)	missense	probably damaging	0.99
Lucha	UTSW	3	144,749,689 (GRCm38)	missense	probably damaging	1.00
R0256:Clca3a1	UTSW	3	144,730,879 (GRCm38)	missense	probably damaging	0.98
R0513:Clca3a1	UTSW	3	144,760,562 (GRCm38)	critical splice donor site	probably null
R0543:Clca3a1	UTSW	3	144,748,394 (GRCm38)	splice site	probably benign
R1522:Clca3a1	UTSW	3	144,755,171 (GRCm38)	missense	probably benign	0.01
R1744:Clca3a1	UTSW	3	144,746,835 (GRCm38)	missense	probably damaging	0.99
R1873:Clca3a1	UTSW	3	144,746,829 (GRCm38)	missense	probably damaging	0.99
R2238:Clca3a1	UTSW	3	144,752,005 (GRCm38)	missense	possibly damaging	0.94
R2278:Clca3a1	UTSW	3	144,758,024 (GRCm38)	missense	probably damaging	0.99
R2516:Clca3a1	UTSW	3	144,737,858 (GRCm38)	splice site	probably null
R3737:Clca3a1	UTSW	3	144,730,721 (GRCm38)	missense	probably benign	0.01
R3981:Clca3a1	UTSW	3	144,755,309 (GRCm38)	missense	probably benign	0.00
R3982:Clca3a1	UTSW	3	144,755,309 (GRCm38)	missense	probably benign	0.00
R3983:Clca3a1	UTSW	3	144,755,309 (GRCm38)	missense	probably benign	0.00
R4038:Clca3a1	UTSW	3	144,755,233 (GRCm38)	missense	probably benign	0.35
R4382:Clca3a1	UTSW	3	144,760,722 (GRCm38)	start codon destroyed	probably benign	0.08
R4543:Clca3a1	UTSW	3	144,746,988 (GRCm38)	missense	probably damaging	1.00
R4899:Clca3a1	UTSW	3	144,737,961 (GRCm38)	missense	probably damaging	1.00
R5090:Clca3a1	UTSW	3	144,737,872 (GRCm38)	missense	probably benign	0.01
R5091:Clca3a1	UTSW	3	144,730,722 (GRCm38)	missense	probably benign	0.00
R5205:Clca3a1	UTSW	3	144,746,784 (GRCm38)	missense	possibly damaging	0.68
R5248:Clca3a1	UTSW	3	144,737,136 (GRCm38)	missense	possibly damaging	0.62
R5354:Clca3a1	UTSW	3	144,737,005 (GRCm38)	missense	possibly damaging	0.77
R5871:Clca3a1	UTSW	3	144,754,881 (GRCm38)	missense	probably damaging	1.00
R5907:Clca3a1	UTSW	3	144,749,642 (GRCm38)	intron	probably benign
R5976:Clca3a1	UTSW	3	144,746,875 (GRCm38)	missense	probably damaging	1.00
R6190:Clca3a1	UTSW	3	144,758,060 (GRCm38)	missense	probably benign	0.40
R6193:Clca3a1	UTSW	3	144,759,232 (GRCm38)	missense	possibly damaging	0.65
R6263:Clca3a1	UTSW	3	144,749,778 (GRCm38)	missense	probably damaging	1.00
R6299:Clca3a1	UTSW	3	144,758,514 (GRCm38)	missense	probably damaging	0.99
R6327:Clca3a1	UTSW	3	144,730,797 (GRCm38)	missense	probably benign	0.02
R6497:Clca3a1	UTSW	3	144,759,259 (GRCm38)	missense	possibly damaging	0.81
R6542:Clca3a1	UTSW	3	144,759,260 (GRCm38)	missense	probably benign	0.01
R6547:Clca3a1	UTSW	3	144,736,947 (GRCm38)	missense	probably damaging	1.00
R6759:Clca3a1	UTSW	3	144,749,689 (GRCm38)	missense	probably damaging	1.00
R7032:Clca3a1	UTSW	3	144,747,568 (GRCm38)	missense	probably benign	0.07
R7063:Clca3a1	UTSW	3	144,755,206 (GRCm38)	missense	probably damaging	0.97
R7139:Clca3a1	UTSW	3	144,755,302 (GRCm38)	missense	possibly damaging	0.58
R7638:Clca3a1	UTSW	3	144,751,962 (GRCm38)	missense	probably damaging	1.00
R7663:Clca3a1	UTSW	3	144,737,036 (GRCm38)	missense	probably benign	0.02
R7792:Clca3a1	UTSW	3	144,749,731 (GRCm38)	missense	possibly damaging	0.95
R7798:Clca3a1	UTSW	3	144,757,962 (GRCm38)	missense	probably damaging	1.00
R7892:Clca3a1	UTSW	3	144,730,818 (GRCm38)	missense	probably benign	0.00
R8096:Clca3a1	UTSW	3	144,749,685 (GRCm38)	missense	probably damaging	1.00
R8305:Clca3a1	UTSW	3	144,759,166 (GRCm38)	splice site	probably benign
R8416:Clca3a1	UTSW	3	144,755,153 (GRCm38)	critical splice donor site	probably null
R8446:Clca3a1	UTSW	3	144,748,487 (GRCm38)	missense	probably damaging	0.97
R8496:Clca3a1	UTSW	3	144,747,421 (GRCm38)	makesense	probably null
R9014:Clca3a1	UTSW	3	144,736,970 (GRCm38)	missense	probably benign	0.01
R9128:Clca3a1	UTSW	3	144,758,034 (GRCm38)	missense	probably damaging	1.00
R9601:Clca3a1	UTSW	3	144,747,549 (GRCm38)	missense	probably benign	0.27
Z1088:Clca3a1	UTSW	3	144,746,953 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CAGAGCGTCTGTTTAGTGCAATG -3'
(R):5'- GCAGTGACAGCATGTAATTAGC -3'

Sequencing Primer
(F):5'- CAGCAGGCACCGAATAATTTAAG -3'
(R):5'- GTGACAGCATGTAATTAGCACCCTG -3'

Posted On

2015-12-21