Mutagenetix > Incidental Mutations

Incidental Mutation 'R4781:Trmt10b'

366476

Institutional Source

Beutler Lab

Gene Symbol

Trmt10b

Ensembl Gene

ENSMUSG00000035601

Gene Name

tRNA methyltransferase 10B

Synonyms

MMRRC Submission

042415-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.239) question?

Stock #

R4781 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

45297127-45316131 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 45305817 bp

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 164 (I164N)

Ref Sequence

ENSEMBL: ENSMUSP00000103429 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000044673] [ENSMUST00000107800] [ENSMUST00000144781]

Predicted Effect

probably damaging
Transcript: ENSMUST00000044673
AA Change: I166N

PolyPhen 2 Score 0.970 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000041052
Gene: ENSMUSG00000035601
AA Change: I166N

Domain	Start	End	E-Value	Type
low complexity region	76	95	N/A	INTRINSIC
low complexity region	110	122	N/A	INTRINSIC
Pfam:tRNA_m1G_MT	135	308	2.6e-46	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000107800
AA Change: I164N

PolyPhen 2 Score 0.984 (Sensitivity: 0.74; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000103429
Gene: ENSMUSG00000035601
AA Change: I164N

Domain	Start	End	E-Value	Type
low complexity region	76	95	N/A	INTRINSIC
low complexity region	108	120	N/A	INTRINSIC
Pfam:tRNA_m1G_MT	133	306	1.6e-46	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126972

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141659

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142785

Predicted Effect

probably benign
Transcript: ENSMUST00000144781

SMART Domains

Protein: ENSMUSP00000114832
Gene: ENSMUSG00000035601

Domain	Start	End	E-Value	Type
low complexity region	76	95	N/A	INTRINSIC
low complexity region	110	122	N/A	INTRINSIC

Meta Mutation Damage Score

0.7839

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 95.0%

Validation Efficiency

100% (74/74)

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310022A10Rik	T	A	7: 27,571,651	I157N	probably damaging	Het
Adgrl3	T	C	5: 81,760,724	Y1165H	probably damaging	Het
Adra2a	A	G	19: 54,046,495	D94G	probably damaging	Het
Akr1c20	T	A	13: 4,508,175	K197*	probably null	Het
Ankrd65	C	T	4: 155,793,036	H335Y	possibly damaging	Het
Axin2	T	A	11: 108,943,856	L636Q	probably damaging	Het
BC147527	A	C	13: 120,308,162	K6T	possibly damaging	Het
Camk1g	G	T	1: 193,356,344	T90N	probably benign	Het
Cd177	C	A	7: 24,750,626	C528F	probably damaging	Het
Cntnap5a	A	T	1: 116,412,201	D730V	possibly damaging	Het
Crtap	T	C	9: 114,386,236	D195G	probably benign	Het
Csn1s2b	A	G	5: 87,819,093	S74G	possibly damaging	Het
Cyp3a16	T	C	5: 145,456,112	R128G	possibly damaging	Het
Dnah7a	A	G	1: 53,425,208	F3675L	probably benign	Het
Dram2	T	A	3: 106,571,676	W195R	probably damaging	Het
E130308A19Rik	C	T	4: 59,691,057	P297L	probably benign	Het
Eif3i	T	C	4: 129,595,273	S83G	probably benign	Het
Gabra1	G	A	11: 42,133,661	P396S	probably damaging	Het
Gipr	T	A	7: 19,157,375	Y459F	possibly damaging	Het
Gm11677	C	T	11: 111,724,711		noncoding transcript	Het
Gm6981	T	C	9: 52,002,756		noncoding transcript	Het
Grin2d	T	C	7: 45,862,481	D180G	probably damaging	Het
Hectd4	T	G	5: 121,306,107		probably null	Het
Hhat	T	C	1: 192,686,979		probably benign	Het
Hoxa6	A	G	6: 52,206,420	L215P	possibly damaging	Het
Hsf4	G	A	8: 105,274,752		probably null	Het
Igf1r	G	A	7: 68,165,199	A283T	possibly damaging	Het
Ighv15-2	A	G	12: 114,564,856	S25P	probably damaging	Het
Inpp5a	C	T	7: 139,478,005	T43I	probably benign	Het
Kmt2c	T	A	5: 25,443,825	E82V	probably damaging	Het
Lrrc31	A	G	3: 30,687,377		probably benign	Het
Mdga2	A	G	12: 66,797,622		probably null	Het
Mefv	G	A	16: 3,715,334	P358S	probably benign	Het
Mrgpra9	A	G	7: 47,235,047	F291L	possibly damaging	Het
Mtmr3	A	G	11: 4,488,435	L673P	probably benign	Het
Muc19	T	C	15: 91,903,166		noncoding transcript	Het
Myo5b	A	T	18: 74,744,681	T1584S	possibly damaging	Het
Olfr1375	A	T	11: 51,048,480	R124S	probably damaging	Het
Olfr1427	T	C	19: 12,099,367	T91A	probably benign	Het
Palld	G	T	8: 61,877,028	R272S	probably benign	Het
Pcnx3	T	A	19: 5,687,130	N144Y	probably damaging	Het
Prf1	A	G	10: 61,300,424	K160E	probably damaging	Het
Rasgrp1	G	A	2: 117,291,709	A400V	probably benign	Het
Rnf150	A	G	8: 82,864,152	Y48C	probably damaging	Het
Rpl11	G	T	4: 136,050,288	Q170K	probably benign	Het
Scin	G	A	12: 40,081,764	A257V	possibly damaging	Het
Scn7a	C	A	2: 66,703,760	A524S	possibly damaging	Het
Sim1	T	C	10: 50,983,785	L581S	probably benign	Het
Skor1	T	C	9: 63,144,459	T715A	probably benign	Het
Slc22a26	A	G	19: 7,790,135	V301A	probably benign	Het
Sorcs1	T	C	19: 50,182,681	Y923C	probably damaging	Het
Src	T	A	2: 157,467,485	M304K	possibly damaging	Het
Srgap3	A	T	6: 112,757,425		probably benign	Het
Stard3	G	A	11: 98,372,334	E72K	possibly damaging	Het
Svep1	T	A	4: 58,070,340	N2482I	probably damaging	Het
Tbc1d23	T	C	16: 57,218,415	K20R	possibly damaging	Het
Tfip11	G	A	5: 112,333,399	E414K	probably damaging	Het
Tinag	G	T	9: 76,996,950	T397K	possibly damaging	Het
Traf7	C	G	17: 24,510,438		probably benign	Het
Trpm1	A	G	7: 64,235,052	D827G	probably benign	Het
Ube2u	A	T	4: 100,486,658	T85S	probably benign	Het
Ulk4	T	C	9: 121,103,576	D1066G	probably benign	Het
Vmn2r72	T	A	7: 85,737,861	I832F	probably benign	Het
Yipf1	A	C	4: 107,336,158	E80D	probably benign	Het
Zfp40	T	A	17: 23,175,655	R653W	probably damaging	Het
Zxdc	A	G	6: 90,372,553	T308A	probably damaging	Het

Other mutations in Trmt10b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01064:Trmt10b	APN	4	45314347	missense	possibly damaging	0.91
IGL01743:Trmt10b	APN	4	45305879	missense	probably damaging	1.00
IGL02012:Trmt10b	APN	4	45315045	missense	probably benign	0.00
IGL02174:Trmt10b	APN	4	45308508	missense	possibly damaging	0.88
R0454:Trmt10b	UTSW	4	45304286	missense	probably damaging	1.00
R0506:Trmt10b	UTSW	4	45304306	missense	probably damaging	0.98
R1757:Trmt10b	UTSW	4	45307946	missense	probably damaging	1.00
R1962:Trmt10b	UTSW	4	45314378	nonsense	probably null
R2944:Trmt10b	UTSW	4	45300445	start codon destroyed	probably null	0.99
R5802:Trmt10b	UTSW	4	45314236	unclassified	probably benign
R6400:Trmt10b	UTSW	4	45308562	missense	probably damaging	1.00
R6460:Trmt10b	UTSW	4	45314322	missense	possibly damaging	0.81
R7165:Trmt10b	UTSW	4	45308549	missense	probably damaging	1.00
R7182:Trmt10b	UTSW	4	45308520	missense	probably benign	0.36

Predicted Primers

PCR Primer
(F):5'- TCCTGAGTGAAAGGAGCCAG -3'
(R):5'- ATAAGGATGTCATAGGTGGAGATCC -3'

Sequencing Primer
(F):5'- TAGCCCACGACAGTCTCATGG -3'
(R):5'- GGAGATCCAGCTTTATGTCAAAG -3'

Posted On

2015-12-21