Incidental Mutation 'R4781:Trmt10b'
ID 366476
Institutional Source Beutler Lab
Gene Symbol Trmt10b
Ensembl Gene ENSMUSG00000035601
Gene Name tRNA methyltransferase 10B
Synonyms
MMRRC Submission 042415-MU
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.256) question?
Stock # R4781 (G1)
Quality Score 225
Status Validated
Chromosome 4
Chromosomal Location 45297127-45316131 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to A at 45305817 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Asparagine at position 164 (I164N)
Ref Sequence ENSEMBL: ENSMUSP00000103429 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000044673] [ENSMUST00000107800] [ENSMUST00000144781]
AlphaFold Q9D075
Predicted Effect probably damaging
Transcript: ENSMUST00000044673
AA Change: I166N

PolyPhen 2 Score 0.970 (Sensitivity: 0.77; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000041052
Gene: ENSMUSG00000035601
AA Change: I166N

DomainStartEndE-ValueType
low complexity region 76 95 N/A INTRINSIC
low complexity region 110 122 N/A INTRINSIC
Pfam:tRNA_m1G_MT 135 308 2.6e-46 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000107800
AA Change: I164N

PolyPhen 2 Score 0.984 (Sensitivity: 0.74; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000103429
Gene: ENSMUSG00000035601
AA Change: I164N

DomainStartEndE-ValueType
low complexity region 76 95 N/A INTRINSIC
low complexity region 108 120 N/A INTRINSIC
Pfam:tRNA_m1G_MT 133 306 1.6e-46 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000126972
Predicted Effect noncoding transcript
Transcript: ENSMUST00000141659
Predicted Effect noncoding transcript
Transcript: ENSMUST00000142785
Predicted Effect probably benign
Transcript: ENSMUST00000144781
SMART Domains Protein: ENSMUSP00000114832
Gene: ENSMUSG00000035601

DomainStartEndE-ValueType
low complexity region 76 95 N/A INTRINSIC
low complexity region 110 122 N/A INTRINSIC
Meta Mutation Damage Score 0.7839 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 95.0%
Validation Efficiency 100% (74/74)
Allele List at MGI
Other mutations in this stock
Total: 66 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2310022A10Rik T A 7: 27,571,651 I157N probably damaging Het
Adgrl3 T C 5: 81,760,724 Y1165H probably damaging Het
Adra2a A G 19: 54,046,495 D94G probably damaging Het
Akr1c20 T A 13: 4,508,175 K197* probably null Het
Ankrd65 C T 4: 155,793,036 H335Y possibly damaging Het
Axin2 T A 11: 108,943,856 L636Q probably damaging Het
BC147527 A C 13: 120,308,162 K6T possibly damaging Het
Camk1g G T 1: 193,356,344 T90N probably benign Het
Cd177 C A 7: 24,750,626 C528F probably damaging Het
Cntnap5a A T 1: 116,412,201 D730V possibly damaging Het
Crtap T C 9: 114,386,236 D195G probably benign Het
Csn1s2b A G 5: 87,819,093 S74G possibly damaging Het
Cyp3a16 T C 5: 145,456,112 R128G possibly damaging Het
Dnah7a A G 1: 53,425,208 F3675L probably benign Het
Dram2 T A 3: 106,571,676 W195R probably damaging Het
E130308A19Rik C T 4: 59,691,057 P297L probably benign Het
Eif3i T C 4: 129,595,273 S83G probably benign Het
Gabra1 G A 11: 42,133,661 P396S probably damaging Het
Gipr T A 7: 19,157,375 Y459F possibly damaging Het
Gm11677 C T 11: 111,724,711 noncoding transcript Het
Gm6981 T C 9: 52,002,756 noncoding transcript Het
Grin2d T C 7: 45,862,481 D180G probably damaging Het
Hectd4 T G 5: 121,306,107 probably null Het
Hhat T C 1: 192,686,979 probably benign Het
Hoxa6 A G 6: 52,206,420 L215P possibly damaging Het
Hsf4 G A 8: 105,274,752 probably null Het
Igf1r G A 7: 68,165,199 A283T possibly damaging Het
Ighv15-2 A G 12: 114,564,856 S25P probably damaging Het
Inpp5a C T 7: 139,478,005 T43I probably benign Het
Kmt2c T A 5: 25,443,825 E82V probably damaging Het
Lrrc31 A G 3: 30,687,377 probably benign Het
Mdga2 A G 12: 66,797,622 probably null Het
Mefv G A 16: 3,715,334 P358S probably benign Het
Mrgpra9 A G 7: 47,235,047 F291L possibly damaging Het
Mtmr3 A G 11: 4,488,435 L673P probably benign Het
Muc19 T C 15: 91,903,166 noncoding transcript Het
Myo5b A T 18: 74,744,681 T1584S possibly damaging Het
Olfr1375 A T 11: 51,048,480 R124S probably damaging Het
Olfr1427 T C 19: 12,099,367 T91A probably benign Het
Palld G T 8: 61,877,028 R272S probably benign Het
Pcnx3 T A 19: 5,687,130 N144Y probably damaging Het
Prf1 A G 10: 61,300,424 K160E probably damaging Het
Rasgrp1 G A 2: 117,291,709 A400V probably benign Het
Rnf150 A G 8: 82,864,152 Y48C probably damaging Het
Rpl11 G T 4: 136,050,288 Q170K probably benign Het
Scin G A 12: 40,081,764 A257V possibly damaging Het
Scn7a C A 2: 66,703,760 A524S possibly damaging Het
Sim1 T C 10: 50,983,785 L581S probably benign Het
Skor1 T C 9: 63,144,459 T715A probably benign Het
Slc22a26 A G 19: 7,790,135 V301A probably benign Het
Sorcs1 T C 19: 50,182,681 Y923C probably damaging Het
Src T A 2: 157,467,485 M304K possibly damaging Het
Srgap3 A T 6: 112,757,425 probably benign Het
Stard3 G A 11: 98,372,334 E72K possibly damaging Het
Svep1 T A 4: 58,070,340 N2482I probably damaging Het
Tbc1d23 T C 16: 57,218,415 K20R possibly damaging Het
Tfip11 G A 5: 112,333,399 E414K probably damaging Het
Tinag G T 9: 76,996,950 T397K possibly damaging Het
Traf7 C G 17: 24,510,438 probably benign Het
Trpm1 A G 7: 64,235,052 D827G probably benign Het
Ube2u A T 4: 100,486,658 T85S probably benign Het
Ulk4 T C 9: 121,103,576 D1066G probably benign Het
Vmn2r72 T A 7: 85,737,861 I832F probably benign Het
Yipf1 A C 4: 107,336,158 E80D probably benign Het
Zfp40 T A 17: 23,175,655 R653W probably damaging Het
Zxdc A G 6: 90,372,553 T308A probably damaging Het
Other mutations in Trmt10b
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01064:Trmt10b APN 4 45314347 missense possibly damaging 0.91
IGL01743:Trmt10b APN 4 45305879 missense probably damaging 1.00
IGL02012:Trmt10b APN 4 45315045 missense probably benign 0.00
IGL02174:Trmt10b APN 4 45308508 missense possibly damaging 0.88
R0454:Trmt10b UTSW 4 45304286 missense probably damaging 1.00
R0506:Trmt10b UTSW 4 45304306 missense probably damaging 0.98
R1757:Trmt10b UTSW 4 45307946 missense probably damaging 1.00
R1962:Trmt10b UTSW 4 45314378 nonsense probably null
R2944:Trmt10b UTSW 4 45300445 start codon destroyed probably null 0.99
R5802:Trmt10b UTSW 4 45314236 unclassified probably benign
R6400:Trmt10b UTSW 4 45308562 missense probably damaging 1.00
R6460:Trmt10b UTSW 4 45314322 missense possibly damaging 0.81
R7165:Trmt10b UTSW 4 45308549 missense probably damaging 1.00
R7182:Trmt10b UTSW 4 45308520 missense probably benign 0.36
R8399:Trmt10b UTSW 4 45305870 missense possibly damaging 0.70
R8805:Trmt10b UTSW 4 45301281 missense probably benign 0.31
R9778:Trmt10b UTSW 4 45314374 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TCCTGAGTGAAAGGAGCCAG -3'
(R):5'- ATAAGGATGTCATAGGTGGAGATCC -3'

Sequencing Primer
(F):5'- TAGCCCACGACAGTCTCATGG -3'
(R):5'- GGAGATCCAGCTTTATGTCAAAG -3'
Posted On 2015-12-21