Mutagenetix > Incidental Mutation

Incidental Mutation 'R4787:L3mbtl2'

367198

Institutional Source

Beutler Lab

Gene Symbol

L3mbtl2

Ensembl Gene

ENSMUSG00000022394

Gene Name

L3MBTL2 polycomb repressive complex 1 subunit

Synonyms

4732493N06Rik, m4mbt

MMRRC Submission

041975-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4787 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

81548090-81572516 bp(+) (GRCm39)

Type of Mutation

utr 5 prime

DNA Base Change (assembly)

A to G at 81548175 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000133967 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023029] [ENSMUST00000172568] [ENSMUST00000172748] [ENSMUST00000174229]

AlphaFold

P59178

Predicted Effect

probably benign
Transcript: ENSMUST00000023029

SMART Domains

Protein: ENSMUSP00000023029
Gene: ENSMUSG00000022394

Domain	Start	End	E-Value	Type
low complexity region	8	21	N/A	INTRINSIC
low complexity region	35	57	N/A	INTRINSIC
PDB:2W0T\|A	82	110	6e-14	PDB
low complexity region	111	126	N/A	INTRINSIC
MBT	179	283	3.8e-26	SMART
MBT	291	391	9.68e-42	SMART
MBT	402	500	6.87e-24	SMART
MBT	508	604	2.57e-55	SMART
low complexity region	613	632	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000172568

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000172620

Predicted Effect

probably benign
Transcript: ENSMUST00000172748

SMART Domains

Protein: ENSMUSP00000134333
Gene: ENSMUSG00000022394

Domain	Start	End	E-Value	Type
low complexity region	8	21	N/A	INTRINSIC
low complexity region	35	57	N/A	INTRINSIC
PDB:2W0T\|A	82	110	1e-13	PDB
low complexity region	111	126	N/A	INTRINSIC
MBT	179	283	3.8e-26	SMART
MBT	291	391	9.68e-42	SMART
MBT	402	500	6.87e-24	SMART
MBT	508	604	2.57e-55	SMART
low complexity region	613	632	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173105

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173607

Predicted Effect

probably benign
Transcript: ENSMUST00000174229

SMART Domains

Protein: ENSMUSP00000133967
Gene: ENSMUSG00000022394

Domain	Start	End	E-Value	Type
low complexity region	8	21	N/A	INTRINSIC
low complexity region	35	57	N/A	INTRINSIC
PDB:2W0T\|A	82	110	8e-14	PDB
low complexity region	111	126	N/A	INTRINSIC
MBT	179	283	3.8e-26	SMART
MBT	291	391	9.68e-42	SMART
MBT	402	500	6.87e-24	SMART
MBT	508	604	2.57e-55	SMART
low complexity region	613	632	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174274

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.6%

Validation Efficiency

100% (72/72)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit failure of the inner cell mass to form a normal primitive ectoderm capable of gastrulation leading to abnormal embryo development, embryonic growth arrest, and lethality during organogenesis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700030K09Rik	C	A	8: 73,199,008 (GRCm39)	Y138*	probably null	Het
4933440M02Rik	T	C	7: 124,930,714 (GRCm39)		noncoding transcript	Het
Amy2b	T	C	3: 113,058,634 (GRCm39)		noncoding transcript	Het
Anxa1	T	A	19: 20,351,118 (GRCm39)	D334V	probably damaging	Het
Atoh8	T	C	6: 72,200,761 (GRCm39)	T310A	possibly damaging	Het
BC002059	G	A	17: 17,193,810 (GRCm39)		noncoding transcript	Het
Ccdc40	A	G	11: 119,144,447 (GRCm39)	D924G	possibly damaging	Het
Ccm2l	A	T	2: 152,921,422 (GRCm39)	M433L	probably benign	Het
Cd209e	T	C	8: 3,901,181 (GRCm39)	S158G	probably null	Het
Cdkn2a	C	T	4: 89,194,955 (GRCm39)	R153H	unknown	Het
Cfap69	A	G	5: 5,696,934 (GRCm39)		probably null	Het
Col6a5	T	C	9: 105,808,280 (GRCm39)	T923A	unknown	Het
Cybb	C	G	X: 9,316,989 (GRCm39)	D246H	probably benign	Het
Ddrgk1	A	G	2: 130,500,248 (GRCm39)	F216S	probably damaging	Het
Dysf	T	A	6: 84,180,310 (GRCm39)	C1995*	probably null	Het
Epb41l5	G	A	1: 119,523,725 (GRCm39)	P467S	probably benign	Het
Extl1	G	A	4: 134,091,978 (GRCm39)	L292F	probably damaging	Het
Fsd1	A	G	17: 56,303,257 (GRCm39)	N409D	possibly damaging	Het
Gm15455	A	T	1: 33,876,803 (GRCm39)		noncoding transcript	Het
Gm8894	A	G	14: 55,658,172 (GRCm39)		noncoding transcript	Het
Gtf3c2	C	T	5: 31,314,921 (GRCm39)	S942N	probably benign	Het
Gvin-ps3	T	C	7: 105,681,041 (GRCm39)		noncoding transcript	Het
H2-Ab1	A	T	17: 34,486,441 (GRCm39)	T167S	possibly damaging	Het
Ighv8-9	C	T	12: 115,432,134 (GRCm39)	R59H	probably damaging	Het
Igsf9b	G	A	9: 27,228,752 (GRCm39)	V171I	probably benign	Het
Il31ra	C	T	13: 112,664,079 (GRCm39)	E533K	possibly damaging	Het
Iqgap1	A	C	7: 80,385,261 (GRCm39)	L1022R	probably damaging	Het
Kcna4	T	C	2: 107,126,813 (GRCm39)	F516L	probably damaging	Het
Kmt2e	A	G	5: 23,668,081 (GRCm39)	T47A	possibly damaging	Het
Ldhb-ps	C	A	19: 21,915,601 (GRCm39)		noncoding transcript	Het
Lipo3	T	A	19: 33,757,749 (GRCm39)	Q240L	probably benign	Het
Lpar5	A	G	6: 125,059,461 (GRCm39)		probably null	Het
Lrrk2	A	G	15: 91,597,031 (GRCm39)	D541G	probably benign	Het
Med9	T	A	11: 59,839,266 (GRCm39)	N58K	probably benign	Het
Meig1	A	G	2: 3,410,251 (GRCm39)	V83A	possibly damaging	Het
Natd1	A	C	11: 60,797,822 (GRCm39)	C34W	probably damaging	Het
Nup205	T	A	6: 35,178,996 (GRCm39)	C689S	probably damaging	Het
Or4c104	T	A	2: 88,586,219 (GRCm39)	K267*	probably null	Het
Or52u1	T	C	7: 104,237,167 (GRCm39)	M52T	probably benign	Het
Or5d35	T	C	2: 87,855,204 (GRCm39)	M46T	possibly damaging	Het
Or6a2	G	A	7: 106,600,293 (GRCm39)	A258V	probably benign	Het
Pdgfrb	A	C	18: 61,212,759 (GRCm39)	S888R	probably damaging	Het
Plppr4	T	C	3: 117,115,979 (GRCm39)	E626G	probably damaging	Het
Ppfia3	C	A	7: 44,990,050 (GRCm39)	A1159S	possibly damaging	Het
Pramel32	T	A	4: 88,547,450 (GRCm39)	K74*	probably null	Het
Prex1	A	G	2: 166,480,260 (GRCm39)	V160A	probably benign	Het
Psmb7	C	T	2: 38,478,283 (GRCm39)	C247Y	probably benign	Het
Rbm33	C	T	5: 28,547,435 (GRCm39)		probably null	Het
Rfc5	T	C	5: 117,520,485 (GRCm39)	T236A	probably benign	Het
Sdk1	G	T	5: 141,568,168 (GRCm39)	R122L	probably benign	Het
Sh3bp1	T	C	15: 78,792,195 (GRCm39)	S451P	possibly damaging	Het
Smap1	G	T	1: 23,888,347 (GRCm39)		probably benign	Het
Smc2	T	A	4: 52,462,927 (GRCm39)	V639E	probably damaging	Het
Synpo2l	T	A	14: 20,711,765 (GRCm39)	Q511L	possibly damaging	Het
Taok2	G	A	7: 126,467,304 (GRCm39)	S167L	possibly damaging	Het
Tbc1d17	G	A	7: 44,492,488 (GRCm39)	P392S	probably benign	Het
Tef	T	A	15: 81,707,758 (GRCm39)	I261N	probably damaging	Het
Tmbim1	T	C	1: 74,334,519 (GRCm39)	N14D	possibly damaging	Het
Tmprss11c	T	C	5: 86,404,312 (GRCm39)	K121R	probably benign	Het
Trim36	C	A	18: 46,305,599 (GRCm39)	M461I	probably benign	Het
Trpc1	T	A	9: 95,603,468 (GRCm39)	M355L	probably benign	Het
Tspyl4	A	C	10: 34,173,760 (GRCm39)	D84A	probably benign	Het
Twf1	G	T	15: 94,482,315 (GRCm39)	P144T	probably damaging	Het
Ugt1a7c	T	C	1: 88,023,392 (GRCm39)	C184R	probably damaging	Het
Unc79	C	T	12: 103,013,257 (GRCm39)	P283S	probably damaging	Het
Usp45	T	C	4: 21,796,860 (GRCm39)	C49R	probably benign	Het
Wdr11	T	A	7: 129,210,658 (GRCm39)		probably benign	Het
Wdr27	A	T	17: 15,152,816 (GRCm39)	M97K	possibly damaging	Het

Other mutations in L3mbtl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01111:L3mbtl2	APN	15	81,569,099 (GRCm39)	missense	possibly damaging	0.89
IGL01380:L3mbtl2	APN	15	81,555,326 (GRCm39)	missense	possibly damaging	0.75
IGL01479:L3mbtl2	APN	15	81,560,593 (GRCm39)	missense	probably benign	0.05
IGL02943:L3mbtl2	APN	15	81,570,456 (GRCm39)	missense	possibly damaging	0.56
IGL03406:L3mbtl2	APN	15	81,566,194 (GRCm39)	missense	probably damaging	1.00
PIT4431001:L3mbtl2	UTSW	15	81,560,508 (GRCm39)	missense	probably benign	0.32
R0393:L3mbtl2	UTSW	15	81,552,942 (GRCm39)	missense	probably damaging	1.00
R0394:L3mbtl2	UTSW	15	81,552,942 (GRCm39)	missense	probably damaging	1.00
R0449:L3mbtl2	UTSW	15	81,552,942 (GRCm39)	missense	probably damaging	1.00
R0565:L3mbtl2	UTSW	15	81,568,487 (GRCm39)	splice site	probably benign
R1263:L3mbtl2	UTSW	15	81,567,169 (GRCm39)	missense	probably benign	0.00
R1426:L3mbtl2	UTSW	15	81,560,518 (GRCm39)	missense	possibly damaging	0.95
R1542:L3mbtl2	UTSW	15	81,566,352 (GRCm39)	missense	probably null	0.45
R1556:L3mbtl2	UTSW	15	81,566,203 (GRCm39)	missense	probably benign	0.23
R1922:L3mbtl2	UTSW	15	81,559,822 (GRCm39)	missense	probably damaging	1.00
R2135:L3mbtl2	UTSW	15	81,566,215 (GRCm39)	missense	possibly damaging	0.94
R2237:L3mbtl2	UTSW	15	81,568,531 (GRCm39)	missense	probably benign
R4112:L3mbtl2	UTSW	15	81,566,170 (GRCm39)	missense	possibly damaging	0.90
R4577:L3mbtl2	UTSW	15	81,570,486 (GRCm39)	missense	probably benign
R4583:L3mbtl2	UTSW	15	81,569,107 (GRCm39)	missense	probably damaging	1.00
R4779:L3mbtl2	UTSW	15	81,566,813 (GRCm39)	missense	probably benign
R5448:L3mbtl2	UTSW	15	81,568,534 (GRCm39)	missense	possibly damaging	0.93
R5776:L3mbtl2	UTSW	15	81,569,072 (GRCm39)	missense	probably damaging	1.00
R6019:L3mbtl2	UTSW	15	81,571,143 (GRCm39)	missense	probably benign	0.00
R6058:L3mbtl2	UTSW	15	81,551,555 (GRCm39)	missense	probably benign
R6259:L3mbtl2	UTSW	15	81,566,128 (GRCm39)	missense	probably damaging	1.00
R7178:L3mbtl2	UTSW	15	81,555,275 (GRCm39)	missense	probably benign	0.00
R7311:L3mbtl2	UTSW	15	81,551,588 (GRCm39)	missense	possibly damaging	0.76
R8797:L3mbtl2	UTSW	15	81,569,615 (GRCm39)	missense	possibly damaging	0.61
R8857:L3mbtl2	UTSW	15	81,571,320 (GRCm39)	missense	unknown
R9035:L3mbtl2	UTSW	15	81,560,744 (GRCm39)	intron	probably benign
R9718:L3mbtl2	UTSW	15	81,572,123 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- TCGCATTACTAAGGCAACGAC -3'
(R):5'- AAGCTCCGTACCTCAGTTTAC -3'

Sequencing Primer
(F):5'- TAAGGCAACGACCCTTTTCG -3'
(R):5'- CAGTTTACCAATCCTGCAACTG -3'

Posted On

2015-12-29