Mutagenetix > Incidental Mutation

Incidental Mutation 'R0412:H2-T13'

36740

Institutional Source

Beutler Lab

Gene Symbol

H2-T13

Ensembl Gene

Gene Name

histocompatibility 2, T region locus 13

Synonyms

blastocyst MHC, H-2T13, H2-Bl

MMRRC Submission

038614-MU

Accession Numbers

Essential gene?

Not available question?

Stock #

R0412 (G1)

Quality Score

172

Status

Validated

Chromosome

Chromosomal Location

36391007-36395115 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to A at 36392413 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000141253 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000173080] [ENSMUST00000183560] [ENSMUST00000183999] [ENSMUST00000184502] [ENSMUST00000185087] [ENSMUST00000195838] [ENSMUST00000185167] [ENSMUST00000195833] [ENSMUST00000194244] [ENSMUST00000192532]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000173080

SMART Domains

Protein: ENSMUSP00000134155
Gene: ENSMUSG00000073406

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	22	200	1.6e-88	PFAM
IGc1	219	289	6.29e-19	SMART
transmembrane domain	305	327	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000173674

SMART Domains

Protein: ENSMUSP00000134330
Gene: ENSMUSG00000073406

Domain	Start	End	E-Value	Type
low complexity region	6	14	N/A	INTRINSIC
SCOP:d1dr9a2	21	36	4e-5	SMART
transmembrane domain	46	68	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000183560

SMART Domains

Protein: ENSMUSP00000138812
Gene: ENSMUSG00000073406

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
transmembrane domain	32	54	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000183999

SMART Domains

Protein: ENSMUSP00000139165
Gene: ENSMUSG00000073406

Domain	Start	End	E-Value	Type
low complexity region	6	14	N/A	INTRINSIC
SCOP:d1dr9a2	21	36	4e-5	SMART
transmembrane domain	46	68	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000184502

SMART Domains

Protein: ENSMUSP00000139275
Gene: ENSMUSG00000073406

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	22	200	6.8e-89	PFAM
transmembrane domain	214	236	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000184850

Predicted Effect

probably benign
Transcript: ENSMUST00000185087

SMART Domains

Protein: ENSMUSP00000139166
Gene: ENSMUSG00000073406

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	22	113	5.2e-44	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000195838

SMART Domains

Protein: ENSMUSP00000141253
Gene: ENSMUSG00000073406

Domain	Start	End	E-Value	Type
Pfam:MHC_I	12	189	1e-82	PFAM
IGc1	208	278	6.29e-19	SMART
transmembrane domain	294	316	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000185167

SMART Domains

Protein: ENSMUSP00000139373
Gene: ENSMUSG00000073406

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000195833

SMART Domains

Protein: ENSMUSP00000141271
Gene: ENSMUSG00000073406

Domain	Start	End	E-Value	Type
Pfam:MHC_I	12	107	1.8e-37	PFAM
IGc1	116	186	6.29e-19	SMART
transmembrane domain	202	224	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000194244

SMART Domains

Protein: ENSMUSP00000141809
Gene: ENSMUSG00000073406

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	22	118	2.9e-43	PFAM
IGc1	127	197	6.29e-19	SMART
transmembrane domain	213	235	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000192532

SMART Domains

Protein: ENSMUSP00000142113
Gene: ENSMUSG00000073406

Domain	Start	End	E-Value	Type
Pfam:MHC_I	12	190	1.4e-88	PFAM
IGc1	209	279	6.29e-19	SMART
transmembrane domain	295	317	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.2%
10x: 95.8%
20x: 90.2%

Validation Efficiency

94% (67/71)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Arap1	C	A	7: 101,039,429 (GRCm39)	A563D	probably damaging	Het
Arhgap28	G	A	17: 68,203,253 (GRCm39)	L67F	probably damaging	Het
Atp7b	G	T	8: 22,485,675 (GRCm39)		probably null	Het
Auts2	A	G	5: 131,475,669 (GRCm39)	F485L	probably benign	Het
Ccdc68	A	G	18: 70,093,510 (GRCm39)	E239G	probably damaging	Het
Cdc42bpg	T	G	19: 6,363,487 (GRCm39)	L449R	probably damaging	Het
Colgalt2	G	T	1: 152,384,312 (GRCm39)	A551S	possibly damaging	Het
Ddx41	G	T	13: 55,678,421 (GRCm39)	S630Y	probably damaging	Het
Dntt	T	C	19: 41,031,372 (GRCm39)	L274P	probably damaging	Het
Fhl4	G	T	10: 84,934,680 (GRCm39)	H34N	possibly damaging	Het
Filip1	A	T	9: 79,727,571 (GRCm39)	N349K	possibly damaging	Het
Gm9894	C	T	13: 67,913,145 (GRCm39)		noncoding transcript	Het
Gpr179	A	G	11: 97,229,633 (GRCm39)	S841P	probably damaging	Het
Gpr35	G	T	1: 92,910,506 (GRCm39)	V73L	probably benign	Het
Grik5	A	G	7: 24,713,099 (GRCm39)	V809A	possibly damaging	Het
Heatr5b	T	C	17: 79,128,283 (GRCm39)	T451A	probably benign	Het
Hmcn2	G	A	2: 31,278,259 (GRCm39)	V1654M	probably damaging	Het
Htra3	G	T	5: 35,828,409 (GRCm39)	A157E	probably damaging	Het
Igf2r	A	T	17: 12,902,835 (GRCm39)	V2405D	probably damaging	Het
Irs3	C	A	5: 137,642,139 (GRCm39)	R433L	probably benign	Het
Kcmf1	G	A	6: 72,825,224 (GRCm39)	Q239*	probably null	Het
Kcnk9	A	G	15: 72,384,905 (GRCm39)		probably benign	Het
Kif28	A	G	1: 179,530,091 (GRCm39)	V622A	probably benign	Het
Klrb1f	A	T	6: 129,031,294 (GRCm39)	I164F	probably benign	Het
Lama2	A	G	10: 27,066,621 (GRCm39)	S1087P	possibly damaging	Het
Mchr1	A	T	15: 81,119,948 (GRCm39)		probably benign	Het
Mcidas	A	G	13: 113,135,677 (GRCm39)	T367A	probably damaging	Het
Mphosph8	A	C	14: 56,911,870 (GRCm39)	K298Q	probably damaging	Het
Mroh2a	G	T	1: 88,162,938 (GRCm39)	Q360H	probably benign	Het
Mst1	A	C	9: 107,960,793 (GRCm39)	D461A	probably benign	Het
Nckap1l	A	T	15: 103,373,079 (GRCm39)	S311C	probably benign	Het
Or2y1	T	A	11: 49,385,594 (GRCm39)	V78E	probably damaging	Het
Or4c125	T	A	2: 89,170,422 (GRCm39)	M75L	probably benign	Het
Or5m9b	C	T	2: 85,905,435 (GRCm39)	A117V	probably benign	Het
Or8c11	A	C	9: 38,290,090 (GRCm39)	K298N	probably damaging	Het
Pde3a	T	G	6: 141,444,410 (GRCm39)	C1073G	probably damaging	Het
Pkhd1	T	C	1: 20,188,012 (GRCm39)	D3432G	probably damaging	Het
Ppargc1b	G	T	18: 61,448,932 (GRCm39)	P130Q	probably damaging	Het
Ppp6r1	A	G	7: 4,645,213 (GRCm39)	I228T	probably damaging	Het
Pram1	A	G	17: 33,860,480 (GRCm39)	N349S	probably benign	Het
Ranbp6	C	T	19: 29,789,483 (GRCm39)	V290I	possibly damaging	Het
Rcan3	A	T	4: 135,143,914 (GRCm39)		probably null	Het
Scn8a	G	C	15: 100,906,187 (GRCm39)		probably benign	Het
Slc12a5	C	T	2: 164,835,982 (GRCm39)	T900M	probably benign	Het
Srsf10	A	G	4: 135,585,714 (GRCm39)	Y55C	probably damaging	Het
Syt7	G	T	19: 10,421,444 (GRCm39)	E450*	probably null	Het
Tbrg4	T	C	11: 6,573,832 (GRCm39)	K130R	probably benign	Het
Tgm7	C	A	2: 120,931,546 (GRCm39)	V206F	probably damaging	Het
Tmem131l	T	C	3: 83,938,955 (GRCm39)	D67G	probably damaging	Het
Ttc7	A	G	17: 87,637,472 (GRCm39)	K409R	probably benign	Het
Unc80	A	T	1: 66,590,096 (GRCm39)		probably benign	Het
Vmn1r171	C	T	7: 23,332,080 (GRCm39)	L102F	possibly damaging	Het
Vmn2r59	A	C	7: 41,695,916 (GRCm39)		probably benign	Het
Vsig2	A	G	9: 37,453,986 (GRCm39)	R191G	probably damaging	Het
Wdr86	T	A	5: 24,923,232 (GRCm39)	Q153H	probably benign	Het
Wdr87-ps	C	G	7: 29,229,995 (GRCm39)		noncoding transcript	Het
Xxylt1	T	A	16: 30,826,616 (GRCm39)	N233I	probably damaging	Het
Zfp160	A	T	17: 21,247,139 (GRCm39)	E563V	probably damaging	Het
Zfp345	T	A	2: 150,315,323 (GRCm39)	E71D	probably benign	Het
Zfp541	A	G	7: 15,816,099 (GRCm39)	D862G	possibly damaging	Het
Zfp639	A	C	3: 32,571,259 (GRCm39)	Q47P	possibly damaging	Het

Other mutations in H2-T13

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0396:H2-T13	UTSW	17	36,394,614 (GRCm39)	missense	possibly damaging	0.47
R0924:H2-T13	UTSW	17	36,394,824 (GRCm39)	missense	probably damaging	1.00
R1170:H2-T13	UTSW	17	36,391,983 (GRCm39)	missense	possibly damaging	0.66
R1211:H2-T13	UTSW	17	36,391,965 (GRCm39)	missense	probably damaging	1.00
R1902:H2-T13	UTSW	17	36,394,845 (GRCm39)	missense	probably damaging	1.00
R1913:H2-T13	UTSW	17	36,391,908 (GRCm39)	missense	probably damaging	0.99
R1992:H2-T13	UTSW	17	36,391,938 (GRCm39)	missense	probably damaging	0.98
R5538:H2-T13	UTSW	17	36,392,178 (GRCm39)	missense	probably benign	0.35
R6021:H2-T13	UTSW	17	36,392,166 (GRCm39)	missense	probably damaging	1.00
R7091:H2-T13	UTSW	17	36,394,833 (GRCm39)	missense	possibly damaging	0.94
R7200:H2-T13	UTSW	17	36,391,938 (GRCm39)	missense	possibly damaging	0.83
R7711:H2-T13	UTSW	17	36,394,770 (GRCm39)	missense	probably damaging	0.98
R8479:H2-T13	UTSW	17	36,395,111 (GRCm39)	missense	probably damaging	1.00
R9183:H2-T13	UTSW	17	36,392,382 (GRCm39)	missense	unknown
R9193:H2-T13	UTSW	17	36,391,956 (GRCm39)	missense	possibly damaging	0.46
R9375:H2-T13	UTSW	17	36,391,993 (GRCm39)	missense	possibly damaging	0.66
R9582:H2-T13	UTSW	17	36,392,375 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- ATTCTGCTCCTTCCCAAGAGGCAC -3'
(R):5'- ATGACCATGTTGACCCACTGGCTC -3'

Sequencing Primer
(F):5'- TAGAAGGTTCCATCCCCTGC -3'
(R):5'- atgtaagtacattgtagctgtcttc -3'

Posted On

2013-05-09