Mutagenetix > Incidental Mutation

Incidental Mutation 'R4793:Arhgap15'

368734

Institutional Source

Beutler Lab

Gene Symbol

Arhgap15

Ensembl Gene

ENSMUSG00000049744

Gene Name

Rho GTPase activating protein 15

Synonyms

5830480G12Rik

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.497) question?

Stock #

R4793 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

43638836-44285965 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 44032353 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Aspartic acid at position 312 (E312D)

Ref Sequence

ENSEMBL: ENSMUSP00000108443 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000055776] [ENSMUST00000112822] [ENSMUST00000112824]

AlphaFold

Q811M1

Predicted Effect

probably damaging
Transcript: ENSMUST00000055776
AA Change: E312D

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000056461
Gene: ENSMUSG00000049744
AA Change: E312D

Domain	Start	End	E-Value	Type
PH	88	199	1.24e-9	SMART
RhoGAP	298	473	1.55e-63	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000112822

SMART Domains

Protein: ENSMUSP00000108441
Gene: ENSMUSG00000049744

Domain	Start	End	E-Value	Type
Blast:PH	88	108	5e-6	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000112824
AA Change: E312D

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000108443
Gene: ENSMUSG00000049744
AA Change: E312D

Domain	Start	End	E-Value	Type
PH	88	199	1.24e-9	SMART
RhoGAP	298	469	1.16e-35	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128630

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.8%
20x: 93.9%

Validation Efficiency

100% (91/91)

MGI Phenotype

FUNCTION: The protein encoded by this gene is a RAC GTPase-activating protein that is regulated through its PH domain and by recruitment to the membrane. The protein accelerates hydrolysis of guanosine triphosphate to guanosine diphosphate to repress Rac activity. Knock-out of Arhgap15 function demonstrates that this gene is required to regulate multiple functions in macrophages and neutrophils. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Sep 2014]
PHENOTYPE: Mice homozygous for disruption of this gene display reduced leukocyte numbers and abnormally shaped macrophage. Chemotactic responses of macrophage are normal while neutrophile chemoattraction and bacterial pagocytosis are increased. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca6	T	A	11: 110,082,544 (GRCm39)	E1143V	probably benign	Het
Abi2	T	A	1: 60,448,963 (GRCm39)	M1K	probably null	Het
Acp2	T	C	2: 91,037,134 (GRCm39)	F205L	probably benign	Het
Adam17	T	C	12: 21,397,396 (GRCm39)	N219D	probably benign	Het
Aldh2	T	C	5: 121,707,042 (GRCm39)	S168G	probably damaging	Het
Calm5	T	C	13: 3,904,401 (GRCm39)	S32P	probably benign	Het
Capn12	G	A	7: 28,592,094 (GRCm39)	D671N	probably benign	Het
Ccdc73	A	G	2: 104,848,127 (GRCm39)		probably null	Het
Cdc20	T	A	4: 118,294,261 (GRCm39)	I20F	probably benign	Het
Cdh23	A	T	10: 60,167,129 (GRCm39)	I1841N	probably damaging	Het
Cftr	T	C	6: 18,226,087 (GRCm39)	V345A	probably damaging	Het
Col15a1	T	C	4: 47,262,997 (GRCm39)	S550P	possibly damaging	Het
Col4a4	A	G	1: 82,516,820 (GRCm39)	Y133H	unknown	Het
Csmd1	A	G	8: 16,138,277 (GRCm39)	S1592P	probably damaging	Het
Cts6	T	A	13: 61,349,626 (GRCm39)	M56L	probably benign	Het
Cybb	C	G	X: 9,316,989 (GRCm39)	D246H	probably benign	Het
Dock5	A	G	14: 68,037,803 (GRCm39)	S947P	probably benign	Het
Dpysl2	G	T	14: 67,052,498 (GRCm39)	A339D	possibly damaging	Het
Ebf2	A	G	14: 67,647,531 (GRCm39)	D360G	probably damaging	Het
Ensa	T	C	3: 95,532,489 (GRCm39)		probably null	Het
Fap	C	A	2: 62,374,713 (GRCm39)	V229F	probably damaging	Het
Fbn1	C	A	2: 125,163,155 (GRCm39)	G2116*	probably null	Het
Frmd4b	A	T	6: 97,272,822 (GRCm39)	S857T	probably damaging	Het
Fsip2	T	A	2: 82,818,044 (GRCm39)	Y4592*	probably null	Het
Fubp1	T	A	3: 151,928,966 (GRCm39)	Y135N	possibly damaging	Het
Gdap2	T	C	3: 100,078,234 (GRCm39)	L66P	probably damaging	Het
Gm10257	T	C	13: 101,083,305 (GRCm39)		noncoding transcript	Het
Gm1758	A	T	16: 14,325,036 (GRCm39)		noncoding transcript	Het
Gna13	T	C	11: 109,254,455 (GRCm39)		probably benign	Het
H2bc13	T	C	13: 21,900,088 (GRCm39)	S76G	probably benign	Het
Heatr1	T	C	13: 12,446,718 (GRCm39)	I1689T	probably benign	Het
Hephl1	A	G	9: 15,009,286 (GRCm39)	I102T	probably benign	Het
Hltf	T	G	3: 20,118,114 (GRCm39)	Y121D	possibly damaging	Het
Hspg2	T	C	4: 137,256,784 (GRCm39)	V1509A	possibly damaging	Het
Ifitm5	G	T	7: 140,530,077 (GRCm39)	R16S	probably benign	Het
Il1rap	A	C	16: 26,513,984 (GRCm39)	D239A	probably benign	Het
Kalrn	C	T	16: 33,810,180 (GRCm39)	D2525N	possibly damaging	Het
Kcna6	T	C	6: 126,715,519 (GRCm39)	I457V	probably damaging	Het
Kctd17	T	A	15: 78,317,224 (GRCm39)	L47Q	probably damaging	Het
Kdm1b	C	T	13: 47,216,553 (GRCm39)	R308W	probably damaging	Het
Klk14	G	A	7: 43,341,501 (GRCm39)	C51Y	probably damaging	Het
Lrrc63	A	G	14: 75,363,601 (GRCm39)	S177P	possibly damaging	Het
Lrriq1	T	C	10: 103,006,327 (GRCm39)	D1266G	probably benign	Het
Map3k2	G	T	18: 32,361,203 (GRCm39)	M554I	probably damaging	Het
Mst1r	T	A	9: 107,797,124 (GRCm39)	V1331E	probably damaging	Het
Musk	T	C	4: 58,373,400 (GRCm39)	I775T	probably damaging	Het
Mybl2	A	G	2: 162,916,683 (GRCm39)	K7E	probably damaging	Het
Nf1	T	C	11: 79,338,398 (GRCm39)	S1137P	probably damaging	Het
Nlrp5	A	G	7: 23,117,055 (GRCm39)	I260V	probably damaging	Het
Or13c7	A	T	4: 43,854,323 (GRCm39)	N5Y	probably benign	Het
Or9g4	A	C	2: 85,504,842 (GRCm39)	Y218D	probably damaging	Het
Or9s23	G	T	1: 92,501,207 (GRCm39)	A105S	possibly damaging	Het
Pabpc1l	C	T	2: 163,869,542 (GRCm39)	A114V	possibly damaging	Het
Plac8l1	T	A	18: 42,311,973 (GRCm39)	I149F	possibly damaging	Het
Pou6f1	T	A	15: 100,476,293 (GRCm39)	N531I	probably damaging	Het
Prdm10	A	G	9: 31,264,701 (GRCm39)	Y712C	probably damaging	Het
Ptbp3	T	C	4: 59,514,297 (GRCm39)	T43A	possibly damaging	Het
Ptpn13	T	C	5: 103,730,644 (GRCm39)		probably null	Het
Rnf135	T	C	11: 80,087,775 (GRCm39)		probably null	Het
Rusf1	A	T	7: 127,887,374 (GRCm39)		probably benign	Het
Serpinb3d	A	G	1: 107,005,951 (GRCm39)	L379P	probably damaging	Het
Sh2d6	T	A	6: 72,494,581 (GRCm39)	T124S	probably benign	Het
Slc26a5	G	A	5: 22,042,992 (GRCm39)	P153S	probably damaging	Het
Slc5a7	A	G	17: 54,588,822 (GRCm39)	F275S	possibly damaging	Het
Snx14	A	G	9: 88,276,495 (GRCm39)	S606P	probably damaging	Het
Sphkap	A	T	1: 83,255,805 (GRCm39)	I648K	possibly damaging	Het
Spon2	T	C	5: 33,371,904 (GRCm39)	T301A	probably damaging	Het
Srpra	C	T	9: 35,124,447 (GRCm39)	T48I	probably benign	Het
Taar9	G	A	10: 23,985,408 (GRCm39)	P9S	probably benign	Het
Tacc1	A	T	8: 25,672,405 (GRCm39)	S274R	possibly damaging	Het
Tc2n	A	G	12: 101,617,376 (GRCm39)	S348P	possibly damaging	Het
Timd2	G	T	11: 46,578,008 (GRCm39)	T41K	probably damaging	Het
Tmem132a	T	A	19: 10,842,857 (GRCm39)	E206V	probably damaging	Het
Tmt1a3	A	G	15: 100,232,889 (GRCm39)	M27V	probably benign	Het
Tpi1	A	T	6: 124,789,544 (GRCm39)		probably benign	Het
Traf5	T	G	1: 191,729,765 (GRCm39)	T429P	probably benign	Het
Trav4-3	A	G	14: 53,836,615 (GRCm39)	S27G	possibly damaging	Het
Tubd1	T	C	11: 86,457,895 (GRCm39)	M462T	probably benign	Het
Ube4a	T	C	9: 44,860,120 (GRCm39)	D314G	probably damaging	Het
Utp25	T	A	1: 192,796,116 (GRCm39)	Q50L	probably null	Het
Vmn2r58	G	T	7: 41,514,495 (GRCm39)	T158K	probably damaging	Het
Vmn2r68	C	A	7: 84,883,648 (GRCm39)	M152I	probably benign	Het
Vmn2r91	A	G	17: 18,325,658 (GRCm39)	E92G	probably damaging	Het
Wdr20rt	T	C	12: 65,273,395 (GRCm39)	V113A	probably damaging	Het
Zfp729a	T	C	13: 67,768,546 (GRCm39)	H561R	probably damaging	Het
Zfp804a	T	A	2: 82,066,186 (GRCm39)	D52E	probably damaging	Het

Other mutations in Arhgap15

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01533:Arhgap15	APN	2	44,133,165 (GRCm39)	missense	probably damaging	1.00
IGL01779:Arhgap15	APN	2	43,955,057 (GRCm39)	missense	possibly damaging	0.94
IGL02011:Arhgap15	APN	2	43,670,767 (GRCm39)	missense	probably damaging	1.00
IGL02506:Arhgap15	APN	2	43,953,820 (GRCm39)	missense	possibly damaging	0.73
IGL02659:Arhgap15	APN	2	43,953,849 (GRCm39)	missense	probably damaging	1.00
IGL02711:Arhgap15	APN	2	44,006,674 (GRCm39)	missense	possibly damaging	0.67
IGL02944:Arhgap15	APN	2	44,032,362 (GRCm39)	critical splice donor site	probably null
IGL02989:Arhgap15	APN	2	43,670,748 (GRCm39)	missense	probably damaging	1.00
PIT4468001:Arhgap15	UTSW	2	44,133,143 (GRCm39)	missense	probably damaging	1.00
R0140:Arhgap15	UTSW	2	44,212,779 (GRCm39)	missense	probably damaging	1.00
R0403:Arhgap15	UTSW	2	43,953,778 (GRCm39)	missense	probably damaging	0.98
R0557:Arhgap15	UTSW	2	44,006,629 (GRCm39)	missense	possibly damaging	0.60
R0616:Arhgap15	UTSW	2	44,006,729 (GRCm39)	critical splice donor site	probably null
R1122:Arhgap15	UTSW	2	44,032,307 (GRCm39)	missense	probably benign	0.43
R1958:Arhgap15	UTSW	2	44,133,136 (GRCm39)	missense	possibly damaging	0.67
R2258:Arhgap15	UTSW	2	44,276,359 (GRCm39)	missense	probably damaging	1.00
R2905:Arhgap15	UTSW	2	43,953,798 (GRCm39)	missense	probably damaging	0.97
R4788:Arhgap15	UTSW	2	43,638,902 (GRCm39)	start codon destroyed	probably null	0.02
R5040:Arhgap15	UTSW	2	43,734,825 (GRCm39)	critical splice donor site	probably null
R5093:Arhgap15	UTSW	2	44,212,767 (GRCm39)	missense	probably damaging	1.00
R5114:Arhgap15	UTSW	2	43,670,630 (GRCm39)	missense	probably benign	0.03
R5202:Arhgap15	UTSW	2	43,953,869 (GRCm39)	missense	probably benign	0.22
R5446:Arhgap15	UTSW	2	43,718,772 (GRCm39)	missense	probably benign	0.00
R5661:Arhgap15	UTSW	2	44,212,739 (GRCm39)	missense	possibly damaging	0.54
R6747:Arhgap15	UTSW	2	44,006,689 (GRCm39)	missense	probably damaging	1.00
R7392:Arhgap15	UTSW	2	43,953,786 (GRCm39)	missense	possibly damaging	0.61
R7502:Arhgap15	UTSW	2	43,670,630 (GRCm39)	missense	probably benign	0.03
R7630:Arhgap15	UTSW	2	43,670,648 (GRCm39)	missense	probably benign	0.01
R7658:Arhgap15	UTSW	2	44,032,280 (GRCm39)	missense	probably benign	0.18
R7735:Arhgap15	UTSW	2	44,006,642 (GRCm39)	missense	probably damaging	1.00
R8734:Arhgap15	UTSW	2	44,133,130 (GRCm39)	missense	probably damaging	1.00
R8743:Arhgap15	UTSW	2	43,638,876 (GRCm39)	start gained	probably benign

Predicted Primers

PCR Primer
(F):5'- ACACACAGTCTTTATACATCTGCC -3'
(R):5'- TCCCCATTGTAAAAGCAAACTG -3'

Sequencing Primer
(F):5'- TCTATGCAAGATGAAGATCTCGG -3'
(R):5'- GCAAACTGAAGTTAATAAGAAACCTG -3'

Posted On

2016-02-04