Mutagenetix > Incidental Mutation

Incidental Mutation 'R4795:Clock'

368924

Institutional Source

Beutler Lab

Gene Symbol

Clock

Ensembl Gene

ENSMUSG00000029238

Gene Name

clock circadian regulator

Synonyms

bHLHe8, KAT13D, 5330400M04Rik

MMRRC Submission

041996-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.728) question?

Stock #

R4795 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

76357715-76452639 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 76413763 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Arginine at position 44 (K44R)

Ref Sequence

ENSEMBL: ENSMUSP00000143939 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000075159] [ENSMUST00000202122] [ENSMUST00000202651]

AlphaFold

O08785

Predicted Effect

probably damaging
Transcript: ENSMUST00000075159
AA Change: K44R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000074656
Gene: ENSMUSG00000029238
AA Change: K44R

Domain	Start	End	E-Value	Type
HLH	40	90	7.77e-12	SMART
PAS	109	175	1.88e-6	SMART
PAS	264	330	3.65e-4	SMART
PAC	336	379	7.63e-7	SMART
low complexity region	426	446	N/A	INTRINSIC
low complexity region	478	493	N/A	INTRINSIC
coiled coil region	523	559	N/A	INTRINSIC
low complexity region	619	634	N/A	INTRINSIC
low complexity region	640	657	N/A	INTRINSIC
low complexity region	738	796	N/A	INTRINSIC
low complexity region	818	837	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000200957

Predicted Effect

probably damaging
Transcript: ENSMUST00000202122
AA Change: K44R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000144022
Gene: ENSMUSG00000029238
AA Change: K44R

Domain	Start	End	E-Value	Type
TFS2N	34	106	4.1e-3	SMART
HLH	40	90	3.4e-14	SMART
PAS	109	175	9.6e-9	SMART
PAS	264	330	1.8e-6	SMART
PAC	336	379	3.9e-9	SMART
low complexity region	426	446	N/A	INTRINSIC
low complexity region	478	493	N/A	INTRINSIC
coiled coil region	523	559	N/A	INTRINSIC
low complexity region	619	633	N/A	INTRINSIC
low complexity region	639	656	N/A	INTRINSIC
low complexity region	737	795	N/A	INTRINSIC
low complexity region	817	836	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000202651
AA Change: K44R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000143939
Gene: ENSMUSG00000029238
AA Change: K44R

Domain	Start	End	E-Value	Type
HLH	40	90	7.77e-12	SMART
PAS	109	175	1.88e-6	SMART
PAS	264	330	3.65e-4	SMART
PAC	336	379	7.63e-7	SMART
low complexity region	426	446	N/A	INTRINSIC
low complexity region	478	493	N/A	INTRINSIC
coiled coil region	523	559	N/A	INTRINSIC
low complexity region	619	634	N/A	INTRINSIC
low complexity region	640	657	N/A	INTRINSIC
low complexity region	738	796	N/A	INTRINSIC
low complexity region	818	837	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000202857

Meta Mutation Damage Score

0.7266

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.7%
20x: 93.7%

Validation Efficiency

98% (123/125)

MGI Phenotype

FUNCTION: The protein encoded by this gene plays a central role in the regulation of circadian rhythms. The protein encodes a transcription factor of the basic helix-loop-helix (bHLH) family and contains DNA binding histone acetyltransferase activity. The encoded protein forms a heterodimer with Arntl (Bmal1) that binds E-box enhancer elements upstream of Period (Per1, Per2, Per3) and Cryptochrome (Cry1, Cry2) genes and activates transcription of these genes. Per and Cry proteins heterodimerize and repress their own transcription by interacting in a feedback loop with Clock/Arntl complexes. Polymorphisms in this gene may be associated with behavioral changes, obesity, and metabolic syndrome. Two transcripts encoding the same protein have been found for this gene. [provided by RefSeq, Jan 2014]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit abnormal circadian phase. Mice homozygous for a spontaneous mutation exhibit abnormal circadian rhythm, reproduction, behavior, hair cycle, macronutrient absorption, and metabolism. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 105 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	T	G	3: 121,969,772 (GRCm39)	L2259R	probably damaging	Het
Acd	A	G	8: 106,427,647 (GRCm39)	S2P	possibly damaging	Het
Acsf3	A	G	8: 123,506,896 (GRCm39)	Y63C	possibly damaging	Het
Adam21	T	C	12: 81,607,748 (GRCm39)	I5V	probably benign	Het
Adamts6	C	A	13: 104,580,636 (GRCm39)	S783*	probably null	Het
Adamtsl1	T	C	4: 86,162,006 (GRCm39)		probably null	Het
Adck2	T	A	6: 39,553,327 (GRCm39)	S313T	probably benign	Het
Adgb	A	G	10: 10,233,616 (GRCm39)	I1285T	probably benign	Het
Angptl1	T	A	1: 156,688,153 (GRCm39)	M485K	possibly damaging	Het
Ank3	G	A	10: 69,694,095 (GRCm39)	V289I	probably benign	Het
Atp13a4	A	G	16: 29,308,826 (GRCm39)		probably null	Het
Atp1a1	A	G	3: 101,491,091 (GRCm39)	L648P	probably benign	Het
Atp2a3	A	G	11: 72,863,855 (GRCm39)	I194V	probably benign	Het
Bglap	A	C	3: 88,291,712 (GRCm39)	I4S	unknown	Het
Cacna1b	T	A	2: 24,527,499 (GRCm39)	T1621S	possibly damaging	Het
Ccdc112	T	A	18: 46,420,739 (GRCm39)	Q337L	probably benign	Het
Ccdc121rt3	A	G	5: 112,503,165 (GRCm39)	S180P	possibly damaging	Het
Cd34	T	G	1: 194,633,319 (GRCm39)	S194A	probably damaging	Het
Cdh20	A	G	1: 104,868,989 (GRCm39)	D160G	probably damaging	Het
Commd9	A	G	2: 101,729,241 (GRCm39)	N116D	probably benign	Het
Dab2	C	A	15: 6,459,092 (GRCm39)	P335T	probably benign	Het
Epb41l3	T	A	17: 69,555,714 (GRCm39)		probably null	Het
Epha2	A	G	4: 141,049,727 (GRCm39)		probably null	Het
Fam78b	T	C	1: 166,906,216 (GRCm39)	V125A	probably benign	Het
Fars2	A	T	13: 36,721,400 (GRCm39)	E448V	probably damaging	Het
Fkbpl	G	A	17: 34,864,303 (GRCm39)	A24T	probably benign	Het
Glyr1	A	C	16: 4,865,622 (GRCm39)	V44G	probably benign	Het
Gm1527	A	G	3: 28,974,812 (GRCm39)	I542V	possibly damaging	Het
Gm18856	C	A	13: 14,139,793 (GRCm39)		probably benign	Het
Gm44501	A	G	17: 40,889,605 (GRCm39)	K40E	probably benign	Het
Hdhd5	T	C	6: 120,500,407 (GRCm39)	H97R	probably benign	Het
Hmcn1	A	G	1: 150,629,362 (GRCm39)	V965A	probably benign	Het
Hsf5	A	G	11: 87,526,446 (GRCm39)	M373V	probably benign	Het
Igbp1b	C	T	6: 138,634,803 (GRCm39)	E214K	probably benign	Het
Iigp1	T	A	18: 60,522,964 (GRCm39)	F27L	probably benign	Het
Isl1	T	C	13: 116,441,966 (GRCm39)	N89S	probably benign	Het
Itga1	C	A	13: 115,171,921 (GRCm39)	W61C	probably damaging	Het
Itga5	T	C	15: 103,256,187 (GRCm39)	R922G	probably benign	Het
Kbtbd3	G	A	9: 4,331,073 (GRCm39)	W482*	probably null	Het
Kcnq1	A	G	7: 142,736,494 (GRCm39)	T168A	probably benign	Het
Lrch3	A	G	16: 32,826,074 (GRCm39)	N631S	probably damaging	Het
Lrrk1	T	A	7: 65,912,413 (GRCm39)	I1716F	possibly damaging	Het
Ly75	T	C	2: 60,180,284 (GRCm39)	E631G	probably benign	Het
Map4	T	C	9: 109,864,331 (GRCm39)	S519P	probably benign	Het
Mroh2a	A	G	1: 88,186,386 (GRCm39)	S64G	probably benign	Het
Mrtfa	C	T	15: 80,901,234 (GRCm39)	S419N	probably damaging	Het
Muc5b	A	G	7: 141,403,304 (GRCm39)	E755G	unknown	Het
Ncaph2	T	G	15: 89,255,010 (GRCm39)	V478G	probably damaging	Het
Ncbp1	A	G	4: 46,152,967 (GRCm39)	R247G	possibly damaging	Het
Necab1	G	T	4: 15,111,208 (GRCm39)	D73E	possibly damaging	Het
Nedd9	T	C	13: 41,471,376 (GRCm39)	K208E	probably benign	Het
Nfyb	A	T	10: 82,588,202 (GRCm39)		probably benign	Het
Nol4	T	C	18: 23,054,944 (GRCm39)	Q162R	probably damaging	Het
Nwd2	G	A	5: 63,962,776 (GRCm39)	D787N	probably benign	Het
Olfr908	T	A	9: 38,427,799 (GRCm39)	M157K	probably damaging	Het
Or10a5	A	T	7: 106,636,121 (GRCm39)	Y253F	probably benign	Het
Or11g7	A	C	14: 50,690,874 (GRCm39)	M122L	probably damaging	Het
Or13a22	A	G	7: 140,072,920 (GRCm39)	D123G	probably damaging	Het
Or5ac23	C	T	16: 59,149,213 (GRCm39)	V220I	probably benign	Het
Or6a2	C	T	7: 106,600,542 (GRCm39)	G175D	probably damaging	Het
Or6e1	A	G	14: 54,520,004 (GRCm39)	M116T	probably damaging	Het
Orai3	T	C	7: 127,373,060 (GRCm39)	V187A	probably benign	Het
Parn	T	C	16: 13,424,066 (GRCm39)	T444A	probably benign	Het
Pcdh11x	A	C	X: 119,309,937 (GRCm39)	N460T	probably damaging	Het
Pcnt	C	T	10: 76,205,858 (GRCm39)	R2516H	probably benign	Het
Pde4d	T	A	13: 110,074,705 (GRCm39)		probably benign	Het
Pdgfra	A	G	5: 75,349,972 (GRCm39)	N952S	probably benign	Het
Pgm2	A	G	5: 64,261,217 (GRCm39)	Y237C	probably damaging	Het
Plcb2	A	G	2: 118,541,605 (GRCm39)	V975A	probably benign	Het
Polk	T	C	13: 96,625,764 (GRCm39)	T347A	probably benign	Het
Ppp6r1	C	T	7: 4,644,053 (GRCm39)	V430M	possibly damaging	Het
Ptges2	C	A	2: 32,286,334 (GRCm39)	C16*	probably null	Het
Relb	A	T	7: 19,353,764 (GRCm39)	I38N	probably damaging	Het
Runx1t1	T	A	4: 13,837,767 (GRCm39)	N51K	probably damaging	Het
Samsn1	A	G	16: 75,680,733 (GRCm39)		probably benign	Het
Scrn1	A	G	6: 54,497,754 (GRCm39)	V279A	possibly damaging	Het
Sec31b	A	G	19: 44,520,185 (GRCm39)	S200P	probably benign	Het
Selp	A	G	1: 163,972,475 (GRCm39)	T705A	probably benign	Het
Slc2a1	G	A	4: 118,989,642 (GRCm39)	R61Q	probably damaging	Het
Slit3	G	A	11: 35,542,647 (GRCm39)		probably null	Het
Smo	T	A	6: 29,755,573 (GRCm39)	V415E	probably damaging	Het
Spag8	C	A	4: 43,652,035 (GRCm39)	V350L	possibly damaging	Het
Tbck	T	G	3: 132,413,559 (GRCm39)	L132R	possibly damaging	Het
Thnsl1	T	A	2: 21,216,856 (GRCm39)	C203*	probably null	Het
Tm9sf2	T	A	14: 122,387,252 (GRCm39)		probably null	Het
Tmem131	A	G	1: 36,880,757 (GRCm39)	V171A	probably damaging	Het
Tmem209	T	C	6: 30,501,954 (GRCm39)	T83A	probably benign	Het
Tmem63a	T	C	1: 180,782,416 (GRCm39)	Y138H	probably damaging	Het
Trim80	A	G	11: 115,338,769 (GRCm39)	Y533C	probably damaging	Het
Trpv2	A	G	11: 62,472,006 (GRCm39)	D66G	possibly damaging	Het
Trrap	T	A	5: 144,769,298 (GRCm39)	I2620N	probably benign	Het
Ttyh3	A	T	5: 140,620,541 (GRCm39)	I232N	probably damaging	Het
Ube2dnl1	G	A	X: 113,815,482 (GRCm39)	C119Y	possibly damaging	Het
Unc13c	T	A	9: 73,839,469 (GRCm39)	S461C	probably damaging	Het
Unc80	T	G	1: 66,567,100 (GRCm39)	I902S	probably damaging	Het
Usp42	C	A	5: 143,709,692 (GRCm39)	G170W	probably damaging	Het
Vldlr	T	C	19: 27,216,252 (GRCm39)		probably null	Het
Ywhab	A	G	2: 163,857,265 (GRCm39)	Y180C	probably damaging	Het
Zan	A	T	5: 137,379,112 (GRCm39)	C5329*	probably null	Het
Zbtb40	C	T	4: 136,725,953 (GRCm39)	M535I	probably benign	Het
Zdhhc1	CGGGGG	CGGGGGG	8: 106,210,376 (GRCm39)		probably null	Het
Zfp318	A	G	17: 46,722,988 (GRCm39)	T1664A	probably benign	Het
Zfp7	T	A	15: 76,775,546 (GRCm39)	C529*	probably null	Het
Zfp768	T	C	7: 126,942,547 (GRCm39)	Q527R	possibly damaging	Het
Zfp975	T	A	7: 42,314,570 (GRCm39)		probably null	Het

Other mutations in Clock

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00598:Clock	APN	5	76,377,311 (GRCm39)	missense	probably benign	0.17
IGL00725:Clock	APN	5	76,402,260 (GRCm39)	nonsense	probably null
IGL01304:Clock	APN	5	76,414,202 (GRCm39)	critical splice donor site	probably null
IGL01369:Clock	APN	5	76,384,933 (GRCm39)	missense	probably benign	0.30
IGL01542:Clock	APN	5	76,379,322 (GRCm39)	missense	possibly damaging	0.82
IGL02541:Clock	APN	5	76,410,519 (GRCm39)	splice site	probably null
IGL02602:Clock	APN	5	76,402,274 (GRCm39)	missense	probably damaging	1.00
IGL02602:Clock	APN	5	76,402,273 (GRCm39)	missense	probably null	1.00
IGL03186:Clock	APN	5	76,390,929 (GRCm39)	missense	probably damaging	0.98
IGL03309:Clock	APN	5	76,379,241 (GRCm39)	critical splice donor site	probably null
R6760_Clock_188	UTSW	5	76,374,823 (GRCm39)	missense	unknown
uhr	UTSW	5	76,377,401 (GRCm39)	nonsense	probably null
R0304:Clock	UTSW	5	76,374,832 (GRCm39)	missense	unknown
R0593:Clock	UTSW	5	76,413,683 (GRCm39)	missense	probably benign	0.25
R0654:Clock	UTSW	5	76,374,976 (GRCm39)	missense	possibly damaging	0.95
R0684:Clock	UTSW	5	76,393,365 (GRCm39)	missense	probably damaging	0.96
R0707:Clock	UTSW	5	76,374,976 (GRCm39)	missense	possibly damaging	0.95
R0751:Clock	UTSW	5	76,377,208 (GRCm39)	missense	possibly damaging	0.75
R0865:Clock	UTSW	5	76,414,271 (GRCm39)	splice site	probably benign
R0920:Clock	UTSW	5	76,378,167 (GRCm39)	missense	possibly damaging	0.80
R1396:Clock	UTSW	5	76,414,649 (GRCm39)	missense	probably benign	0.00
R1450:Clock	UTSW	5	76,410,578 (GRCm39)	nonsense	probably null
R1487:Clock	UTSW	5	76,414,201 (GRCm39)	splice site	probably null
R1574:Clock	UTSW	5	76,390,679 (GRCm39)	missense	probably damaging	1.00
R1574:Clock	UTSW	5	76,390,679 (GRCm39)	missense	probably damaging	1.00
R1858:Clock	UTSW	5	76,388,756 (GRCm39)	missense	possibly damaging	0.92
R1872:Clock	UTSW	5	76,396,309 (GRCm39)	missense	possibly damaging	0.67
R1905:Clock	UTSW	5	76,414,735 (GRCm39)	splice site	probably benign
R1937:Clock	UTSW	5	76,377,340 (GRCm39)	missense	probably damaging	0.99
R2411:Clock	UTSW	5	76,379,360 (GRCm39)	missense	probably benign	0.08
R2887:Clock	UTSW	5	76,393,120 (GRCm39)	missense	probably damaging	0.99
R3410:Clock	UTSW	5	76,377,401 (GRCm39)	nonsense	probably null
R4514:Clock	UTSW	5	76,378,046 (GRCm39)	missense	probably benign	0.00
R4598:Clock	UTSW	5	76,383,657 (GRCm39)	missense	probably benign	0.00
R4599:Clock	UTSW	5	76,383,657 (GRCm39)	missense	probably benign	0.00
R4796:Clock	UTSW	5	76,413,763 (GRCm39)	missense	probably damaging	1.00
R4973:Clock	UTSW	5	76,402,258 (GRCm39)	missense	possibly damaging	0.62
R5204:Clock	UTSW	5	76,391,017 (GRCm39)	splice site	probably null
R5271:Clock	UTSW	5	76,389,801 (GRCm39)	missense	probably damaging	1.00
R5547:Clock	UTSW	5	76,378,185 (GRCm39)	missense	probably benign	0.02
R5630:Clock	UTSW	5	76,378,185 (GRCm39)	missense	probably benign	0.02
R5631:Clock	UTSW	5	76,378,185 (GRCm39)	missense	probably benign	0.02
R5632:Clock	UTSW	5	76,378,185 (GRCm39)	missense	probably benign	0.02
R5787:Clock	UTSW	5	76,384,898 (GRCm39)	missense	probably damaging	1.00
R6274:Clock	UTSW	5	76,385,000 (GRCm39)	missense	probably benign	0.45
R6578:Clock	UTSW	5	76,364,556 (GRCm39)	missense	unknown
R6622:Clock	UTSW	5	76,389,801 (GRCm39)	missense	probably damaging	1.00
R6760:Clock	UTSW	5	76,374,823 (GRCm39)	missense	unknown
R6793:Clock	UTSW	5	76,384,967 (GRCm39)	frame shift	probably null
R7406:Clock	UTSW	5	76,414,692 (GRCm39)	start codon destroyed	probably null	0.26
R7414:Clock	UTSW	5	76,410,611 (GRCm39)	missense	probably benign	0.00
R7560:Clock	UTSW	5	76,390,738 (GRCm39)	splice site	probably null
R7593:Clock	UTSW	5	76,384,145 (GRCm39)	missense	possibly damaging	0.80
R7640:Clock	UTSW	5	76,396,225 (GRCm39)	missense	possibly damaging	0.71
R7708:Clock	UTSW	5	76,414,256 (GRCm39)	missense	probably benign	0.00
R7713:Clock	UTSW	5	76,393,267 (GRCm39)	critical splice donor site	probably null
R7807:Clock	UTSW	5	76,390,982 (GRCm39)	missense	probably benign	0.01
R8171:Clock	UTSW	5	76,414,261 (GRCm39)	missense	possibly damaging	0.94
R8190:Clock	UTSW	5	76,375,051 (GRCm39)	missense	probably damaging	0.98
R8225:Clock	UTSW	5	76,389,759 (GRCm39)	missense	probably damaging	0.99
R8309:Clock	UTSW	5	76,402,269 (GRCm39)	missense	probably benign	0.07
R8557:Clock	UTSW	5	76,377,217 (GRCm39)	missense	probably damaging	1.00
R8792:Clock	UTSW	5	76,410,574 (GRCm39)	missense	probably damaging	1.00
R8869:Clock	UTSW	5	76,374,889 (GRCm39)	small deletion	probably benign
R8870:Clock	UTSW	5	76,383,632 (GRCm39)	missense	probably benign	0.17
R8980:Clock	UTSW	5	76,402,286 (GRCm39)	missense	probably benign	0.01
R8982:Clock	UTSW	5	76,364,559 (GRCm39)	missense	unknown
R9177:Clock	UTSW	5	76,377,256 (GRCm39)	missense	probably benign	0.00
R9208:Clock	UTSW	5	76,384,871 (GRCm39)	missense	probably benign	0.00
R9213:Clock	UTSW	5	76,393,376 (GRCm39)	missense	possibly damaging	0.94
R9307:Clock	UTSW	5	76,364,671 (GRCm39)	missense	unknown
R9446:Clock	UTSW	5	76,396,288 (GRCm39)	missense	probably benign	0.00
R9516:Clock	UTSW	5	76,377,227 (GRCm39)	missense	possibly damaging	0.85
R9572:Clock	UTSW	5	76,377,338 (GRCm39)	missense	probably benign	0.00
R9630:Clock	UTSW	5	76,393,281 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- CATTATGTTTTAAGTGGGGAAGAGTCC -3'
(R):5'- CTCCTGACCTTTTGAAAAGTAAGC -3'

Sequencing Primer
(F):5'- GAACAGTAGACTTGTCCATC -3'
(R):5'- ACATATTTGAGCCAGGCGTG -3'

Posted On

2016-02-04