Mutagenetix > Incidental Mutation

Incidental Mutation 'R4795:Nol4'

368993

Institutional Source

Beutler Lab

Gene Symbol

Nol4

Ensembl Gene

ENSMUSG00000041923

Gene Name

nucleolar protein 4

Synonyms

1700013J13Rik, LOC383304, 4930568N03Rik

MMRRC Submission

041996-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.452) question?

Stock #

R4795 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

22826238-23174710 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 23054944 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Arginine at position 162 (Q162R)

Ref Sequence

ENSEMBL: ENSMUSP00000130950 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000081423] [ENSMUST00000097651] [ENSMUST00000164186] [ENSMUST00000164893] [ENSMUST00000165323]

AlphaFold

P60954

Predicted Effect

probably damaging
Transcript: ENSMUST00000081423
AA Change: Q89R

PolyPhen 2 Score 0.971 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000080150
Gene: ENSMUSG00000041923
AA Change: Q89R

Domain	Start	End	E-Value	Type
low complexity region	139	155	N/A	INTRINSIC
low complexity region	199	210	N/A	INTRINSIC
low complexity region	309	320	N/A	INTRINSIC
low complexity region	487	506	N/A	INTRINSIC
low complexity region	513	523	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000097651
AA Change: Q162R

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000095256
Gene: ENSMUSG00000041923
AA Change: Q162R

Domain	Start	End	E-Value	Type
low complexity region	212	228	N/A	INTRINSIC
low complexity region	272	283	N/A	INTRINSIC
low complexity region	382	393	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000097652

Predicted Effect

probably damaging
Transcript: ENSMUST00000164186
AA Change: Q162R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000130950
Gene: ENSMUSG00000041923
AA Change: Q162R

Domain	Start	End	E-Value	Type
low complexity region	212	228	N/A	INTRINSIC
low complexity region	272	283	N/A	INTRINSIC
low complexity region	382	393	N/A	INTRINSIC
low complexity region	560	579	N/A	INTRINSIC
low complexity region	586	596	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000164893
AA Change: Q162R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000127870
Gene: ENSMUSG00000041923
AA Change: Q162R

Domain	Start	End	E-Value	Type
low complexity region	212	228	N/A	INTRINSIC
low complexity region	272	283	N/A	INTRINSIC
low complexity region	382	393	N/A	INTRINSIC
low complexity region	496	515	N/A	INTRINSIC
low complexity region	522	532	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000165323
AA Change: Q48R

PolyPhen 2 Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000125860
Gene: ENSMUSG00000041923
AA Change: Q48R

Domain	Start	End	E-Value	Type
low complexity region	95	108	N/A	INTRINSIC

Meta Mutation Damage Score

0.1571

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.7%
20x: 93.7%

Validation Efficiency

98% (123/125)

Allele List at MGI

Other mutations in this stock

Total: 105 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	T	G	3: 121,969,772 (GRCm39)	L2259R	probably damaging	Het
Acd	A	G	8: 106,427,647 (GRCm39)	S2P	possibly damaging	Het
Acsf3	A	G	8: 123,506,896 (GRCm39)	Y63C	possibly damaging	Het
Adam21	T	C	12: 81,607,748 (GRCm39)	I5V	probably benign	Het
Adamts6	C	A	13: 104,580,636 (GRCm39)	S783*	probably null	Het
Adamtsl1	T	C	4: 86,162,006 (GRCm39)		probably null	Het
Adck2	T	A	6: 39,553,327 (GRCm39)	S313T	probably benign	Het
Adgb	A	G	10: 10,233,616 (GRCm39)	I1285T	probably benign	Het
Angptl1	T	A	1: 156,688,153 (GRCm39)	M485K	possibly damaging	Het
Ank3	G	A	10: 69,694,095 (GRCm39)	V289I	probably benign	Het
Atp13a4	A	G	16: 29,308,826 (GRCm39)		probably null	Het
Atp1a1	A	G	3: 101,491,091 (GRCm39)	L648P	probably benign	Het
Atp2a3	A	G	11: 72,863,855 (GRCm39)	I194V	probably benign	Het
Bglap	A	C	3: 88,291,712 (GRCm39)	I4S	unknown	Het
Cacna1b	T	A	2: 24,527,499 (GRCm39)	T1621S	possibly damaging	Het
Ccdc112	T	A	18: 46,420,739 (GRCm39)	Q337L	probably benign	Het
Ccdc121rt3	A	G	5: 112,503,165 (GRCm39)	S180P	possibly damaging	Het
Cd34	T	G	1: 194,633,319 (GRCm39)	S194A	probably damaging	Het
Cdh20	A	G	1: 104,868,989 (GRCm39)	D160G	probably damaging	Het
Clock	T	C	5: 76,413,763 (GRCm39)	K44R	probably damaging	Het
Commd9	A	G	2: 101,729,241 (GRCm39)	N116D	probably benign	Het
Dab2	C	A	15: 6,459,092 (GRCm39)	P335T	probably benign	Het
Epb41l3	T	A	17: 69,555,714 (GRCm39)		probably null	Het
Epha2	A	G	4: 141,049,727 (GRCm39)		probably null	Het
Fam78b	T	C	1: 166,906,216 (GRCm39)	V125A	probably benign	Het
Fars2	A	T	13: 36,721,400 (GRCm39)	E448V	probably damaging	Het
Fkbpl	G	A	17: 34,864,303 (GRCm39)	A24T	probably benign	Het
Glyr1	A	C	16: 4,865,622 (GRCm39)	V44G	probably benign	Het
Gm1527	A	G	3: 28,974,812 (GRCm39)	I542V	possibly damaging	Het
Gm18856	C	A	13: 14,139,793 (GRCm39)		probably benign	Het
Gm44501	A	G	17: 40,889,605 (GRCm39)	K40E	probably benign	Het
Hdhd5	T	C	6: 120,500,407 (GRCm39)	H97R	probably benign	Het
Hmcn1	A	G	1: 150,629,362 (GRCm39)	V965A	probably benign	Het
Hsf5	A	G	11: 87,526,446 (GRCm39)	M373V	probably benign	Het
Igbp1b	C	T	6: 138,634,803 (GRCm39)	E214K	probably benign	Het
Iigp1	T	A	18: 60,522,964 (GRCm39)	F27L	probably benign	Het
Isl1	T	C	13: 116,441,966 (GRCm39)	N89S	probably benign	Het
Itga1	C	A	13: 115,171,921 (GRCm39)	W61C	probably damaging	Het
Itga5	T	C	15: 103,256,187 (GRCm39)	R922G	probably benign	Het
Kbtbd3	G	A	9: 4,331,073 (GRCm39)	W482*	probably null	Het
Kcnq1	A	G	7: 142,736,494 (GRCm39)	T168A	probably benign	Het
Lrch3	A	G	16: 32,826,074 (GRCm39)	N631S	probably damaging	Het
Lrrk1	T	A	7: 65,912,413 (GRCm39)	I1716F	possibly damaging	Het
Ly75	T	C	2: 60,180,284 (GRCm39)	E631G	probably benign	Het
Map4	T	C	9: 109,864,331 (GRCm39)	S519P	probably benign	Het
Mroh2a	A	G	1: 88,186,386 (GRCm39)	S64G	probably benign	Het
Mrtfa	C	T	15: 80,901,234 (GRCm39)	S419N	probably damaging	Het
Muc5b	A	G	7: 141,403,304 (GRCm39)	E755G	unknown	Het
Ncaph2	T	G	15: 89,255,010 (GRCm39)	V478G	probably damaging	Het
Ncbp1	A	G	4: 46,152,967 (GRCm39)	R247G	possibly damaging	Het
Necab1	G	T	4: 15,111,208 (GRCm39)	D73E	possibly damaging	Het
Nedd9	T	C	13: 41,471,376 (GRCm39)	K208E	probably benign	Het
Nfyb	A	T	10: 82,588,202 (GRCm39)		probably benign	Het
Nwd2	G	A	5: 63,962,776 (GRCm39)	D787N	probably benign	Het
Olfr908	T	A	9: 38,427,799 (GRCm39)	M157K	probably damaging	Het
Or10a5	A	T	7: 106,636,121 (GRCm39)	Y253F	probably benign	Het
Or11g7	A	C	14: 50,690,874 (GRCm39)	M122L	probably damaging	Het
Or13a22	A	G	7: 140,072,920 (GRCm39)	D123G	probably damaging	Het
Or5ac23	C	T	16: 59,149,213 (GRCm39)	V220I	probably benign	Het
Or6a2	C	T	7: 106,600,542 (GRCm39)	G175D	probably damaging	Het
Or6e1	A	G	14: 54,520,004 (GRCm39)	M116T	probably damaging	Het
Orai3	T	C	7: 127,373,060 (GRCm39)	V187A	probably benign	Het
Parn	T	C	16: 13,424,066 (GRCm39)	T444A	probably benign	Het
Pcdh11x	A	C	X: 119,309,937 (GRCm39)	N460T	probably damaging	Het
Pcnt	C	T	10: 76,205,858 (GRCm39)	R2516H	probably benign	Het
Pde4d	T	A	13: 110,074,705 (GRCm39)		probably benign	Het
Pdgfra	A	G	5: 75,349,972 (GRCm39)	N952S	probably benign	Het
Pgm2	A	G	5: 64,261,217 (GRCm39)	Y237C	probably damaging	Het
Plcb2	A	G	2: 118,541,605 (GRCm39)	V975A	probably benign	Het
Polk	T	C	13: 96,625,764 (GRCm39)	T347A	probably benign	Het
Ppp6r1	C	T	7: 4,644,053 (GRCm39)	V430M	possibly damaging	Het
Ptges2	C	A	2: 32,286,334 (GRCm39)	C16*	probably null	Het
Relb	A	T	7: 19,353,764 (GRCm39)	I38N	probably damaging	Het
Runx1t1	T	A	4: 13,837,767 (GRCm39)	N51K	probably damaging	Het
Samsn1	A	G	16: 75,680,733 (GRCm39)		probably benign	Het
Scrn1	A	G	6: 54,497,754 (GRCm39)	V279A	possibly damaging	Het
Sec31b	A	G	19: 44,520,185 (GRCm39)	S200P	probably benign	Het
Selp	A	G	1: 163,972,475 (GRCm39)	T705A	probably benign	Het
Slc2a1	G	A	4: 118,989,642 (GRCm39)	R61Q	probably damaging	Het
Slit3	G	A	11: 35,542,647 (GRCm39)		probably null	Het
Smo	T	A	6: 29,755,573 (GRCm39)	V415E	probably damaging	Het
Spag8	C	A	4: 43,652,035 (GRCm39)	V350L	possibly damaging	Het
Tbck	T	G	3: 132,413,559 (GRCm39)	L132R	possibly damaging	Het
Thnsl1	T	A	2: 21,216,856 (GRCm39)	C203*	probably null	Het
Tm9sf2	T	A	14: 122,387,252 (GRCm39)		probably null	Het
Tmem131	A	G	1: 36,880,757 (GRCm39)	V171A	probably damaging	Het
Tmem209	T	C	6: 30,501,954 (GRCm39)	T83A	probably benign	Het
Tmem63a	T	C	1: 180,782,416 (GRCm39)	Y138H	probably damaging	Het
Trim80	A	G	11: 115,338,769 (GRCm39)	Y533C	probably damaging	Het
Trpv2	A	G	11: 62,472,006 (GRCm39)	D66G	possibly damaging	Het
Trrap	T	A	5: 144,769,298 (GRCm39)	I2620N	probably benign	Het
Ttyh3	A	T	5: 140,620,541 (GRCm39)	I232N	probably damaging	Het
Ube2dnl1	G	A	X: 113,815,482 (GRCm39)	C119Y	possibly damaging	Het
Unc13c	T	A	9: 73,839,469 (GRCm39)	S461C	probably damaging	Het
Unc80	T	G	1: 66,567,100 (GRCm39)	I902S	probably damaging	Het
Usp42	C	A	5: 143,709,692 (GRCm39)	G170W	probably damaging	Het
Vldlr	T	C	19: 27,216,252 (GRCm39)		probably null	Het
Ywhab	A	G	2: 163,857,265 (GRCm39)	Y180C	probably damaging	Het
Zan	A	T	5: 137,379,112 (GRCm39)	C5329*	probably null	Het
Zbtb40	C	T	4: 136,725,953 (GRCm39)	M535I	probably benign	Het
Zdhhc1	CGGGGG	CGGGGGG	8: 106,210,376 (GRCm39)		probably null	Het
Zfp318	A	G	17: 46,722,988 (GRCm39)	T1664A	probably benign	Het
Zfp7	T	A	15: 76,775,546 (GRCm39)	C529*	probably null	Het
Zfp768	T	C	7: 126,942,547 (GRCm39)	Q527R	possibly damaging	Het
Zfp975	T	A	7: 42,314,570 (GRCm39)		probably null	Het

Other mutations in Nol4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00339:Nol4	APN	18	22,956,469 (GRCm39)	missense	probably benign	0.15
IGL00677:Nol4	APN	18	23,054,924 (GRCm39)	missense	probably damaging	1.00
IGL01153:Nol4	APN	18	22,902,850 (GRCm39)	missense	probably damaging	1.00
IGL01400:Nol4	APN	18	22,956,555 (GRCm39)	missense	probably damaging	0.99
IGL02006:Nol4	APN	18	23,054,975 (GRCm39)	missense	probably damaging	1.00
IGL02342:Nol4	APN	18	22,903,926 (GRCm39)	splice site	probably benign
IGL02501:Nol4	APN	18	22,956,398 (GRCm39)	missense	probably damaging	1.00
PIT4378001:Nol4	UTSW	18	23,172,933 (GRCm39)	missense	probably damaging	1.00
R0096:Nol4	UTSW	18	23,054,915 (GRCm39)	missense	possibly damaging	0.95
R0097:Nol4	UTSW	18	22,852,198 (GRCm39)	missense	probably benign	0.23
R0097:Nol4	UTSW	18	22,852,198 (GRCm39)	missense	probably benign	0.23
R1257:Nol4	UTSW	18	22,903,738 (GRCm39)	missense	probably damaging	1.00
R1793:Nol4	UTSW	18	22,902,878 (GRCm39)	missense	probably damaging	1.00
R2101:Nol4	UTSW	18	22,956,466 (GRCm39)	missense	probably damaging	1.00
R2357:Nol4	UTSW	18	23,172,967 (GRCm39)	missense	probably benign	0.01
R2414:Nol4	UTSW	18	22,956,629 (GRCm39)	critical splice acceptor site	probably null
R2427:Nol4	UTSW	18	22,983,755 (GRCm39)	intron	probably benign
R3713:Nol4	UTSW	18	23,172,994 (GRCm39)	missense	probably damaging	1.00
R3734:Nol4	UTSW	18	22,903,921 (GRCm39)	splice site	probably benign
R3803:Nol4	UTSW	18	22,828,012 (GRCm39)	missense	probably damaging	1.00
R4458:Nol4	UTSW	18	22,885,052 (GRCm39)	missense	probably damaging	0.99
R4736:Nol4	UTSW	18	22,852,050 (GRCm39)	missense	probably damaging	1.00
R4774:Nol4	UTSW	18	23,045,683 (GRCm39)	missense	probably damaging	0.96
R5245:Nol4	UTSW	18	22,828,179 (GRCm39)	makesense	probably null
R5980:Nol4	UTSW	18	23,085,258 (GRCm39)	missense	probably damaging	0.97
R6372:Nol4	UTSW	18	23,171,613 (GRCm39)	critical splice donor site	probably null
R6485:Nol4	UTSW	18	22,903,850 (GRCm39)	missense	probably damaging	1.00
R6614:Nol4	UTSW	18	23,053,913 (GRCm39)	missense	probably damaging	1.00
R6809:Nol4	UTSW	18	23,053,882 (GRCm39)	missense	probably damaging	1.00
R6877:Nol4	UTSW	18	22,852,186 (GRCm39)	missense	probably benign	0.06
R7269:Nol4	UTSW	18	23,172,846 (GRCm39)	missense	probably benign
R7310:Nol4	UTSW	18	22,903,801 (GRCm39)	missense
R7720:Nol4	UTSW	18	23,173,080 (GRCm39)	missense	probably benign	0.16
R7753:Nol4	UTSW	18	23,171,659 (GRCm39)	start codon destroyed	probably benign	0.15
R7897:Nol4	UTSW	18	22,956,400 (GRCm39)	missense
R7974:Nol4	UTSW	18	22,852,082 (GRCm39)	nonsense	probably null
R8297:Nol4	UTSW	18	23,173,069 (GRCm39)	missense	probably damaging	0.99
R8303:Nol4	UTSW	18	23,173,231 (GRCm39)	unclassified	probably benign
R8466:Nol4	UTSW	18	23,171,638 (GRCm39)	missense	probably benign	0.03
R8985:Nol4	UTSW	18	23,085,294 (GRCm39)	missense	probably damaging	1.00
R9064:Nol4	UTSW	18	22,903,850 (GRCm39)	missense
R9296:Nol4	UTSW	18	22,956,388 (GRCm39)	missense
R9442:Nol4	UTSW	18	22,902,899 (GRCm39)	missense	probably damaging	1.00
R9456:Nol4	UTSW	18	23,172,897 (GRCm39)	missense	probably benign	0.41
R9469:Nol4	UTSW	18	23,085,318 (GRCm39)	missense	probably damaging	0.99
R9478:Nol4	UTSW	18	23,053,934 (GRCm39)	missense	probably damaging	1.00
R9708:Nol4	UTSW	18	22,828,053 (GRCm39)	missense	probably damaging	1.00
Z1088:Nol4	UTSW	18	23,054,959 (GRCm39)	missense	probably damaging	1.00
Z1177:Nol4	UTSW	18	22,902,897 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- GACCCTGAATCAATGTCAGTGG -3'
(R):5'- TGTGCTTCCCGCCATAATGG -3'

Sequencing Primer
(F):5'- CAATGTCAGTGGGCGTTCAAATCC -3'
(R):5'- TTCCCGCCATAATGGAATAACGTG -3'

Posted On

2016-02-04