Mutagenetix > Incidental Mutation

Incidental Mutation 'R0420:Nck2'

36958

Institutional Source

Beutler Lab

Gene Symbol

Nck2

Ensembl Gene

ENSMUSG00000066877

Gene Name

non-catalytic region of tyrosine kinase adaptor protein 2

Synonyms

4833426I10Rik, Grb4, NCKbeta

MMRRC Submission

038622-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0420 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

43444579-43570515 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 43554118 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 162 (S162P)

Ref Sequence

ENSEMBL: ENSMUSP00000083611 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000086421] [ENSMUST00000202540]

AlphaFold

O55033

Predicted Effect

probably damaging
Transcript: ENSMUST00000086421
AA Change: S162P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000083611
Gene: ENSMUSG00000066877
AA Change: S162P

Domain	Start	End	E-Value	Type
SH3	5	60	7.06e-17	SMART
SH3	114	169	8.56e-16	SMART
SH3	198	256	2.09e-19	SMART
SH2	283	365	2.86e-28	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000114744

SMART Domains

Protein: ENSMUSP00000110392
Gene: ENSMUSG00000066877

Domain	Start	End	E-Value	Type
SH3	5	60	7.06e-17	SMART
SH3	114	169	8.56e-16	SMART
SH3	198	256	2.09e-19	SMART
SH2	283	365	2.86e-28	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000202540

SMART Domains

Protein: ENSMUSP00000144224
Gene: ENSMUSG00000066877

Domain	Start	End	E-Value	Type
SH3	5	60	4.3e-19	SMART
PDB:2CUB\|A	106	142	4e-13	PDB
Blast:SH3	114	142	3e-11	BLAST

Meta Mutation Damage Score

0.9485

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.1%
20x: 95.2%

Validation Efficiency

100% (76/76)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the NCK family of adaptor proteins. The protein contains three SH3 domains and one SH2 domain. The protein has no known catalytic function but has been shown to bind and recruit various proteins involved in the regulation of receptor protein tyrosine kinases. It is through these regulatory activities that this protein is believed to be involved in cytoskeletal reorganization. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for disruption of this gene display no abnormal phenotype. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930415O20Rik	A	G	15: 98,571,094	S17G	probably benign	Het
Abcb4	T	C	5: 8,941,050	V870A	probably benign	Het
Adam6b	A	T	12: 113,489,994	M144L	probably benign	Het
Adrb2	T	A	18: 62,179,539	I72L	possibly damaging	Het
Ankrd53	A	T	6: 83,763,692	H99L	probably damaging	Het
Ap4e1	C	T	2: 127,049,360	T17M	probably damaging	Het
Arnt	T	A	3: 95,470,394		probably benign	Het
Atp1a3	C	T	7: 24,980,627	G884E	probably benign	Het
Atp6v1b1	T	C	6: 83,752,844		probably benign	Het
Atp8a2	G	T	14: 59,773,744	T971K	probably damaging	Het
BC048562	A	T	9: 108,445,966	T167S	probably benign	Het
Brd9	A	G	13: 73,955,473	M491V	probably benign	Het
Btnl10	A	T	11: 58,923,451	D319V	probably damaging	Het
Cadps	T	A	14: 12,491,800	R783S	probably damaging	Het
Ccdc149	A	G	5: 52,400,239		probably benign	Het
Ccm2l	A	T	2: 153,070,862	D107V	probably null	Het
Cep192	A	G	18: 67,813,893	E213G	possibly damaging	Het
Cyp2c37	A	C	19: 39,995,794	N242T	probably benign	Het
Dnah17	A	G	11: 118,039,939	V3750A	probably damaging	Het
Ehbp1	T	A	11: 22,151,836	I231L	probably benign	Het
Emilin3	A	G	2: 160,910,879		probably benign	Het
Eya4	T	C	10: 23,155,963	N254S	possibly damaging	Het
Fam184b	A	G	5: 45,584,512	S126P	probably damaging	Het
Fancd2	T	C	6: 113,536,979	L108P	probably damaging	Het
Fgf12	A	T	16: 28,162,529	M145K	possibly damaging	Het
Gabbr1	A	G	17: 37,046,762	N23S	possibly damaging	Het
Ggt1	T	A	10: 75,576,213		probably benign	Het
Gm1966	T	A	7: 106,603,883	L51F	probably damaging	Het
Gm6434	T	A	7: 25,882,361		noncoding transcript	Het
Gm6614	T	G	6: 141,985,477		probably benign	Het
Grik4	A	T	9: 42,622,096	L376*	probably null	Het
Gzf1	A	G	2: 148,683,833	T75A	probably benign	Het
Hcn1	T	C	13: 117,975,375	I625T	unknown	Het
Hhat	C	T	1: 192,552,934		probably null	Het
Ifit1bl1	T	C	19: 34,594,514	E181G	probably damaging	Het
Kif21a	T	C	15: 90,968,054		probably benign	Het
Lrrc45	A	C	11: 120,715,219	S118R	probably damaging	Het
Mcm9	T	C	10: 53,548,527	I656V	probably benign	Het
Ms4a5	A	G	19: 11,283,654	L47S	probably damaging	Het
Mynn	A	T	3: 30,607,459	N230I	probably benign	Het
Nfat5	T	C	8: 107,367,461	F259S	probably damaging	Het
Obox1	T	G	7: 15,556,253	S174A	possibly damaging	Het
Ociad1	T	A	5: 73,313,429		probably null	Het
Pgbd1	A	T	13: 21,423,166	V286E	possibly damaging	Het
Phlpp2	T	C	8: 109,939,935	V1032A	probably damaging	Het
Ppm1e	C	T	11: 87,240,614	A318T	probably damaging	Het
Prex1	T	A	2: 166,589,571	D757V	probably benign	Het
Ptpdc1	C	A	13: 48,589,119		probably null	Het
Rbbp5	T	G	1: 132,493,844	I94R	possibly damaging	Het
Rnpc3	A	G	3: 113,621,869	V173A	probably benign	Het
Sgsm1	A	T	5: 113,263,759	N700K	probably benign	Het
Sox14	T	A	9: 99,875,122	H188L	probably damaging	Het
Supt5	T	A	7: 28,317,329		probably benign	Het
Synpo	A	G	18: 60,602,418	S819P	probably damaging	Het
Tenm2	A	G	11: 36,207,124		probably benign	Het
Tenm4	T	C	7: 96,873,766	V1468A	possibly damaging	Het
Tiam2	A	G	17: 3,502,918	N83S	probably benign	Het
Tle6	T	C	10: 81,595,311		probably benign	Het
Tm2d2	T	G	8: 25,018,114	N91K	probably damaging	Het
Tmem132d	T	G	5: 127,864,646	Q463H	probably benign	Het
Tmf1	A	G	6: 97,176,141	S324P	probably damaging	Het
Tnc	T	C	4: 64,000,159	T1172A	probably benign	Het
Usp17lb	A	T	7: 104,840,539	C393S	probably benign	Het
Usp42	G	A	5: 143,714,861	L1136F	probably damaging	Het
Vmn2r92	T	G	17: 18,168,921	M499R	probably benign	Het
Vps54	T	A	11: 21,311,071		probably benign	Het
Wdr6	C	T	9: 108,573,101	R1076H	probably benign	Het
Wdr72	T	A	9: 74,210,757	M917K	possibly damaging	Het
Wee2	T	C	6: 40,456,995	V281A	probably benign	Het
Zc3h6	A	G	2: 129,014,827	D609G	probably benign	Het
Zfp345	G	A	2: 150,473,243	H125Y	possibly damaging	Het
Zhx2	A	G	15: 57,821,840	K202E	probably damaging	Het
Zic2	CCCACCACCACCATCACCACCACCACC	CCCACCATCACCACCACCACC	14: 122,476,364		probably benign	Het

Other mutations in Nck2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
wake	UTSW	1	43554260	missense	probably benign
R0503:Nck2	UTSW	1	43533568	start codon destroyed	probably null	0.96
R0538:Nck2	UTSW	1	43569144	splice site	probably benign
R1080:Nck2	UTSW	1	43533581	missense	probably benign	0.00
R2509:Nck2	UTSW	1	43554233	missense	probably damaging	1.00
R4029:Nck2	UTSW	1	43554091	missense	probably benign
R4923:Nck2	UTSW	1	43461071	intron	probably benign
R5425:Nck2	UTSW	1	43554392	missense	probably benign	0.05
R6175:Nck2	UTSW	1	43533569	start codon destroyed	probably null	0.96
R6683:Nck2	UTSW	1	43569178	missense	probably benign
R6859:Nck2	UTSW	1	43554351	missense	probably benign	0.24
R7514:Nck2	UTSW	1	43569221	missense	probably benign	0.00
R8021:Nck2	UTSW	1	43554260	missense	probably benign
R8278:Nck2	UTSW	1	43554580	missense	probably damaging	1.00
R9004:Nck2	UTSW	1	43554350	missense
R9063:Nck2	UTSW	1	43554343	missense	possibly damaging	0.91
R9559:Nck2	UTSW	1	43554047	missense	probably damaging	1.00
R9746:Nck2	UTSW	1	43533732	nonsense	probably null
Z1088:Nck2	UTSW	1	43554383	missense	possibly damaging	0.55
Z1177:Nck2	UTSW	1	43554356	missense	probably benign	0.02

Predicted Primers

PCR Primer
(F):5'- ACATCCCAGCCTTTGTCAAGTTCG -3'
(R):5'- GTCACGTTGCCATAGTACCACTCC -3'

Sequencing Primer
(F):5'- CTTTGTCAAGTTCGCCTACG -3'
(R):5'- GAACAACCACGTAGTTTTTGGG -3'

Posted On

2013-05-09