Mutagenetix > Incidental Mutation

Incidental Mutation 'R4815:Tox'

369709

Institutional Source

Beutler Lab

Gene Symbol

Tox

Ensembl Gene

ENSMUSG00000041272

Gene Name

thymocyte selection-associated high mobility group box

Synonyms

1700007F02Rik

MMRRC Submission

042433-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4815 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

6686353-6991557 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 6823033 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 95 (S95P)

Ref Sequence

ENSEMBL: ENSMUSP00000037966 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039987]

AlphaFold

Q66JW3

PDB Structure

Solution structure of the HMG_box domain of thymus high mobility group box protein TOX from mouse [SOLUTION NMR]

Predicted Effect

probably benign
Transcript: ENSMUST00000039987
AA Change: S95P

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000037966
Gene: ENSMUSG00000041272
AA Change: S95P

Domain	Start	End	E-Value	Type
low complexity region	7	19	N/A	INTRINSIC
low complexity region	204	220	N/A	INTRINSIC
HMG	260	330	1.11e-19	SMART
low complexity region	416	439	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147657

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150082

Meta Mutation Damage Score

0.0623

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.6%
20x: 93.5%

Validation Efficiency

96% (76/79)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains a HMG box DNA binding domain. HMG boxes are found in many eukaryotic proteins involved in chromatin assembly, transcription and replication. This protein may function to regulate T-cell development.[provided by RefSeq, Apr 2009]
PHENOTYPE: Mice homozygous for a knock-out allele have a severe block in thymic positive selection leading to loss of CD4 T lineage cells, and display decreased NK cell numbers, severely reduced numbers of lymphoid tissue inducer cells, absence of all peripheral lymph nodes, and loss of Peyer's patches. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alpk2	A	T	18: 65,483,026 (GRCm39)	N327K	probably damaging	Het
Ank2	T	C	3: 126,730,410 (GRCm39)	T675A	probably benign	Het
Arap3	T	C	18: 38,106,296 (GRCm39)	T1516A	probably benign	Het
Asb18	A	T	1: 89,942,147 (GRCm39)	N51K	probably damaging	Het
C7	A	G	15: 5,088,887 (GRCm39)	V18A	probably benign	Het
Caap1	A	G	4: 94,389,497 (GRCm39)	V279A	probably benign	Het
Cacnb2	A	G	2: 14,879,591 (GRCm39)	D21G	probably damaging	Het
Ccdc171	T	C	4: 83,713,458 (GRCm39)	S1166P	probably damaging	Het
Chgb	A	T	2: 132,635,219 (GRCm39)	H387L	probably benign	Het
Chp2	G	A	7: 121,820,123 (GRCm39)	R91Q	probably damaging	Het
Chuk	C	A	19: 44,065,686 (GRCm39)	G703*	probably null	Het
Clmn	T	C	12: 104,751,825 (GRCm39)	D210G	probably damaging	Het
Cyp4f18	A	G	8: 72,749,839 (GRCm39)	V270A	possibly damaging	Het
Dgcr2	A	G	16: 17,676,483 (GRCm39)		probably benign	Het
Diaph1	A	T	18: 38,028,256 (GRCm39)	V411D	unknown	Het
Dkk2	C	T	3: 131,879,546 (GRCm39)	A75V	probably benign	Het
Dnase1l1	C	T	X: 73,320,644 (GRCm39)		probably null	Het
Dnase2a	T	C	8: 85,636,506 (GRCm39)	V187A	probably benign	Het
Dusp19	A	G	2: 80,461,289 (GRCm39)	M193V	probably benign	Het
Ear-ps2	G	A	14: 44,284,517 (GRCm39)		noncoding transcript	Het
Golgb1	A	T	16: 36,733,477 (GRCm39)	Q908L	possibly damaging	Het
Hsp90aa1	T	C	12: 110,661,660 (GRCm39)	M119V	possibly damaging	Het
Ice2	C	T	9: 69,314,400 (GRCm39)	R50C	probably damaging	Het
Ifi208	A	T	1: 173,510,403 (GRCm39)	E186V	probably damaging	Het
Ift122	A	G	6: 115,858,517 (GRCm39)	K166E	possibly damaging	Het
Jcad	T	A	18: 4,675,223 (GRCm39)	L995Q	possibly damaging	Het
Kcnc4	A	T	3: 107,365,582 (GRCm39)	C209S	probably benign	Het
Kmt2a	G	A	9: 44,732,553 (GRCm39)		probably benign	Het
Lrriq1	T	A	10: 102,980,739 (GRCm39)	L1465F	probably benign	Het
Map3k7	C	A	4: 31,988,592 (GRCm39)	T247N	probably damaging	Het
Mctp2	T	G	7: 71,909,097 (GRCm39)	Q72P	possibly damaging	Het
Miga1	T	C	3: 151,996,443 (GRCm39)	Y335C	probably benign	Het
Ms4a14	A	T	19: 11,291,641 (GRCm39)	N19K	probably benign	Het
Mylk	G	A	16: 34,715,295 (GRCm39)	R541Q	probably damaging	Het
Nav3	T	C	10: 109,659,413 (GRCm39)	T735A	probably benign	Het
Nlgn1	T	A	3: 25,490,194 (GRCm39)	H511L	probably damaging	Het
Nlrp4a	A	T	7: 26,150,233 (GRCm39)	E613D	probably benign	Het
Nuf2	A	G	1: 169,338,037 (GRCm39)	S247P	probably damaging	Het
Ocstamp	A	G	2: 165,240,102 (GRCm39)	V28A	probably benign	Het
Odf2	A	C	2: 29,792,252 (GRCm39)	E155D	possibly damaging	Het
Odr4	A	G	1: 150,250,597 (GRCm39)	C294R	probably damaging	Het
Or2ag13	G	A	7: 106,473,444 (GRCm39)	P3S	probably benign	Het
Or8s16	T	C	15: 98,210,561 (GRCm39)	N290S	probably damaging	Het
Otud7a	T	C	7: 63,379,658 (GRCm39)		probably null	Het
Pacsin2	A	T	15: 83,269,260 (GRCm39)	D11E	probably damaging	Het
Pcdhga5	G	A	18: 37,828,247 (GRCm39)	V232I	probably damaging	Het
Plcb3	A	G	19: 6,940,352 (GRCm39)	I439T	possibly damaging	Het
Rag1	A	G	2: 101,473,861 (GRCm39)	V427A	probably damaging	Het
Ranbp10	A	T	8: 106,552,757 (GRCm39)	C128*	probably null	Het
Rbm8a2	A	G	1: 175,806,024 (GRCm39)	V151A	probably damaging	Het
S100pbp	A	G	4: 129,044,726 (GRCm39)		probably benign	Het
Serpinb5	G	T	1: 106,800,069 (GRCm39)	L86F	probably damaging	Het
Sgo2b	T	C	8: 64,384,448 (GRCm39)	I183V	probably benign	Het
Slc25a25	A	T	2: 32,310,422 (GRCm39)	D112E	probably damaging	Het
Slc30a5	C	T	13: 100,950,218 (GRCm39)	V103I	probably damaging	Het
Slc9a2	A	T	1: 40,758,009 (GRCm39)	I183F	probably benign	Het
Srrm4	T	A	5: 116,613,249 (GRCm39)	K141N	unknown	Het
Tbc1d20	T	C	2: 152,153,909 (GRCm39)		probably benign	Het
Tdpoz6	C	T	3: 93,599,593 (GRCm39)	V259M	probably benign	Het
Tep1	A	G	14: 51,078,759 (GRCm39)	L1498P	probably damaging	Het
Tgfbi	T	C	13: 56,779,933 (GRCm39)	M494T	probably benign	Het
Tpr	G	A	1: 150,274,359 (GRCm39)	V163I	probably benign	Het
Trpm7	A	G	2: 126,700,412 (GRCm39)	S2P	probably damaging	Het
Ttn	A	G	2: 76,546,429 (GRCm39)	M32328T	probably damaging	Het
Vps39	A	T	2: 120,169,040 (GRCm39)	N289K	probably benign	Het
Xdh	C	T	17: 74,213,210 (GRCm39)	A847T	probably damaging	Het
Xndc1	G	A	7: 101,722,523 (GRCm39)	G63R	probably null	Het
Ythdc2	A	G	18: 45,018,307 (GRCm39)	S1330G	probably benign	Het
Zc3h14	C	G	12: 98,719,107 (GRCm39)	D157E	probably damaging	Het
Zc3h7b	A	T	15: 81,677,864 (GRCm39)	K949N	probably damaging	Het
Zp3r	A	T	1: 130,526,649 (GRCm39)	Y185N	probably damaging	Het

Other mutations in Tox

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01359:Tox	APN	4	6,697,583 (GRCm39)	missense	probably damaging	0.99
IGL01481:Tox	APN	4	6,842,396 (GRCm39)	missense	probably damaging	0.99
IGL01600:Tox	APN	4	6,697,585 (GRCm39)	missense	probably damaging	0.98
IGL01616:Tox	APN	4	6,688,430 (GRCm39)	missense	probably damaging	0.99
IGL02160:Tox	APN	4	6,711,537 (GRCm39)	missense	probably damaging	0.99
IGL02390:Tox	APN	4	6,697,534 (GRCm39)	missense	possibly damaging	0.90
IGL03243:Tox	APN	4	6,697,597 (GRCm39)	missense	possibly damaging	0.76
R0008:Tox	UTSW	4	6,842,411 (GRCm39)	missense	probably benign	0.41
R0008:Tox	UTSW	4	6,842,411 (GRCm39)	missense	probably benign	0.41
R1147:Tox	UTSW	4	6,823,055 (GRCm39)	missense	possibly damaging	0.74
R1147:Tox	UTSW	4	6,823,055 (GRCm39)	missense	possibly damaging	0.74
R1159:Tox	UTSW	4	6,697,600 (GRCm39)	missense	probably benign	0.37
R1903:Tox	UTSW	4	6,688,948 (GRCm39)	missense	probably damaging	0.99
R1961:Tox	UTSW	4	6,688,886 (GRCm39)	missense	probably damaging	0.96
R2484:Tox	UTSW	4	6,688,886 (GRCm39)	missense	probably damaging	0.96
R3692:Tox	UTSW	4	6,697,535 (GRCm39)	missense	probably benign	0.05
R4072:Tox	UTSW	4	6,842,396 (GRCm39)	missense	probably damaging	0.99
R4635:Tox	UTSW	4	6,990,501 (GRCm39)	utr 5 prime	probably benign
R5099:Tox	UTSW	4	6,688,958 (GRCm39)	missense	probably benign	0.28
R5421:Tox	UTSW	4	6,842,409 (GRCm39)	missense	possibly damaging	0.79
R5537:Tox	UTSW	4	6,697,510 (GRCm39)	missense	probably damaging	1.00
R5630:Tox	UTSW	4	6,688,835 (GRCm39)	small insertion	probably benign
R5883:Tox	UTSW	4	6,697,444 (GRCm39)	missense	probably benign
R6351:Tox	UTSW	4	6,741,536 (GRCm39)	missense	probably benign	0.11
R6351:Tox	UTSW	4	6,697,439 (GRCm39)	missense	probably benign
R6448:Tox	UTSW	4	6,822,975 (GRCm39)	missense	probably benign	0.08
R6934:Tox	UTSW	4	6,697,635 (GRCm39)	missense	probably damaging	0.98
R7513:Tox	UTSW	4	6,741,507 (GRCm39)	missense	probably benign
R7915:Tox	UTSW	4	6,822,949 (GRCm39)	missense	probably benign
R8223:Tox	UTSW	4	6,842,408 (GRCm39)	missense	probably damaging	1.00
R8766:Tox	UTSW	4	6,823,047 (GRCm39)	missense	probably damaging	0.99
R9702:Tox	UTSW	4	6,697,418 (GRCm39)	missense	probably benign	0.02
Z1088:Tox	UTSW	4	6,688,450 (GRCm39)	missense	probably damaging	1.00
Z1176:Tox	UTSW	4	6,990,629 (GRCm39)	start gained	probably benign

Predicted Primers

PCR Primer
(F):5'- TCAGATTGTTGAATAGAGCTGACCC -3'
(R):5'- TCTATTAGGCCGCTGTGTCC -3'

Sequencing Primer
(F):5'- GAATAGAGCTGACCCTTGTTTTTC -3'
(R):5'- TCCCGGGGTTTGAACAACTAAG -3'

Posted On

2016-02-04