Mutagenetix > Incidental Mutation

Incidental Mutation 'R4820:Wdr59'

370144

Institutional Source

Beutler Lab

Gene Symbol

Wdr59

Ensembl Gene

ENSMUSG00000031959

Gene Name

WD repeat domain 59

Synonyms

5430401O09Rik

MMRRC Submission

042436-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4820 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

112175429-112248724 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 112207446 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 476 (N476S)

Ref Sequence

ENSEMBL: ENSMUSP00000043671 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034437] [ENSMUST00000038193] [ENSMUST00000211981]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000034437
AA Change: N476S

PolyPhen 2 Score 0.194 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000034437
Gene: ENSMUSG00000031959
AA Change: N476S

Domain	Start	End	E-Value	Type
WD40	41	91	1.37e2	SMART
WD40	94	134	9.52e-6	SMART
WD40	138	176	4.46e-1	SMART
WD40	180	220	2.59e-7	SMART
WD40	271	315	8.59e-1	SMART
RWD	393	494	4.13e-14	SMART
low complexity region	620	632	N/A	INTRINSIC
low complexity region	802	813	N/A	INTRINSIC
Blast:RING	941	980	3e-10	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000038193
AA Change: N476S

PolyPhen 2 Score 0.194 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000043671
Gene: ENSMUSG00000031959
AA Change: N476S

Domain	Start	End	E-Value	Type
WD40	41	91	1.37e2	SMART
WD40	94	134	9.52e-6	SMART
WD40	138	176	4.46e-1	SMART
WD40	180	220	2.59e-7	SMART
WD40	271	315	8.59e-1	SMART
RWD	393	494	4.13e-14	SMART
low complexity region	803	814	N/A	INTRINSIC
Pfam:Zn_ribbon_17	937	992	2e-14	PFAM
Pfam:zinc_ribbon_16	949	990	1.6e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000211981
AA Change: N476S

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.0%
3x: 98.3%
10x: 96.5%
20x: 92.9%

Validation Efficiency

96% (104/108)

Allele List at MGI

Other mutations in this stock

Total: 95 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930488N24Rik	T	C	17: 14,326,481 (GRCm39)		noncoding transcript	Het
5730455P16Rik	A	T	11: 80,266,346 (GRCm39)	S132T	possibly damaging	Het
Aadacl3	T	A	4: 144,184,527 (GRCm39)	H77L	probably damaging	Het
Actr5	T	A	2: 158,467,426 (GRCm39)	V122D	probably damaging	Het
Adamts7	A	G	9: 90,071,739 (GRCm39)	D678G	possibly damaging	Het
Alpk1	T	A	3: 127,464,708 (GRCm39)	D1190V	probably benign	Het
Apbb1ip	A	T	2: 22,765,265 (GRCm39)	N649Y	unknown	Het
Atp6v0a1	A	G	11: 100,933,776 (GRCm39)	I522V	probably benign	Het
Brd10	T	C	19: 29,695,809 (GRCm39)	N1228S	possibly damaging	Het
Cars1	T	C	7: 143,124,301 (GRCm39)	D375G	probably damaging	Het
Catspere1	A	T	1: 177,687,441 (GRCm39)		noncoding transcript	Het
Ccdc87	A	G	19: 4,890,579 (GRCm39)	D357G	probably damaging	Het
Cd101	A	T	3: 100,929,471 (GRCm39)	S8T	probably benign	Het
Cfap65	C	T	1: 74,966,791 (GRCm39)	A299T	probably benign	Het
Cic	T	C	7: 24,971,157 (GRCm39)	V296A	possibly damaging	Het
Col7a1	T	A	9: 108,797,675 (GRCm39)	S1686T	possibly damaging	Het
Ctbp2	A	C	7: 132,615,423 (GRCm39)	L504R	probably damaging	Het
Cttnbp2nl	T	C	3: 104,918,640 (GRCm39)	K67E	probably benign	Het
Cyp2c50	C	T	19: 40,102,024 (GRCm39)	P480S	probably damaging	Het
Dcdc5	A	C	2: 106,166,420 (GRCm39)		noncoding transcript	Het
Defb2	G	T	8: 22,333,317 (GRCm39)	E31*	probably null	Het
Dhrs1	T	A	14: 55,977,083 (GRCm39)	N244I	possibly damaging	Het
Dop1b	A	G	16: 93,589,978 (GRCm39)	I134V	probably benign	Het
Eif1ad11	A	T	12: 87,994,158 (GRCm39)	I129F	unknown	Het
Etl4	A	G	2: 20,811,496 (GRCm39)	D1193G	possibly damaging	Het
Ezh1	A	C	11: 101,094,594 (GRCm39)	S399R	probably damaging	Het
Fam161a	T	C	11: 22,970,076 (GRCm39)	S26P	probably damaging	Het
Fcgbp	C	A	7: 27,813,383 (GRCm39)	S2306Y	probably damaging	Het
Fras1	T	C	5: 96,876,512 (GRCm39)	I2415T	probably benign	Het
Gas2l3	A	G	10: 89,252,907 (GRCm39)	L246P	probably damaging	Het
Gdf15	C	T	8: 71,082,246 (GRCm39)	V287M	probably damaging	Het
Gm7742	T	C	17: 21,420,235 (GRCm39)		noncoding transcript	Het
Grin2d	T	C	7: 45,507,363 (GRCm39)	D446G	probably damaging	Het
Hemk1	A	G	9: 107,205,385 (GRCm39)	F107L	probably benign	Het
Hmgcr	C	T	13: 96,796,700 (GRCm39)	G197S	probably damaging	Het
Ift52	G	A	2: 162,873,108 (GRCm39)	G207D	probably benign	Het
Il17re	A	G	6: 113,442,816 (GRCm39)	T275A	probably benign	Het
Iqcf3	T	C	9: 106,430,788 (GRCm39)		probably benign	Het
Kcna1	A	G	6: 126,619,099 (GRCm39)	I407T	probably damaging	Het
Kcnrg	T	A	14: 61,845,386 (GRCm39)	M142K	probably benign	Het
Lhx9	C	A	1: 138,766,105 (GRCm39)	V237L	probably benign	Het
Lipo3	A	C	19: 33,560,497 (GRCm39)	I56S	probably damaging	Het
Loxhd1	C	G	18: 77,472,663 (GRCm39)	P1060R	probably damaging	Het
Map2k4	A	C	11: 65,587,201 (GRCm39)		probably benign	Het
Methig1	A	G	15: 100,251,416 (GRCm39)	K109R	possibly damaging	Het
Mmrn1	G	A	6: 60,950,027 (GRCm39)	V326I	probably benign	Het
Myo15a	G	A	11: 60,367,741 (GRCm39)	R167H	probably damaging	Het
Ncoa7	G	A	10: 30,524,472 (GRCm39)	T142M	probably damaging	Het
Nfkb2	C	A	19: 46,296,493 (GRCm39)	Q254K	probably damaging	Het
Nherf1	A	G	11: 115,070,918 (GRCm39)	E290G	probably benign	Het
Nol6	G	T	4: 41,121,508 (GRCm39)	P278Q	probably damaging	Het
Nptxr	T	A	15: 79,677,027 (GRCm39)	D285V	probably damaging	Het
Oosp3	T	C	19: 11,688,997 (GRCm39)	W82R	probably damaging	Het
Or6b3	A	T	1: 92,438,812 (GRCm39)	*313K	probably null	Het
Or6n1	A	G	1: 173,916,742 (GRCm39)	I45M	possibly damaging	Het
Pa2g4	G	T	10: 128,395,199 (GRCm39)	T322K	probably damaging	Het
Parp16	C	A	9: 65,145,175 (GRCm39)	F291L	probably damaging	Het
Pdzd9	A	T	7: 120,267,619 (GRCm39)	D65E	probably damaging	Het
Pgap3	A	G	11: 98,281,300 (GRCm39)	W238R	probably damaging	Het
Pgf	G	A	12: 85,218,538 (GRCm39)	H67Y	probably benign	Het
Pik3cb	T	C	9: 98,955,679 (GRCm39)	T413A	probably benign	Het
Plcxd2	A	T	16: 45,800,700 (GRCm39)	C175S	probably benign	Het
Pou2f1	A	T	1: 165,719,517 (GRCm39)		probably benign	Het
Ppfia1	T	G	7: 144,052,106 (GRCm39)	N846T	probably benign	Het
Ppid	T	A	3: 79,502,504 (GRCm39)		probably null	Het
Prkcq	G	A	2: 11,231,797 (GRCm39)		probably null	Het
Ptgds	T	C	2: 25,359,058 (GRCm39)	K66E	probably benign	Het
Ptpmt1	A	G	2: 90,748,283 (GRCm39)		noncoding transcript	Het
Rab3il1	G	A	19: 10,004,034 (GRCm39)	G51D	probably benign	Het
Rdx	T	C	9: 51,974,891 (GRCm39)	V9A	probably damaging	Het
Rpl7l1	T	C	17: 47,089,014 (GRCm39)	N239S	probably benign	Het
Rrbp1	C	A	2: 143,806,685 (GRCm39)	A978S	possibly damaging	Het
Rsf1	GCGGCGGCG	GCGGCGGCGCCGGCGGCG	7: 97,229,126 (GRCm39)		probably benign	Het
Scn3a	A	T	2: 65,291,622 (GRCm39)	I1708N	probably damaging	Het
Serinc1	A	G	10: 57,401,466 (GRCm39)	I109T	possibly damaging	Het
Shroom1	G	A	11: 53,355,966 (GRCm39)	V339I	probably benign	Het
Slc30a8	T	A	15: 52,169,880 (GRCm39)	C36S	probably benign	Het
Slco1b2	A	G	6: 141,631,158 (GRCm39)	I597M	probably benign	Het
Snx27	A	G	3: 94,427,518 (GRCm39)	F228S	probably damaging	Het
Spata31f1a	T	A	4: 42,851,815 (GRCm39)	I114F	probably damaging	Het
Speer4e2	G	T	5: 15,026,225 (GRCm39)	T144K	probably benign	Het
Stim1	T	A	7: 102,064,571 (GRCm39)	F214I	probably damaging	Het
Svep1	T	C	4: 58,082,664 (GRCm39)	T1987A	probably benign	Het
Tamm41	A	G	6: 115,002,378 (GRCm39)	I18T	possibly damaging	Het
Tmem150b	T	A	7: 4,726,871 (GRCm39)	D79V	probably damaging	Het
Tmem167	T	A	13: 90,252,548 (GRCm39)	I68N	probably benign	Het
Traf3	A	G	12: 111,227,204 (GRCm39)	E339G	possibly damaging	Het
Tspan12	G	A	6: 21,795,660 (GRCm39)	P177S	probably damaging	Het
Ttn	A	G	2: 76,783,562 (GRCm39)	I810T	probably benign	Het
Ulk1	T	C	5: 110,939,996 (GRCm39)	T407A	probably benign	Het
Uroc1	G	A	6: 90,334,600 (GRCm39)		probably null	Het
Vmn2r-ps69	T	C	7: 84,959,584 (GRCm39)		noncoding transcript	Het
Zfp472	A	G	17: 33,196,416 (GRCm39)	M164V	probably benign	Het
Zfp608	T	C	18: 55,120,756 (GRCm39)	N277S	probably benign	Het
Zfp831	T	C	2: 174,547,097 (GRCm39)	C1427R	possibly damaging	Het

Other mutations in Wdr59

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00737:Wdr59	APN	8	112,185,368 (GRCm39)	missense	probably damaging	0.98
IGL01330:Wdr59	APN	8	112,208,565 (GRCm39)	missense	possibly damaging	0.87
IGL01413:Wdr59	APN	8	112,227,706 (GRCm39)	missense	probably benign	0.23
IGL02306:Wdr59	APN	8	112,219,365 (GRCm39)	missense	probably damaging	1.00
IGL03027:Wdr59	APN	8	112,188,824 (GRCm39)	missense	probably damaging	1.00
IGL03057:Wdr59	APN	8	112,202,750 (GRCm39)	missense	probably damaging	1.00
IGL03204:Wdr59	APN	8	112,212,002 (GRCm39)	missense	probably benign	0.05
electron	UTSW	8	112,185,270 (GRCm39)	missense	probably benign	0.00
photon	UTSW	8	112,187,445 (GRCm39)	missense	probably benign	0.00
R0056:Wdr59	UTSW	8	112,207,239 (GRCm39)	splice site	probably benign
R0096:Wdr59	UTSW	8	112,231,005 (GRCm39)	missense	probably damaging	1.00
R0096:Wdr59	UTSW	8	112,231,005 (GRCm39)	missense	probably damaging	1.00
R0440:Wdr59	UTSW	8	112,207,172 (GRCm39)	small deletion	probably benign
R0452:Wdr59	UTSW	8	112,248,604 (GRCm39)	missense	possibly damaging	0.87
R0472:Wdr59	UTSW	8	112,213,629 (GRCm39)	critical splice acceptor site	probably null
R0501:Wdr59	UTSW	8	112,185,579 (GRCm39)	missense	possibly damaging	0.90
R0526:Wdr59	UTSW	8	112,207,172 (GRCm39)	small deletion	probably benign
R0534:Wdr59	UTSW	8	112,207,172 (GRCm39)	small deletion	probably benign
R0601:Wdr59	UTSW	8	112,207,172 (GRCm39)	small deletion	probably benign
R1144:Wdr59	UTSW	8	112,213,576 (GRCm39)	missense	probably benign	0.09
R1415:Wdr59	UTSW	8	112,225,228 (GRCm39)	missense	probably damaging	1.00
R1571:Wdr59	UTSW	8	112,177,682 (GRCm39)	missense	probably damaging	0.98
R1661:Wdr59	UTSW	8	112,205,994 (GRCm39)	missense	probably damaging	1.00
R1665:Wdr59	UTSW	8	112,205,994 (GRCm39)	missense	probably damaging	1.00
R1839:Wdr59	UTSW	8	112,211,972 (GRCm39)	missense	probably benign
R1856:Wdr59	UTSW	8	112,202,813 (GRCm39)	missense	probably damaging	1.00
R1872:Wdr59	UTSW	8	112,185,649 (GRCm39)	missense	probably damaging	1.00
R1921:Wdr59	UTSW	8	112,213,582 (GRCm39)	nonsense	probably null
R1965:Wdr59	UTSW	8	112,177,709 (GRCm39)	missense	probably damaging	1.00
R1966:Wdr59	UTSW	8	112,177,535 (GRCm39)	missense	possibly damaging	0.92
R1977:Wdr59	UTSW	8	112,185,270 (GRCm39)	missense	probably benign	0.00
R2019:Wdr59	UTSW	8	112,193,425 (GRCm39)	missense	probably damaging	1.00
R4245:Wdr59	UTSW	8	112,216,996 (GRCm39)	missense	possibly damaging	0.63
R4471:Wdr59	UTSW	8	112,193,419 (GRCm39)	critical splice donor site	probably null
R5198:Wdr59	UTSW	8	112,208,620 (GRCm39)	missense	probably benign	0.00
R5540:Wdr59	UTSW	8	112,211,816 (GRCm39)	missense	possibly damaging	0.84
R5571:Wdr59	UTSW	8	112,192,463 (GRCm39)	missense	probably damaging	1.00
R6166:Wdr59	UTSW	8	112,199,293 (GRCm39)	missense	probably damaging	1.00
R6732:Wdr59	UTSW	8	112,227,684 (GRCm39)	missense	probably damaging	1.00
R6767:Wdr59	UTSW	8	112,202,733 (GRCm39)	missense	probably damaging	1.00
R6823:Wdr59	UTSW	8	112,185,672 (GRCm39)	missense	possibly damaging	0.95
R6841:Wdr59	UTSW	8	112,223,512 (GRCm39)	missense	probably damaging	1.00
R6888:Wdr59	UTSW	8	112,177,675 (GRCm39)	missense	probably benign	0.00
R6974:Wdr59	UTSW	8	112,187,420 (GRCm39)	missense	possibly damaging	0.86
R6982:Wdr59	UTSW	8	112,187,445 (GRCm39)	missense	probably benign	0.00
R7066:Wdr59	UTSW	8	112,192,477 (GRCm39)	missense	probably benign	0.07
R7154:Wdr59	UTSW	8	112,185,367 (GRCm39)	missense
R7176:Wdr59	UTSW	8	112,219,388 (GRCm39)	missense
R7286:Wdr59	UTSW	8	112,192,494 (GRCm39)	missense
R7332:Wdr59	UTSW	8	112,220,986 (GRCm39)	missense
R7537:Wdr59	UTSW	8	112,217,001 (GRCm39)	missense
R7614:Wdr59	UTSW	8	112,219,394 (GRCm39)	missense
R7758:Wdr59	UTSW	8	112,207,117 (GRCm39)	missense
R7800:Wdr59	UTSW	8	112,248,570 (GRCm39)	missense
R7861:Wdr59	UTSW	8	112,220,912 (GRCm39)	missense
R8137:Wdr59	UTSW	8	112,212,011 (GRCm39)	missense
R8726:Wdr59	UTSW	8	112,223,466 (GRCm39)	missense
R8942:Wdr59	UTSW	8	112,211,808 (GRCm39)	missense	probably benign
R9318:Wdr59	UTSW	8	112,177,700 (GRCm39)	missense
X0026:Wdr59	UTSW	8	112,205,972 (GRCm39)	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- ACCCACAGTGTATCTCTAAGTTGG -3'
(R):5'- TGTGTAAGGCTCTGGAAACC -3'

Sequencing Primer
(F):5'- CACAGTGTATCTCTAAGTTGGATTAC -3'
(R):5'- GTGTAAGGCTCTGGAAACCTCTTC -3'

Posted On

2016-02-04