Incidental Mutation 'R4821:Farp2'
ID 370192
Institutional Source Beutler Lab
Gene Symbol Farp2
Ensembl Gene ENSMUSG00000034066
Gene Name FERM, RhoGEF and pleckstrin domain protein 2
Synonyms Fir, D030026M03Rik
MMRRC Submission 042437-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R4821 (G1)
Quality Score 225
Status Validated
Chromosome 1
Chromosomal Location 93439826-93549698 bp(+) (GRCm39)
Type of Mutation splice site (4 bp from exon)
DNA Base Change (assembly) A to G at 93502192 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000113790 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000120301] [ENSMUST00000122402]
AlphaFold Q91VS8
Predicted Effect probably null
Transcript: ENSMUST00000120301
SMART Domains Protein: ENSMUSP00000112725
Gene: ENSMUSG00000034066

DomainStartEndE-ValueType
B41 40 234 1.48e-66 SMART
FERM_C 238 328 3.29e-35 SMART
FA 332 378 1.13e-15 SMART
low complexity region 409 421 N/A INTRINSIC
low complexity region 440 459 N/A INTRINSIC
low complexity region 462 473 N/A INTRINSIC
low complexity region 478 492 N/A INTRINSIC
RhoGEF 542 728 1.57e-56 SMART
PH 759 857 1.45e-19 SMART
low complexity region 879 890 N/A INTRINSIC
PH 931 1029 2.62e-17 SMART
Predicted Effect probably null
Transcript: ENSMUST00000122402
SMART Domains Protein: ENSMUSP00000113790
Gene: ENSMUSG00000034066

DomainStartEndE-ValueType
B41 40 234 1.48e-66 SMART
FERM_C 238 328 3.29e-35 SMART
FA 332 378 1.13e-15 SMART
low complexity region 409 421 N/A INTRINSIC
low complexity region 440 459 N/A INTRINSIC
low complexity region 463 475 N/A INTRINSIC
low complexity region 565 576 N/A INTRINSIC
low complexity region 690 700 N/A INTRINSIC
low complexity region 734 753 N/A INTRINSIC
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.3%
  • 10x: 96.3%
  • 20x: 92.5%
Validation Efficiency 100% (79/79)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit slight increase in bone volumetrics and reduced osteoclast differentiation from BMDMs cultured with M-CSF and RANKL [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 70 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4921539E11Rik T C 4: 103,092,871 (GRCm39) K150R probably damaging Het
Aak1 T C 6: 86,827,171 (GRCm39) V46A probably damaging Het
Abcb9 T C 5: 124,228,212 (GRCm39) T10A probably benign Het
Acaca A G 11: 84,185,813 (GRCm39) D116G possibly damaging Het
Adam33 G A 2: 130,903,115 (GRCm39) P43L probably benign Het
Adamtsl2 T A 2: 26,988,604 (GRCm39) probably null Het
Akap13 A G 7: 75,327,255 (GRCm39) probably benign Het
Art1 T A 7: 101,756,385 (GRCm39) L192Q probably damaging Het
Baalc A G 15: 38,796,575 (GRCm39) probably benign Het
Baz2a A G 10: 127,946,978 (GRCm39) E164G probably damaging Het
Bcs1l A G 1: 74,631,144 (GRCm39) I391V probably benign Het
Cacna1c T C 6: 118,673,386 (GRCm39) T497A probably damaging Het
Cap2 C A 13: 46,763,586 (GRCm39) T164N probably damaging Het
Ccdc57 A G 11: 120,751,225 (GRCm39) probably null Het
Ccdc88c T C 12: 100,904,338 (GRCm39) N1120S probably benign Het
Cfap210 T C 2: 69,612,452 (GRCm39) E96G possibly damaging Het
Chd7 T A 4: 8,844,706 (GRCm39) V1605D probably damaging Het
Col12a1 A T 9: 79,622,622 (GRCm39) probably benign Het
Commd3 T C 2: 18,677,339 (GRCm39) S22P probably benign Het
Cpd T C 11: 76,737,063 (GRCm39) I244V probably benign Het
Cpeb2 C A 5: 43,390,817 (GRCm39) probably benign Het
Cyp2c65 A G 19: 39,060,635 (GRCm39) D165G probably damaging Het
Ddx1 T C 12: 13,289,148 (GRCm39) Y152C probably damaging Het
Dennd4a G A 9: 64,804,531 (GRCm39) C1290Y possibly damaging Het
Ebf4 G A 2: 130,148,965 (GRCm39) M232I probably benign Het
Frk T C 10: 34,360,233 (GRCm39) V78A probably benign Het
Gm5799 A G 14: 43,782,098 (GRCm39) D90G probably damaging Het
Gpr45 C G 1: 43,069,613 (GRCm39) probably benign Het
Hfm1 C T 5: 107,002,606 (GRCm39) probably null Het
Igkv4-57-1 T A 6: 69,521,387 (GRCm39) D105V probably damaging Het
Impdh2-ps A G 8: 100,757,995 (GRCm39) noncoding transcript Het
Kctd4 G A 14: 76,200,217 (GRCm39) V63I probably benign Het
Lcn6 T A 2: 25,570,822 (GRCm39) L137M probably damaging Het
Lonrf1 T C 8: 36,687,126 (GRCm39) N737D probably benign Het
Mcu C T 10: 59,303,511 (GRCm39) V109M probably damaging Het
Mecom C A 3: 30,039,500 (GRCm39) K186N probably damaging Het
Muc4 T C 16: 32,753,802 (GRCm38) I1226T probably benign Het
Mybpc1 T C 10: 88,384,727 (GRCm39) D533G probably damaging Het
Nae1 A C 8: 105,246,416 (GRCm39) C294G probably damaging Het
Ncapg2 T G 12: 116,379,077 (GRCm39) H190Q probably damaging Het
Nkx2-2 A T 2: 147,027,763 (GRCm39) L59Q possibly damaging Het
Nrxn3 C T 12: 90,171,483 (GRCm39) T295I probably damaging Het
Obscn C T 11: 58,897,652 (GRCm39) probably benign Het
Obscn A T 11: 58,931,293 (GRCm39) M5781K probably damaging Het
Or11g24 A G 14: 50,662,206 (GRCm39) T77A possibly damaging Het
Or4k39 T C 2: 111,239,570 (GRCm39) noncoding transcript Het
Or4z4 T A 19: 12,076,110 (GRCm39) M298L probably benign Het
Pcdhb6 C A 18: 37,467,381 (GRCm39) P101T probably damaging Het
Pot1b A G 17: 55,979,885 (GRCm39) S324P possibly damaging Het
Potefam1 T C 2: 111,034,490 (GRCm39) probably null Het
Ppcdc C T 9: 57,342,194 (GRCm39) V43I probably benign Het
Prr13 A T 15: 102,369,120 (GRCm39) probably benign Het
Rab10os T A 12: 3,287,322 (GRCm39) noncoding transcript Het
Rabgap1 T C 2: 37,422,531 (GRCm39) S595P probably damaging Het
Rap1gap T C 4: 137,439,440 (GRCm39) S126P probably damaging Het
Rgs6 A T 12: 83,114,185 (GRCm39) probably null Het
Slc5a6 T A 5: 31,194,228 (GRCm39) K610* probably null Het
Sun5 C T 2: 153,711,386 (GRCm39) V27I probably benign Het
Tmco5b T C 2: 113,120,102 (GRCm39) I126T probably benign Het
Tmed7 G A 18: 46,726,480 (GRCm39) Q92* probably null Het
Trav7d-2 A G 14: 52,921,885 (GRCm39) D98G probably benign Het
Trbv16 T A 6: 41,128,936 (GRCm39) L40Q probably damaging Het
Ush2a T C 1: 188,485,848 (GRCm39) V2986A probably benign Het
Usp33 T C 3: 152,064,310 (GRCm39) V58A probably benign Het
Vmn2r94 T A 17: 18,477,293 (GRCm39) M373L probably benign Het
Ywhaq T C 12: 21,467,512 (GRCm39) probably benign Het
Zbbx G A 3: 74,989,054 (GRCm39) H345Y possibly damaging Het
Zfp346 G T 13: 55,261,626 (GRCm39) probably benign Het
Zfp616 C T 11: 73,975,033 (GRCm39) A434V probably benign Het
Zfp992 C T 4: 146,551,976 (GRCm39) H566Y probably damaging Het
Other mutations in Farp2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00598:Farp2 APN 1 93,531,103 (GRCm39) missense probably benign 0.00
IGL00953:Farp2 APN 1 93,488,896 (GRCm39) missense possibly damaging 0.92
IGL00961:Farp2 APN 1 93,549,035 (GRCm39) missense possibly damaging 0.81
IGL00970:Farp2 APN 1 93,488,049 (GRCm39) missense probably benign 0.00
IGL01377:Farp2 APN 1 93,531,181 (GRCm39) missense possibly damaging 0.74
IGL01408:Farp2 APN 1 93,546,702 (GRCm39) missense probably benign 0.19
IGL01919:Farp2 APN 1 93,504,155 (GRCm39) missense probably damaging 1.00
IGL01985:Farp2 APN 1 93,535,324 (GRCm39) missense probably damaging 1.00
IGL02375:Farp2 APN 1 93,504,185 (GRCm39) missense probably damaging 1.00
IGL02392:Farp2 APN 1 93,505,372 (GRCm39) missense probably damaging 1.00
IGL02815:Farp2 APN 1 93,488,007 (GRCm39) missense probably damaging 1.00
IGL03003:Farp2 APN 1 93,495,140 (GRCm39) missense probably damaging 1.00
IGL03074:Farp2 APN 1 93,488,049 (GRCm39) missense probably benign 0.00
IGL03223:Farp2 APN 1 93,545,324 (GRCm39) nonsense probably null
IGL03379:Farp2 APN 1 93,535,160 (GRCm39) missense probably benign 0.08
IGL02802:Farp2 UTSW 1 93,456,332 (GRCm39) missense probably damaging 1.00
PIT4468001:Farp2 UTSW 1 93,456,499 (GRCm39) nonsense probably null
PIT4494001:Farp2 UTSW 1 93,545,316 (GRCm39) missense probably damaging 1.00
R0207:Farp2 UTSW 1 93,496,809 (GRCm39) missense probably damaging 0.96
R0521:Farp2 UTSW 1 93,504,543 (GRCm39) critical splice acceptor site probably null
R0594:Farp2 UTSW 1 93,504,222 (GRCm39) missense probably damaging 1.00
R1386:Farp2 UTSW 1 93,547,873 (GRCm39) splice site probably null
R1522:Farp2 UTSW 1 93,546,275 (GRCm39) missense possibly damaging 0.79
R1589:Farp2 UTSW 1 93,507,582 (GRCm39) missense probably damaging 1.00
R1651:Farp2 UTSW 1 93,531,191 (GRCm39) critical splice donor site probably null
R1695:Farp2 UTSW 1 93,488,047 (GRCm39) missense probably damaging 0.97
R1833:Farp2 UTSW 1 93,504,086 (GRCm39) splice site probably benign
R1915:Farp2 UTSW 1 93,456,424 (GRCm39) missense probably benign 0.16
R2241:Farp2 UTSW 1 93,507,625 (GRCm39) missense probably benign 0.31
R4505:Farp2 UTSW 1 93,546,732 (GRCm39) missense probably damaging 1.00
R4518:Farp2 UTSW 1 93,548,363 (GRCm39) missense probably benign 0.04
R4551:Farp2 UTSW 1 93,546,314 (GRCm39) missense possibly damaging 0.92
R4723:Farp2 UTSW 1 93,508,621 (GRCm39) missense probably benign 0.07
R4861:Farp2 UTSW 1 93,533,141 (GRCm39) missense probably damaging 1.00
R4861:Farp2 UTSW 1 93,533,141 (GRCm39) missense probably damaging 1.00
R5221:Farp2 UTSW 1 93,504,140 (GRCm39) missense probably damaging 0.99
R5625:Farp2 UTSW 1 93,456,470 (GRCm39) missense probably damaging 1.00
R5663:Farp2 UTSW 1 93,497,735 (GRCm39) missense probably damaging 1.00
R5935:Farp2 UTSW 1 93,548,367 (GRCm39) critical splice donor site probably null
R6593:Farp2 UTSW 1 93,497,662 (GRCm39) missense possibly damaging 0.48
R6853:Farp2 UTSW 1 93,497,738 (GRCm39) missense probably damaging 1.00
R7001:Farp2 UTSW 1 93,547,952 (GRCm39) missense possibly damaging 0.94
R7001:Farp2 UTSW 1 93,547,906 (GRCm39) missense possibly damaging 0.94
R7133:Farp2 UTSW 1 93,548,956 (GRCm39) missense probably damaging 1.00
R7134:Farp2 UTSW 1 93,531,181 (GRCm39) missense probably benign 0.04
R7184:Farp2 UTSW 1 93,531,137 (GRCm39) missense probably damaging 1.00
R7219:Farp2 UTSW 1 93,488,040 (GRCm39) missense probably damaging 0.97
R7234:Farp2 UTSW 1 93,507,841 (GRCm39) missense possibly damaging 0.94
R7426:Farp2 UTSW 1 93,548,950 (GRCm39) missense possibly damaging 0.55
R7477:Farp2 UTSW 1 93,508,750 (GRCm39) splice site probably null
R7503:Farp2 UTSW 1 93,495,219 (GRCm39) missense probably benign 0.03
R7921:Farp2 UTSW 1 93,495,237 (GRCm39) critical splice donor site probably null
R7939:Farp2 UTSW 1 93,487,983 (GRCm39) missense probably damaging 1.00
R7985:Farp2 UTSW 1 93,504,246 (GRCm39) missense probably damaging 1.00
R8162:Farp2 UTSW 1 93,548,325 (GRCm39) missense probably damaging 1.00
R8207:Farp2 UTSW 1 93,548,965 (GRCm39) missense probably benign 0.00
R8292:Farp2 UTSW 1 93,456,350 (GRCm39) missense probably damaging 1.00
R8348:Farp2 UTSW 1 93,504,614 (GRCm39) critical splice donor site probably null
R8495:Farp2 UTSW 1 93,531,139 (GRCm39) missense possibly damaging 0.74
R9106:Farp2 UTSW 1 93,488,910 (GRCm39) critical splice donor site probably null
Z1176:Farp2 UTSW 1 93,508,189 (GRCm39) missense probably benign 0.00
Z1176:Farp2 UTSW 1 93,508,183 (GRCm39) missense probably benign
Z1176:Farp2 UTSW 1 93,507,858 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- CATGTCACTTGACTTGCTAGGTTG -3'
(R):5'- AGCCTGCTGAATGGGAAAC -3'

Sequencing Primer
(F):5'- GGTTGCTTTTAAGGATGTAACCTACC -3'
(R):5'- AGAGCCTGATAGCTTACTCCAGAG -3'
Posted On 2016-02-04