Incidental Mutation 'R4805:Arhgef7'
| ID |
370627 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Arhgef7
|
| Ensembl Gene |
ENSMUSG00000031511 |
| Gene Name |
Rho guanine nucleotide exchange factor |
| Synonyms |
betaPix-c, betaPix, Pak interacting exchange factor, p85SPR, betaPix-b, cool-1, Cool, PIX |
| MMRRC Submission |
041999-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R4805 (G1)
|
| Quality Score |
166 |
|
Status
|
Validated
|
| Chromosome |
8 |
| Chromosomal Location |
11778053-11885219 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to A
at 11881552 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glutamic Acid to Lysine
at position 565
(E565K)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000106529
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000074856]
[ENSMUST00000098938]
[ENSMUST00000110904]
[ENSMUST00000110909]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000074856
AA Change: E575K
PolyPhen 2
Score 0.659 (Sensitivity: 0.86; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000074399
Gene: ENSMUSG00000031511
AA Change: E575K
| Domain | Start | End | E-Value | Type |
|---|
|
SH3
|
9 |
64 |
9.97e-26 |
SMART |
|
RhoGEF
|
97 |
272 |
8.36e-43 |
SMART |
|
PH
|
302 |
402 |
3.77e-9 |
SMART |
|
low complexity region
|
443 |
457 |
N/A |
INTRINSIC |
|
low complexity region
|
473 |
490 |
N/A |
INTRINSIC |
|
low complexity region
|
503 |
515 |
N/A |
INTRINSIC |
|
PDB:3L4F|C
|
587 |
646 |
2e-32 |
PDB |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000098938
AA Change: E634K
PolyPhen 2
Score 0.946 (Sensitivity: 0.80; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000096538
Gene: ENSMUSG00000031511
AA Change: E634K
| Domain | Start | End | E-Value | Type |
|---|
|
SH3
|
9 |
64 |
9.97e-26 |
SMART |
|
RhoGEF
|
97 |
272 |
8.36e-43 |
SMART |
|
PH
|
302 |
402 |
3.77e-9 |
SMART |
|
low complexity region
|
443 |
457 |
N/A |
INTRINSIC |
|
low complexity region
|
473 |
490 |
N/A |
INTRINSIC |
|
low complexity region
|
503 |
515 |
N/A |
INTRINSIC |
|
low complexity region
|
569 |
600 |
N/A |
INTRINSIC |
|
PDB:3L4F|C
|
646 |
705 |
2e-32 |
PDB |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000110904
AA Change: E565K
PolyPhen 2
Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
|
| SMART Domains |
Protein: ENSMUSP00000106529
Gene: ENSMUSG00000031511
AA Change: E565K
| Domain | Start | End | E-Value | Type |
|---|
|
SH3
|
9 |
64 |
9.97e-26 |
SMART |
|
RhoGEF
|
97 |
272 |
8.36e-43 |
SMART |
|
PH
|
302 |
402 |
3.77e-9 |
SMART |
|
low complexity region
|
428 |
440 |
N/A |
INTRINSIC |
|
low complexity region
|
494 |
525 |
N/A |
INTRINSIC |
|
PDB:3L4F|C
|
571 |
630 |
2e-32 |
PDB |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000110909
|
| SMART Domains |
Protein: ENSMUSP00000106534
Gene: ENSMUSG00000031511
| Domain | Start | End | E-Value | Type |
|---|
|
CH
|
3 |
107 |
7.28e-13 |
SMART |
|
Pfam:RhoGEF67_u1
|
117 |
163 |
8e-21 |
PFAM |
|
SH3
|
166 |
221 |
9.97e-26 |
SMART |
|
RhoGEF
|
254 |
429 |
8.36e-43 |
SMART |
|
PH
|
459 |
559 |
3.77e-9 |
SMART |
|
Pfam:RhoGEF67_u2
|
611 |
711 |
2.3e-53 |
PFAM |
|
low complexity region
|
726 |
757 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000151225
|
| Meta Mutation Damage Score |
0.1648 |
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.3%
- 10x: 96.4%
- 20x: 92.7%
|
| Validation Efficiency |
99% (69/70) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that belongs to a family of cytoplasmic proteins that activate the Ras-like family of Rho proteins by exchanging bound GDP for GTP. It forms a complex with the small GTP binding protein Rac1 and recruits Rac1 to membrane ruffles and to focal adhesions. Multiple alternatively spliced transcript variants encoding different isoforms have been observed for this gene. [provided by RefSeq, Mar 2016]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 56 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4930407I10Rik |
T |
A |
15: 81,950,628 (GRCm39) |
Y1508* |
probably null |
Het |
| 4931414P19Rik |
T |
C |
14: 54,832,911 (GRCm39) |
E88G |
probably benign |
Het |
| Acaa1b |
A |
G |
9: 118,986,014 (GRCm39) |
S17P |
probably benign |
Het |
| Arl6ip1 |
AAAATAAATAAATAAATAAATAAATA |
AAAATAAATAAATAAATAAATAAATAAATA |
7: 117,721,122 (GRCm39) |
|
probably benign |
Het |
| Bpnt1 |
T |
A |
1: 185,077,504 (GRCm39) |
|
probably null |
Het |
| Ccnt1 |
C |
T |
15: 98,442,189 (GRCm39) |
V360I |
probably benign |
Het |
| Chd4 |
T |
C |
6: 125,105,908 (GRCm39) |
S1829P |
possibly damaging |
Het |
| Dennd1b |
A |
T |
1: 138,981,122 (GRCm39) |
N112I |
probably damaging |
Het |
| Fat2 |
A |
T |
11: 55,174,805 (GRCm39) |
D1969E |
probably benign |
Het |
| Flywch1 |
A |
C |
17: 23,979,591 (GRCm39) |
D394E |
probably benign |
Het |
| Gal3st4 |
T |
A |
5: 138,263,733 (GRCm39) |
|
probably null |
Het |
| Gm14403 |
T |
C |
2: 177,200,492 (GRCm39) |
L146P |
probably damaging |
Het |
| Gm5283 |
G |
T |
3: 17,285,123 (GRCm39) |
|
noncoding transcript |
Het |
| Gpr161 |
T |
A |
1: 165,134,029 (GRCm39) |
L97Q |
probably damaging |
Het |
| Gstm2 |
A |
T |
3: 107,892,411 (GRCm39) |
M105K |
possibly damaging |
Het |
| Hecw2 |
A |
G |
1: 53,880,018 (GRCm39) |
Y1264H |
probably damaging |
Het |
| Ifi206 |
T |
A |
1: 173,308,952 (GRCm39) |
Q348L |
possibly damaging |
Het |
| Ighv1-83 |
A |
T |
12: 115,927,489 (GRCm39) |
M87K |
possibly damaging |
Het |
| Ighv2-7 |
A |
T |
12: 113,771,154 (GRCm39) |
S44T |
probably damaging |
Het |
| Ipo7 |
T |
A |
7: 109,650,691 (GRCm39) |
N884K |
probably benign |
Het |
| Itga2b |
T |
C |
11: 102,358,692 (GRCm39) |
N75S |
probably benign |
Het |
| Krt20 |
A |
G |
11: 99,319,811 (GRCm39) |
V431A |
unknown |
Het |
| Krt24 |
A |
T |
11: 99,174,452 (GRCm39) |
I205N |
possibly damaging |
Het |
| Lmo2 |
T |
C |
2: 103,811,407 (GRCm39) |
Y147H |
probably damaging |
Het |
| Lrrc31 |
A |
T |
3: 30,745,446 (GRCm39) |
L67* |
probably null |
Het |
| Lrrc37a |
A |
G |
11: 103,395,135 (GRCm39) |
F97L |
probably benign |
Het |
| Mapkap1 |
G |
A |
2: 34,487,434 (GRCm39) |
|
probably null |
Het |
| Mgat4d |
T |
G |
8: 84,084,787 (GRCm39) |
|
probably null |
Het |
| Mrgprb3 |
C |
T |
7: 48,293,054 (GRCm39) |
V166I |
probably benign |
Het |
| Myh11 |
T |
A |
16: 14,052,329 (GRCm39) |
Q379L |
possibly damaging |
Het |
| Myh7 |
T |
C |
14: 55,222,590 (GRCm39) |
S782G |
probably benign |
Het |
| Nobox |
T |
C |
6: 43,282,053 (GRCm39) |
D340G |
probably damaging |
Het |
| Ntn4 |
C |
T |
10: 93,480,362 (GRCm39) |
R29C |
probably damaging |
Het |
| Or2t29 |
G |
A |
11: 58,433,396 (GRCm39) |
T315I |
probably benign |
Het |
| Or5b101 |
T |
A |
19: 13,005,661 (GRCm39) |
I11F |
probably benign |
Het |
| Pikfyve |
T |
A |
1: 65,307,959 (GRCm39) |
I1845N |
probably damaging |
Het |
| Pramel15 |
A |
G |
4: 144,103,590 (GRCm39) |
Y179H |
probably benign |
Het |
| Rad21l |
T |
G |
2: 151,509,927 (GRCm39) |
H58P |
probably damaging |
Het |
| Scnn1g |
T |
C |
7: 121,345,825 (GRCm39) |
L316S |
probably damaging |
Het |
| Serpina5 |
G |
A |
12: 104,068,460 (GRCm39) |
V174I |
probably damaging |
Het |
| Shank1 |
T |
C |
7: 43,993,135 (GRCm39) |
S788P |
unknown |
Het |
| Shisal1 |
T |
A |
15: 84,301,397 (GRCm39) |
H82L |
probably damaging |
Het |
| Snap47 |
A |
G |
11: 59,319,343 (GRCm39) |
V265A |
possibly damaging |
Het |
| Steap3 |
T |
A |
1: 120,171,616 (GRCm39) |
H163L |
probably benign |
Het |
| Sycp2 |
T |
C |
2: 178,035,754 (GRCm39) |
|
probably benign |
Het |
| Tet2 |
A |
G |
3: 133,173,076 (GRCm39) |
F1729L |
probably benign |
Het |
| Thsd7b |
T |
C |
1: 130,116,276 (GRCm39) |
V1343A |
probably benign |
Het |
| Thumpd2 |
G |
A |
17: 81,334,130 (GRCm39) |
T486I |
probably damaging |
Het |
| Ttc41 |
G |
T |
10: 86,565,662 (GRCm39) |
M405I |
possibly damaging |
Het |
| Ttn |
T |
C |
2: 76,577,873 (GRCm39) |
D24340G |
probably damaging |
Het |
| Vmn1r10 |
T |
G |
6: 57,090,602 (GRCm39) |
F65V |
possibly damaging |
Het |
| Vmn2r118 |
G |
T |
17: 55,899,581 (GRCm39) |
D774E |
probably damaging |
Het |
| Vmn2r13 |
C |
T |
5: 109,304,331 (GRCm39) |
C700Y |
probably damaging |
Het |
| Wsb1 |
A |
C |
11: 79,131,217 (GRCm39) |
M393R |
possibly damaging |
Het |
| Zmat3 |
A |
G |
3: 32,397,504 (GRCm39) |
Y214H |
probably benign |
Het |
| Zswim3 |
C |
T |
2: 164,662,099 (GRCm39) |
T193I |
possibly damaging |
Het |
|
| Other mutations in Arhgef7 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01020:Arhgef7
|
APN |
8 |
11,832,540 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01481:Arhgef7
|
APN |
8 |
11,865,256 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02376:Arhgef7
|
APN |
8 |
11,867,735 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02812:Arhgef7
|
APN |
8 |
11,831,245 (GRCm39) |
unclassified |
probably benign |
|
|
IGL02813:Arhgef7
|
APN |
8 |
11,850,767 (GRCm39) |
unclassified |
probably benign |
|
|
IGL02864:Arhgef7
|
APN |
8 |
11,865,247 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
Mental_fitness
|
UTSW |
8 |
11,850,811 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0139:Arhgef7
|
UTSW |
8 |
11,850,503 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0157:Arhgef7
|
UTSW |
8 |
11,835,812 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0332:Arhgef7
|
UTSW |
8 |
11,874,701 (GRCm39) |
nonsense |
probably null |
|
|
R0448:Arhgef7
|
UTSW |
8 |
11,869,659 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R0973:Arhgef7
|
UTSW |
8 |
11,869,659 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R1491:Arhgef7
|
UTSW |
8 |
11,869,733 (GRCm39) |
critical splice donor site |
probably null |
|
|
R1566:Arhgef7
|
UTSW |
8 |
11,832,620 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R1601:Arhgef7
|
UTSW |
8 |
11,832,638 (GRCm39) |
splice site |
probably null |
|
|
R1716:Arhgef7
|
UTSW |
8 |
11,858,713 (GRCm39) |
splice site |
probably null |
|
|
R1717:Arhgef7
|
UTSW |
8 |
11,858,713 (GRCm39) |
splice site |
probably null |
|
|
R1717:Arhgef7
|
UTSW |
8 |
11,858,712 (GRCm39) |
unclassified |
probably benign |
|
|
R1719:Arhgef7
|
UTSW |
8 |
11,858,713 (GRCm39) |
splice site |
probably null |
|
|
R1901:Arhgef7
|
UTSW |
8 |
11,858,713 (GRCm39) |
splice site |
probably null |
|
|
R1902:Arhgef7
|
UTSW |
8 |
11,858,713 (GRCm39) |
splice site |
probably null |
|
|
R1933:Arhgef7
|
UTSW |
8 |
11,858,713 (GRCm39) |
splice site |
probably null |
|
|
R1934:Arhgef7
|
UTSW |
8 |
11,858,713 (GRCm39) |
splice site |
probably null |
|
|
R1956:Arhgef7
|
UTSW |
8 |
11,855,266 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2122:Arhgef7
|
UTSW |
8 |
11,778,256 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R2273:Arhgef7
|
UTSW |
8 |
11,865,010 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R2275:Arhgef7
|
UTSW |
8 |
11,865,010 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R2306:Arhgef7
|
UTSW |
8 |
11,862,680 (GRCm39) |
nonsense |
probably null |
|
|
R2375:Arhgef7
|
UTSW |
8 |
11,864,995 (GRCm39) |
missense |
probably benign |
0.08 |
|
R4530:Arhgef7
|
UTSW |
8 |
11,850,802 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
R5204:Arhgef7
|
UTSW |
8 |
11,850,775 (GRCm39) |
nonsense |
probably null |
|
|
R5212:Arhgef7
|
UTSW |
8 |
11,778,388 (GRCm39) |
missense |
probably benign |
0.40 |
|
R5256:Arhgef7
|
UTSW |
8 |
11,850,811 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5718:Arhgef7
|
UTSW |
8 |
11,835,774 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6195:Arhgef7
|
UTSW |
8 |
11,872,017 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6503:Arhgef7
|
UTSW |
8 |
11,883,054 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
R6679:Arhgef7
|
UTSW |
8 |
11,874,667 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R7337:Arhgef7
|
UTSW |
8 |
11,835,789 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7422:Arhgef7
|
UTSW |
8 |
11,850,861 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7684:Arhgef7
|
UTSW |
8 |
11,869,663 (GRCm39) |
missense |
probably benign |
0.38 |
|
R7793:Arhgef7
|
UTSW |
8 |
11,874,507 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R8762:Arhgef7
|
UTSW |
8 |
11,831,216 (GRCm39) |
missense |
probably benign |
0.08 |
|
R8955:Arhgef7
|
UTSW |
8 |
11,808,451 (GRCm39) |
start gained |
probably benign |
|
|
R9022:Arhgef7
|
UTSW |
8 |
11,850,469 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9095:Arhgef7
|
UTSW |
8 |
11,835,819 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9425:Arhgef7
|
UTSW |
8 |
11,867,736 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9432:Arhgef7
|
UTSW |
8 |
11,869,646 (GRCm39) |
missense |
probably damaging |
0.99 |
|
| Predicted Primers |
PCR Primer
(F):5'- TTTTGGTTGGCCACACTCAGC -3'
(R):5'- TTAGAGATCGTGCCACCCATG -3'
Sequencing Primer
(F):5'- AAAGTGGTGAAAGGTCTTCCTGC -3'
(R):5'- CCATGGGATGGTGGGGGAG -3'
|
| Posted On |
2016-02-04 |
Incidental Mutation