Mutagenetix > Incidental Mutation

Incidental Mutation 'R4809:Ttc39a'

370884

Institutional Source

Beutler Lab

Gene Symbol

Ttc39a

Ensembl Gene

ENSMUSG00000028555

Gene Name

tetratricopeptide repeat domain 39A

Synonyms

4922503N01Rik

MMRRC Submission

042428-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4809 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

109406623-109444745 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 109416021 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 25 (Q25*)

Ref Sequence

ENSEMBL: ENSMUSP00000102230 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000064129] [ENSMUST00000106618] [ENSMUST00000106619] [ENSMUST00000124209] [ENSMUST00000139237] [ENSMUST00000153315]

AlphaFold

A2ACP1

Predicted Effect

probably null
Transcript: ENSMUST00000064129
AA Change: Q25*

SMART Domains

Protein: ENSMUSP00000066334
Gene: ENSMUSG00000028555
AA Change: Q25*

Domain	Start	End	E-Value	Type
TPR	278	311	7.69e1	SMART
TPR	468	501	6.57e1	SMART
TPR	509	542	1.42e0	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000106618
AA Change: Q27*

SMART Domains

Protein: ENSMUSP00000102229
Gene: ENSMUSG00000028555
AA Change: Q27*

Domain	Start	End	E-Value	Type
TPR	280	313	7.69e1	SMART
TPR	470	503	6.57e1	SMART
TPR	511	544	1.42e0	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000106619
AA Change: Q25*

SMART Domains

Protein: ENSMUSP00000102230
Gene: ENSMUSG00000028555
AA Change: Q25*

Domain	Start	End	E-Value	Type
Pfam:DUF3808	27	143	1e-38	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000124209

SMART Domains

Protein: ENSMUSP00000118672
Gene: ENSMUSG00000028555

Domain	Start	End	E-Value	Type
Pfam:DUF3808	1	137	6.6e-51	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126797

Predicted Effect

probably benign
Transcript: ENSMUST00000139237

SMART Domains

Protein: ENSMUSP00000121779
Gene: ENSMUSG00000028555

Domain	Start	End	E-Value	Type
Pfam:DUF3808	1	109	7.2e-40	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150909

Predicted Effect

probably benign
Transcript: ENSMUST00000153315

SMART Domains

Protein: ENSMUSP00000117621
Gene: ENSMUSG00000028555

Domain	Start	End	E-Value	Type
Pfam:DUF3808	1	160	2.6e-53	PFAM

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.0%

Validation Efficiency

96% (96/100)

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3425401B19Rik	A	G	14: 32,662,631 (GRCm38)	V459A	probably benign	Het
Abca12	C	T	1: 71,278,856 (GRCm38)	A1840T	probably benign	Het
Abhd6	T	G	14: 8,039,771 (GRCm38)	M1R	probably null	Het
Abl1	T	C	2: 31,800,242 (GRCm38)	L572P	probably damaging	Het
Adamts2	C	A	11: 50,803,690 (GRCm38)	S1101R	probably benign	Het
Adgra2	G	A	8: 27,110,479 (GRCm38)	W200*	probably null	Het
AI661453	C	A	17: 47,467,187 (GRCm38)		probably benign	Het
Aldh1l2	A	G	10: 83,506,632 (GRCm38)	F438S	probably damaging	Het
Ankrd49	G	A	9: 14,781,214 (GRCm38)	T218I	possibly damaging	Het
Ano7	T	C	1: 93,394,566 (GRCm38)	F410L	probably benign	Het
Aox4	T	A	1: 58,266,649 (GRCm38)	F1271I	probably damaging	Het
Aqr	T	C	2: 114,175,214 (GRCm38)		probably benign	Het
Arhgap42	A	G	9: 9,180,117 (GRCm38)	S54P	probably damaging	Het
Aunip	C	A	4: 134,511,139 (GRCm38)	D16E	possibly damaging	Het
Btbd7	A	G	12: 102,793,744 (GRCm38)		probably null	Het
Cabp4	T	C	19: 4,139,291 (GRCm38)	H89R	probably benign	Het
Ccni	AAA	AAACTAA	5: 93,187,570 (GRCm38)		probably benign	Het
Chfr	C	T	5: 110,158,834 (GRCm38)	H410Y	probably damaging	Het
Churc1	C	A	12: 76,782,897 (GRCm38)	L111M	probably damaging	Het
Clasp1	C	T	1: 118,461,250 (GRCm38)	T113I	probably benign	Het
Col12a1	T	A	9: 79,693,567 (GRCm38)	Q745L	probably benign	Het
Col20a1	T	C	2: 180,998,661 (GRCm38)	L537P	probably damaging	Het
Creb5	A	T	6: 53,610,426 (GRCm38)	E47V	probably null	Het
Csnk1d	A	T	11: 120,963,842 (GRCm38)		probably benign	Het
Cts6	A	T	13: 61,202,181 (GRCm38)	W29R	probably damaging	Het
Dbt	T	A	3: 116,546,343 (GRCm38)	I420N	probably damaging	Het
Det1	C	A	7: 78,843,807 (GRCm38)	D150Y	probably damaging	Het
Dlk2	A	G	17: 46,299,014 (GRCm38)		probably null	Het
Dnmt3a	A	T	12: 3,900,352 (GRCm38)	I639F	probably damaging	Het
Dock9	A	T	14: 121,546,596 (GRCm38)	Y1989N	probably benign	Het
Dsg4	A	T	18: 20,466,621 (GRCm38)	T765S	possibly damaging	Het
Epha5	C	T	5: 84,105,891 (GRCm38)	D548N	possibly damaging	Het
Fam189a1	G	A	7: 64,776,740 (GRCm38)	T159I	probably damaging	Het
Fam227b	T	A	2: 126,116,125 (GRCm38)	Y240F	possibly damaging	Het
Fbxw21	C	T	9: 109,143,390 (GRCm38)	V395I	probably damaging	Het
Fn1	C	A	1: 71,652,800 (GRCm38)		probably benign	Het
Fpr-rs3	A	T	17: 20,624,421 (GRCm38)	S153T	probably benign	Het
Frem2	A	G	3: 53,653,895 (GRCm38)	F1064L	probably benign	Het
Gas2l3	CACTCGTCATACT	CACT	10: 89,430,958 (GRCm38)		probably benign	Het
Gjd2	C	T	2: 114,011,541 (GRCm38)	G152R	probably damaging	Het
Gpr75	T	C	11: 30,892,154 (GRCm38)	I353T	possibly damaging	Het
Grb7	T	C	11: 98,451,436 (GRCm38)	V145A	possibly damaging	Het
Igkv4-73	G	A	6: 69,197,823 (GRCm38)	R40W	unknown	Het
Kif1c	C	T	11: 70,726,357 (GRCm38)	A839V	probably benign	Het
Krt31	G	A	11: 100,049,922 (GRCm38)	A125V	possibly damaging	Het
Lamb1	A	G	12: 31,278,526 (GRCm38)	Y163C	probably damaging	Het
Mars	G	T	10: 127,300,215 (GRCm38)	T535K	probably damaging	Het
Mdc1	T	C	17: 35,849,101 (GRCm38)		probably null	Het
Micu1	C	T	10: 59,740,822 (GRCm38)	H167Y	probably benign	Het
Minos1	C	G	4: 139,130,957 (GRCm38)	W10S	probably damaging	Het
Mrgprb1	C	T	7: 48,447,991 (GRCm38)	V58I	possibly damaging	Het
Ncoa7	T	A	10: 30,771,762 (GRCm38)	E6V	possibly damaging	Het
Nectin3	A	C	16: 46,448,160 (GRCm38)		probably benign	Het
Olfr1085	T	A	2: 86,657,685 (GRCm38)	M258L	possibly damaging	Het
Olfr1294	C	T	2: 111,537,611 (GRCm38)	C226Y	probably benign	Het
Olfr46	A	G	7: 140,611,074 (GRCm38)	K295E	probably damaging	Het
Olfr598	T	A	7: 103,328,523 (GRCm38)	Y12*	probably null	Het
Pex16	T	C	2: 92,376,638 (GRCm38)	S54P	probably damaging	Het
Pik3cg	A	T	12: 32,204,081 (GRCm38)	S636T	possibly damaging	Het
Plin5	A	G	17: 56,116,855 (GRCm38)	S27P	probably benign	Het
Ptch1	A	T	13: 63,513,708 (GRCm38)	D1068E	probably damaging	Het
Ptprq	T	C	10: 107,563,175 (GRCm38)	T1960A	probably damaging	Het
Rap1gap2	T	C	11: 74,407,974 (GRCm38)		probably benign	Het
Rcc2	G	A	4: 140,717,042 (GRCm38)	R348Q	probably damaging	Het
Rhbdd3	C	A	11: 5,105,949 (GRCm38)	A377D	probably damaging	Het
Rpl7	T	G	1: 16,101,965 (GRCm38)		probably benign	Het
Scn11a	G	T	9: 119,819,870 (GRCm38)	D42E	probably benign	Het
Scube3	C	T	17: 28,165,173 (GRCm38)	R549W	probably damaging	Het
Sil1	A	T	18: 35,325,375 (GRCm38)	M189K	probably damaging	Het
Slc39a6	G	A	18: 24,585,474 (GRCm38)	Q225*	probably null	Het
Slc7a15	A	T	12: 8,539,002 (GRCm38)	C182S	probably benign	Het
Spata21	G	A	4: 141,097,120 (GRCm38)		probably null	Het
Stim2	T	C	5: 54,110,613 (GRCm38)	V417A	probably damaging	Het
Szt2	T	C	4: 118,388,985 (GRCm38)	D993G	probably damaging	Het
Tet3	A	G	6: 83,402,946 (GRCm38)	S747P	probably benign	Het
Tmem86a	C	G	7: 47,052,930 (GRCm38)	S34R	possibly damaging	Het
Top2b	T	A	14: 16,383,125 (GRCm38)	S38T	probably benign	Het
Trim33	A	T	3: 103,329,256 (GRCm38)	T561S	possibly damaging	Het
Urb1	A	G	16: 90,759,842 (GRCm38)	I1816T	possibly damaging	Het
Usp24	T	C	4: 106,413,676 (GRCm38)		probably null	Het
Usp36	A	C	11: 118,263,070 (GRCm38)	L840R	probably damaging	Het
Usp50	C	A	2: 126,777,853 (GRCm38)		probably benign	Het
Vangl2	A	G	1: 172,009,663 (GRCm38)	V193A	possibly damaging	Het
Vmn1r62	T	A	7: 5,675,867 (GRCm38)	H182Q	probably benign	Het
Vmn2r124	A	T	17: 18,073,745 (GRCm38)	Y698F	probably benign	Het
Wls	C	T	3: 159,897,445 (GRCm38)	T165I	probably benign	Het
Zfp808	G	T	13: 62,171,292 (GRCm38)	E112*	probably null	Het

Other mutations in Ttc39a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00870:Ttc39a	APN	4	109,442,345 (GRCm38)	splice site	probably benign
IGL01143:Ttc39a	APN	4	109,442,813 (GRCm38)	critical splice donor site	probably null
IGL01802:Ttc39a	APN	4	109,433,084 (GRCm38)	nonsense	probably null
IGL01906:Ttc39a	APN	4	109,421,394 (GRCm38)	missense	probably benign	0.04
IGL02115:Ttc39a	APN	4	109,426,294 (GRCm38)	splice site	probably benign
IGL02415:Ttc39a	APN	4	109,431,529 (GRCm38)	unclassified	probably benign
IGL02658:Ttc39a	APN	4	109,422,893 (GRCm38)	missense	probably damaging	1.00
IGL02728:Ttc39a	APN	4	109,442,723 (GRCm38)	missense	probably damaging	1.00
IGL03281:Ttc39a	APN	4	109,433,022 (GRCm38)	missense	possibly damaging	0.84
R0030:Ttc39a	UTSW	4	109,422,973 (GRCm38)	missense	probably benign
R0103:Ttc39a	UTSW	4	109,421,453 (GRCm38)	splice site	probably null
R0194:Ttc39a	UTSW	4	109,444,179 (GRCm38)	missense	probably benign
R0561:Ttc39a	UTSW	4	109,440,602 (GRCm38)	missense	probably damaging	1.00
R0603:Ttc39a	UTSW	4	109,426,302 (GRCm38)	missense	probably damaging	1.00
R2132:Ttc39a	UTSW	4	109,442,706 (GRCm38)	missense	probably damaging	1.00
R2203:Ttc39a	UTSW	4	109,431,588 (GRCm38)	missense	probably benign	0.19
R2473:Ttc39a	UTSW	4	109,442,239 (GRCm38)	missense	probably damaging	0.97
R4449:Ttc39a	UTSW	4	109,442,303 (GRCm38)	missense	possibly damaging	0.82
R5266:Ttc39a	UTSW	4	109,422,504 (GRCm38)	missense	probably benign	0.04
R5590:Ttc39a	UTSW	4	109,432,987 (GRCm38)	critical splice acceptor site	probably null
R5911:Ttc39a	UTSW	4	109,422,971 (GRCm38)	missense	possibly damaging	0.79
R5930:Ttc39a	UTSW	4	109,430,878 (GRCm38)	missense	probably benign
R7058:Ttc39a	UTSW	4	109,431,566 (GRCm38)	missense	probably damaging	1.00
R7771:Ttc39a	UTSW	4	109,431,450 (GRCm38)	missense	probably damaging	1.00
R7791:Ttc39a	UTSW	4	109,426,347 (GRCm38)	missense	probably benign	0.00
R7849:Ttc39a	UTSW	4	109,422,490 (GRCm38)	missense	probably benign	0.00
R8687:Ttc39a	UTSW	4	109,431,579 (GRCm38)	missense	probably damaging	0.97
R8723:Ttc39a	UTSW	4	109,443,503 (GRCm38)	splice site	probably benign
R9037:Ttc39a	UTSW	4	109,442,784 (GRCm38)	missense	probably damaging	1.00
R9626:Ttc39a	UTSW	4	109,421,373 (GRCm38)	missense	possibly damaging	0.83
X0013:Ttc39a	UTSW	4	109,433,137 (GRCm38)	missense	probably benign	0.02
Z1177:Ttc39a	UTSW	4	109,430,932 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CCTGAGAGGTGGCTGTAAAC -3'
(R):5'- TGTCTACAGGCTGTAAAAGGGG -3'

Sequencing Primer
(F):5'- TGGCTGTAAACCATCCCCGTG -3'
(R):5'- CCTGGGCAATTTGGATGAGAC -3'

Posted On

2016-02-04