Incidental Mutation 'R4809:Adamts2'
| ID |
370922 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Adamts2
|
| Ensembl Gene |
ENSMUSG00000036545 |
| Gene Name |
ADAM metallopeptidase with thrombospondin type 1 motif 2 |
| Synonyms |
a disintegrin and metalloproteinase with thrombospondin repeats, hPCPNI, ADAM-TS2, procollagen N-proteinase |
| MMRRC Submission |
042428-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.093)
|
| Stock # |
R4809 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
11 |
| Chromosomal Location |
50492912-50698400 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to A
at 50694517 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Arginine
at position 1101
(S1101R)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000040171
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000040523]
|
| AlphaFold |
Q8C9W3 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000040523
AA Change: S1101R
PolyPhen 2
Score 0.175 (Sensitivity: 0.92; Specificity: 0.87)
|
| SMART Domains |
Protein: ENSMUSP00000040171
Gene: ENSMUSG00000036545
AA Change: S1101R
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
28 |
N/A |
INTRINSIC |
|
low complexity region
|
44 |
52 |
N/A |
INTRINSIC |
|
Pfam:Pep_M12B_propep
|
56 |
211 |
2.6e-39 |
PFAM |
|
low complexity region
|
214 |
225 |
N/A |
INTRINSIC |
|
coiled coil region
|
236 |
260 |
N/A |
INTRINSIC |
|
Pfam:Reprolysin_5
|
265 |
450 |
1.4e-15 |
PFAM |
|
Pfam:Reprolysin_4
|
267 |
464 |
7.1e-11 |
PFAM |
|
Pfam:Reprolysin
|
268 |
471 |
2.4e-20 |
PFAM |
|
Pfam:Reprolysin_2
|
285 |
463 |
9.1e-14 |
PFAM |
|
Pfam:Reprolysin_3
|
289 |
420 |
8.7e-13 |
PFAM |
|
TSP1
|
565 |
617 |
9.73e-17 |
SMART |
|
Pfam:ADAM_spacer1
|
724 |
838 |
5.1e-33 |
PFAM |
|
low complexity region
|
839 |
853 |
N/A |
INTRINSIC |
|
TSP1
|
858 |
915 |
1.05e-3 |
SMART |
|
TSP1
|
918 |
977 |
2.78e-3 |
SMART |
|
TSP1
|
980 |
1030 |
4.99e-5 |
SMART |
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 96.8%
- 20x: 94.0%
|
| Validation Efficiency |
96% (96/100) |
| MGI Phenotype |
FUNCTION: This gene encodes a member of the ADAMTS (a disintegrin and metalloproteinase with thrombospondin repeats) family of proteinases that is involved in the proteolytic processing of procollagens. The encoded protein precursor is proteolytically processed to generate a mature, zinc-dependent enzyme. Mice lacking the encoded protein develop abnormal lungs, fragile skin and male sterility. [provided by RefSeq, Aug 2015]
PHENOTYPE: Homozygous mutation of this gene results in a short snout, male infertility, and thin skin that is torn by scratching or handling. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 87 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 3425401B19Rik |
A |
G |
14: 32,384,588 (GRCm39) |
V459A |
probably benign |
Het |
| Abca12 |
C |
T |
1: 71,318,015 (GRCm39) |
A1840T |
probably benign |
Het |
| Abhd6 |
T |
G |
14: 8,039,771 (GRCm38) |
M1R |
probably null |
Het |
| Abl1 |
T |
C |
2: 31,690,254 (GRCm39) |
L572P |
probably damaging |
Het |
| Adgra2 |
G |
A |
8: 27,600,507 (GRCm39) |
W200* |
probably null |
Het |
| AI661453 |
C |
A |
17: 47,778,112 (GRCm39) |
|
probably benign |
Het |
| Aldh1l2 |
A |
G |
10: 83,342,496 (GRCm39) |
F438S |
probably damaging |
Het |
| Ankrd49 |
G |
A |
9: 14,692,510 (GRCm39) |
T218I |
possibly damaging |
Het |
| Ano7 |
T |
C |
1: 93,322,288 (GRCm39) |
F410L |
probably benign |
Het |
| Aox4 |
T |
A |
1: 58,305,808 (GRCm39) |
F1271I |
probably damaging |
Het |
| Aqr |
T |
C |
2: 114,005,695 (GRCm39) |
|
probably benign |
Het |
| Arhgap42 |
A |
G |
9: 9,180,118 (GRCm39) |
S54P |
probably damaging |
Het |
| Aunip |
C |
A |
4: 134,238,450 (GRCm39) |
D16E |
possibly damaging |
Het |
| Btbd7 |
A |
G |
12: 102,760,003 (GRCm39) |
|
probably null |
Het |
| Cabp4 |
T |
C |
19: 4,189,290 (GRCm39) |
H89R |
probably benign |
Het |
| Ccni |
AAA |
AAACTAA |
5: 93,335,429 (GRCm39) |
|
probably benign |
Het |
| Chfr |
C |
T |
5: 110,306,700 (GRCm39) |
H410Y |
probably damaging |
Het |
| Churc1 |
C |
A |
12: 76,829,671 (GRCm39) |
L111M |
probably damaging |
Het |
| Clasp1 |
C |
T |
1: 118,388,980 (GRCm39) |
T113I |
probably benign |
Het |
| Col12a1 |
T |
A |
9: 79,600,849 (GRCm39) |
Q745L |
probably benign |
Het |
| Col20a1 |
T |
C |
2: 180,640,454 (GRCm39) |
L537P |
probably damaging |
Het |
| Creb5 |
A |
T |
6: 53,587,411 (GRCm39) |
E47V |
probably null |
Het |
| Csnk1d |
A |
T |
11: 120,854,668 (GRCm39) |
|
probably benign |
Het |
| Cts6 |
A |
T |
13: 61,349,995 (GRCm39) |
W29R |
probably damaging |
Het |
| Dbt |
T |
A |
3: 116,339,992 (GRCm39) |
I420N |
probably damaging |
Het |
| Det1 |
C |
A |
7: 78,493,555 (GRCm39) |
D150Y |
probably damaging |
Het |
| Dlk2 |
A |
G |
17: 46,609,940 (GRCm39) |
|
probably null |
Het |
| Dnmt3a |
A |
T |
12: 3,950,352 (GRCm39) |
I639F |
probably damaging |
Het |
| Dock9 |
A |
T |
14: 121,784,008 (GRCm39) |
Y1989N |
probably benign |
Het |
| Dsg4 |
A |
T |
18: 20,599,678 (GRCm39) |
T765S |
possibly damaging |
Het |
| Entrep2 |
G |
A |
7: 64,426,488 (GRCm39) |
T159I |
probably damaging |
Het |
| Epha5 |
C |
T |
5: 84,253,750 (GRCm39) |
D548N |
possibly damaging |
Het |
| Fam227b |
T |
A |
2: 125,958,045 (GRCm39) |
Y240F |
possibly damaging |
Het |
| Fbxw21 |
C |
T |
9: 108,972,458 (GRCm39) |
V395I |
probably damaging |
Het |
| Fn1 |
C |
A |
1: 71,691,959 (GRCm39) |
|
probably benign |
Het |
| Fpr-rs3 |
A |
T |
17: 20,844,683 (GRCm39) |
S153T |
probably benign |
Het |
| Frem2 |
A |
G |
3: 53,561,316 (GRCm39) |
F1064L |
probably benign |
Het |
| Gas2l3 |
CACTCGTCATACT |
CACT |
10: 89,266,820 (GRCm39) |
|
probably benign |
Het |
| Gjd2 |
C |
T |
2: 113,842,022 (GRCm39) |
G152R |
probably damaging |
Het |
| Gpr75 |
T |
C |
11: 30,842,154 (GRCm39) |
I353T |
possibly damaging |
Het |
| Grb7 |
T |
C |
11: 98,342,262 (GRCm39) |
V145A |
possibly damaging |
Het |
| Igkv4-73 |
G |
A |
6: 69,174,807 (GRCm39) |
R40W |
unknown |
Het |
| Kif1c |
C |
T |
11: 70,617,183 (GRCm39) |
A839V |
probably benign |
Het |
| Krt31 |
G |
A |
11: 99,940,748 (GRCm39) |
A125V |
possibly damaging |
Het |
| Lamb1 |
A |
G |
12: 31,328,525 (GRCm39) |
Y163C |
probably damaging |
Het |
| Mars1 |
G |
T |
10: 127,136,084 (GRCm39) |
T535K |
probably damaging |
Het |
| Mdc1 |
T |
C |
17: 36,159,993 (GRCm39) |
|
probably null |
Het |
| Micos10 |
C |
G |
4: 138,858,268 (GRCm39) |
W10S |
probably damaging |
Het |
| Micu1 |
C |
T |
10: 59,576,644 (GRCm39) |
H167Y |
probably benign |
Het |
| Mrgprb1 |
C |
T |
7: 48,097,739 (GRCm39) |
V58I |
possibly damaging |
Het |
| Ncoa7 |
T |
A |
10: 30,647,758 (GRCm39) |
E6V |
possibly damaging |
Het |
| Nectin3 |
A |
C |
16: 46,268,523 (GRCm39) |
|
probably benign |
Het |
| Or13a18 |
A |
G |
7: 140,190,987 (GRCm39) |
K295E |
probably damaging |
Het |
| Or4k44 |
C |
T |
2: 111,367,956 (GRCm39) |
C226Y |
probably benign |
Het |
| Or52ab7 |
T |
A |
7: 102,977,730 (GRCm39) |
Y12* |
probably null |
Het |
| Or8k38 |
T |
A |
2: 86,488,029 (GRCm39) |
M258L |
possibly damaging |
Het |
| Pex16 |
T |
C |
2: 92,206,983 (GRCm39) |
S54P |
probably damaging |
Het |
| Pik3cg |
A |
T |
12: 32,254,080 (GRCm39) |
S636T |
possibly damaging |
Het |
| Plin5 |
A |
G |
17: 56,423,855 (GRCm39) |
S27P |
probably benign |
Het |
| Ptch1 |
A |
T |
13: 63,661,522 (GRCm39) |
D1068E |
probably damaging |
Het |
| Ptprq |
T |
C |
10: 107,399,036 (GRCm39) |
T1960A |
probably damaging |
Het |
| Rap1gap2 |
T |
C |
11: 74,298,800 (GRCm39) |
|
probably benign |
Het |
| Rcc2 |
G |
A |
4: 140,444,353 (GRCm39) |
R348Q |
probably damaging |
Het |
| Rhbdd3 |
C |
A |
11: 5,055,949 (GRCm39) |
A377D |
probably damaging |
Het |
| Rpl7 |
T |
G |
1: 16,172,189 (GRCm39) |
|
probably benign |
Het |
| Scn11a |
G |
T |
9: 119,648,936 (GRCm39) |
D42E |
probably benign |
Het |
| Scube3 |
C |
T |
17: 28,384,147 (GRCm39) |
R549W |
probably damaging |
Het |
| Sil1 |
A |
T |
18: 35,458,428 (GRCm39) |
M189K |
probably damaging |
Het |
| Slc39a6 |
G |
A |
18: 24,718,531 (GRCm39) |
Q225* |
probably null |
Het |
| Slc7a15 |
A |
T |
12: 8,589,002 (GRCm39) |
C182S |
probably benign |
Het |
| Spata21 |
G |
A |
4: 140,824,431 (GRCm39) |
|
probably null |
Het |
| Stim2 |
T |
C |
5: 54,267,955 (GRCm39) |
V417A |
probably damaging |
Het |
| Szt2 |
T |
C |
4: 118,246,182 (GRCm39) |
D993G |
probably damaging |
Het |
| Tet3 |
A |
G |
6: 83,379,928 (GRCm39) |
S747P |
probably benign |
Het |
| Tmem86a |
C |
G |
7: 46,702,678 (GRCm39) |
S34R |
possibly damaging |
Het |
| Top2b |
T |
A |
14: 16,383,125 (GRCm38) |
S38T |
probably benign |
Het |
| Trim33 |
A |
T |
3: 103,236,572 (GRCm39) |
T561S |
possibly damaging |
Het |
| Ttc39a |
C |
T |
4: 109,273,218 (GRCm39) |
Q25* |
probably null |
Het |
| Urb1 |
A |
G |
16: 90,556,730 (GRCm39) |
I1816T |
possibly damaging |
Het |
| Usp24 |
T |
C |
4: 106,270,873 (GRCm39) |
|
probably null |
Het |
| Usp36 |
A |
C |
11: 118,153,896 (GRCm39) |
L840R |
probably damaging |
Het |
| Usp50 |
C |
A |
2: 126,619,773 (GRCm39) |
|
probably benign |
Het |
| Vangl2 |
A |
G |
1: 171,837,230 (GRCm39) |
V193A |
possibly damaging |
Het |
| Vmn1r62 |
T |
A |
7: 5,678,866 (GRCm39) |
H182Q |
probably benign |
Het |
| Vmn2r124 |
A |
T |
17: 18,294,007 (GRCm39) |
Y698F |
probably benign |
Het |
| Wls |
C |
T |
3: 159,603,082 (GRCm39) |
T165I |
probably benign |
Het |
| Zfp808 |
G |
T |
13: 62,319,106 (GRCm39) |
E112* |
probably null |
Het |
|
| Other mutations in Adamts2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01309:Adamts2
|
APN |
11 |
50,694,528 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01366:Adamts2
|
APN |
11 |
50,687,295 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01412:Adamts2
|
APN |
11 |
50,686,230 (GRCm39) |
missense |
probably benign |
0.43 |
|
IGL01443:Adamts2
|
APN |
11 |
50,694,690 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
IGL01974:Adamts2
|
APN |
11 |
50,667,001 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02267:Adamts2
|
APN |
11 |
50,683,505 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02498:Adamts2
|
APN |
11 |
50,668,023 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02498:Adamts2
|
APN |
11 |
50,664,135 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
IGL02626:Adamts2
|
APN |
11 |
50,667,082 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02634:Adamts2
|
APN |
11 |
50,683,548 (GRCm39) |
nonsense |
probably null |
|
|
IGL02643:Adamts2
|
APN |
11 |
50,679,527 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02836:Adamts2
|
APN |
11 |
50,678,106 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03012:Adamts2
|
APN |
11 |
50,667,096 (GRCm39) |
splice site |
probably benign |
|
|
ANU22:Adamts2
|
UTSW |
11 |
50,628,190 (GRCm39) |
missense |
probably benign |
0.06 |
|
H8441:Adamts2
|
UTSW |
11 |
50,675,505 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0050:Adamts2
|
UTSW |
11 |
50,666,222 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0050:Adamts2
|
UTSW |
11 |
50,666,222 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0240:Adamts2
|
UTSW |
11 |
50,666,201 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0240:Adamts2
|
UTSW |
11 |
50,666,201 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0491:Adamts2
|
UTSW |
11 |
50,667,457 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R0501:Adamts2
|
UTSW |
11 |
50,558,972 (GRCm39) |
missense |
probably benign |
0.16 |
|
R0570:Adamts2
|
UTSW |
11 |
50,666,963 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0588:Adamts2
|
UTSW |
11 |
50,667,491 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0647:Adamts2
|
UTSW |
11 |
50,494,265 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0760:Adamts2
|
UTSW |
11 |
50,666,153 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0784:Adamts2
|
UTSW |
11 |
50,558,830 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1163:Adamts2
|
UTSW |
11 |
50,670,541 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1623:Adamts2
|
UTSW |
11 |
50,558,942 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R1641:Adamts2
|
UTSW |
11 |
50,683,612 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1779:Adamts2
|
UTSW |
11 |
50,647,524 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2163:Adamts2
|
UTSW |
11 |
50,679,632 (GRCm39) |
missense |
probably benign |
0.36 |
|
R2177:Adamts2
|
UTSW |
11 |
50,668,055 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R2508:Adamts2
|
UTSW |
11 |
50,679,516 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R3721:Adamts2
|
UTSW |
11 |
50,664,038 (GRCm39) |
splice site |
probably benign |
|
|
R4092:Adamts2
|
UTSW |
11 |
50,678,103 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4691:Adamts2
|
UTSW |
11 |
50,647,523 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4785:Adamts2
|
UTSW |
11 |
50,683,549 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4823:Adamts2
|
UTSW |
11 |
50,628,014 (GRCm39) |
missense |
probably benign |
0.26 |
|
R4927:Adamts2
|
UTSW |
11 |
50,694,639 (GRCm39) |
nonsense |
probably null |
|
|
R4976:Adamts2
|
UTSW |
11 |
50,628,193 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R5118:Adamts2
|
UTSW |
11 |
50,672,696 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5478:Adamts2
|
UTSW |
11 |
50,683,478 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R5660:Adamts2
|
UTSW |
11 |
50,667,472 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5734:Adamts2
|
UTSW |
11 |
50,679,494 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5865:Adamts2
|
UTSW |
11 |
50,694,781 (GRCm39) |
nonsense |
probably null |
|
|
R6079:Adamts2
|
UTSW |
11 |
50,647,533 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6138:Adamts2
|
UTSW |
11 |
50,647,533 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6257:Adamts2
|
UTSW |
11 |
50,666,153 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6540:Adamts2
|
UTSW |
11 |
50,679,567 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
R6897:Adamts2
|
UTSW |
11 |
50,627,991 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R7103:Adamts2
|
UTSW |
11 |
50,628,181 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7229:Adamts2
|
UTSW |
11 |
50,682,647 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7261:Adamts2
|
UTSW |
11 |
50,677,424 (GRCm39) |
missense |
possibly damaging |
0.48 |
|
R7335:Adamts2
|
UTSW |
11 |
50,493,093 (GRCm39) |
missense |
probably benign |
0.18 |
|
R7373:Adamts2
|
UTSW |
11 |
50,686,262 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7505:Adamts2
|
UTSW |
11 |
50,687,347 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7971:Adamts2
|
UTSW |
11 |
50,647,523 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8081:Adamts2
|
UTSW |
11 |
50,668,004 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8167:Adamts2
|
UTSW |
11 |
50,670,541 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8256:Adamts2
|
UTSW |
11 |
50,683,583 (GRCm39) |
missense |
probably benign |
0.41 |
|
R8298:Adamts2
|
UTSW |
11 |
50,667,958 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R8343:Adamts2
|
UTSW |
11 |
50,494,315 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8518:Adamts2
|
UTSW |
11 |
50,666,957 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8716:Adamts2
|
UTSW |
11 |
50,664,091 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8865:Adamts2
|
UTSW |
11 |
50,672,571 (GRCm39) |
nonsense |
probably null |
|
|
R8968:Adamts2
|
UTSW |
11 |
50,683,550 (GRCm39) |
missense |
possibly damaging |
0.72 |
|
R9436:Adamts2
|
UTSW |
11 |
50,694,507 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9694:Adamts2
|
UTSW |
11 |
50,558,972 (GRCm39) |
missense |
probably benign |
0.16 |
|
R9720:Adamts2
|
UTSW |
11 |
50,666,954 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9750:Adamts2
|
UTSW |
11 |
50,494,333 (GRCm39) |
missense |
probably benign |
0.00 |
|
U15987:Adamts2
|
UTSW |
11 |
50,647,533 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0065:Adamts2
|
UTSW |
11 |
50,694,476 (GRCm39) |
nonsense |
probably null |
|
|
Z1176:Adamts2
|
UTSW |
11 |
50,683,535 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GCAGACACCGCAATTATCCTG -3'
(R):5'- CATCCACAGCATTGGTTTCTGG -3'
Sequencing Primer
(F):5'- TGGACTCTGTCACACGCC -3'
(R):5'- CACAGCATTGGTTTCTGGGTGATC -3'
|
| Posted On |
2016-02-04 |
Incidental Mutation