Incidental Mutation 'R4840:Chd1'
ID 371779
Institutional Source Beutler Lab
Gene Symbol Chd1
Ensembl Gene ENSMUSG00000023852
Gene Name chromodomain helicase DNA binding protein 1
Synonyms 4930525N21Rik
MMRRC Submission 042453-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R4840 (G1)
Quality Score 225
Status Validated
Chromosome 17
Chromosomal Location 15925229-15992872 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) G to A at 15989015 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tryptophan to Stop codon at position 1589 (W1589*)
Ref Sequence ENSEMBL: ENSMUSP00000024627 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000024627]
AlphaFold P40201
Predicted Effect probably null
Transcript: ENSMUST00000024627
AA Change: W1589*
SMART Domains Protein: ENSMUSP00000024627
Gene: ENSMUSG00000023852
AA Change: W1589*

DomainStartEndE-ValueType
low complexity region 17 67 N/A INTRINSIC
low complexity region 105 115 N/A INTRINSIC
low complexity region 116 136 N/A INTRINSIC
low complexity region 151 175 N/A INTRINSIC
low complexity region 213 230 N/A INTRINSIC
CHROMO 268 355 6.43e-20 SMART
CHROMO 385 443 1.19e-14 SMART
DEXDc 475 672 3.44e-34 SMART
Blast:DEXDc 692 786 2e-54 BLAST
low complexity region 787 799 N/A INTRINSIC
HELICc 816 900 8.48e-25 SMART
Blast:DEXDc 955 1234 1e-112 BLAST
PDB:4B4C|A 1119 1320 1e-132 PDB
low complexity region 1325 1348 N/A INTRINSIC
low complexity region 1377 1388 N/A INTRINSIC
DUF4208 1396 1500 5.54e-51 SMART
low complexity region 1507 1516 N/A INTRINSIC
low complexity region 1538 1549 N/A INTRINSIC
low complexity region 1626 1650 N/A INTRINSIC
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.9%
  • 20x: 94.1%
Validation Efficiency 97% (114/117)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The CHD family of proteins is characterized by the presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit complete embryonic lethality associated with arrest of epiblast development due to increased apoptosis and cell cycle defects, abnormal rostral-caudal axis patterning, and failure to gastrulate. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 102 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2810459M11Rik C A 1: 85,974,166 (GRCm39) T161K probably benign Het
Actn3 G A 19: 4,914,539 (GRCm39) R530W probably damaging Het
Alg11 C T 8: 22,558,026 (GRCm39) A404V possibly damaging Het
Alkbh8 T A 9: 3,369,751 (GRCm39) V340D probably damaging Het
Arhgef12 T C 9: 42,886,364 (GRCm39) H1166R probably benign Het
Aspm T A 1: 139,398,269 (GRCm39) D978E possibly damaging Het
Bod1l C T 5: 41,975,815 (GRCm39) G1833D probably damaging Het
Brd3 A G 2: 27,339,251 (GRCm39) V676A possibly damaging Het
Brip1 G A 11: 86,037,009 (GRCm39) T454I possibly damaging Het
C3ar1 T C 6: 122,827,723 (GRCm39) I165V probably benign Het
Camta1 T A 4: 151,228,864 (GRCm39) Q656L probably benign Het
Casp14 A T 10: 78,549,178 (GRCm39) L256* probably null Het
Cdh23 G T 10: 60,255,556 (GRCm39) H773Q possibly damaging Het
Cldn19 A G 4: 119,112,951 (GRCm39) Q61R probably damaging Het
Cyp2a22 A G 7: 26,631,949 (GRCm39) S436P probably benign Het
Emc10 A C 7: 44,142,051 (GRCm39) V124G probably damaging Het
Enam A T 5: 88,650,885 (GRCm39) D723V probably benign Het
Eps8 C A 6: 137,504,128 (GRCm39) Q158H probably damaging Het
Ercc6 G A 14: 32,263,253 (GRCm39) D486N probably damaging Het
Fasn T C 11: 120,703,885 (GRCm39) E1485G possibly damaging Het
Fat2 T C 11: 55,169,844 (GRCm39) K2972E probably benign Het
Fbxw28 T C 9: 109,168,602 (GRCm39) K30R probably null Het
Flot2 T A 11: 77,948,339 (GRCm39) L164Q probably damaging Het
Fsip2 A T 2: 82,779,739 (GRCm39) I162L probably benign Het
Fsip2 A T 2: 82,815,815 (GRCm39) L3849F probably benign Het
Gabrb1 C G 5: 71,858,154 (GRCm39) P60R probably damaging Het
Galnt14 T C 17: 73,811,893 (GRCm39) R443G probably benign Het
Gas8 C T 8: 124,257,753 (GRCm39) T400M probably benign Het
Gfap T C 11: 102,785,214 (GRCm39) Y254C probably damaging Het
Git2 A G 5: 114,883,543 (GRCm39) S396P probably damaging Het
Glb1l3 A T 9: 26,740,349 (GRCm39) M327K probably benign Het
Gm10715 A C 9: 3,038,062 (GRCm39) probably benign Het
Gm10787 G A 10: 76,857,841 (GRCm39) noncoding transcript Het
Gm1123 T A 9: 98,900,622 (GRCm39) D78V probably damaging Het
Gm27013 T C 6: 130,655,079 (GRCm39) T128A probably benign Het
Gpbp1 A G 13: 111,577,164 (GRCm39) probably null Het
Gphn G A 12: 78,569,729 (GRCm39) probably null Het
Gpr157 A G 4: 150,186,823 (GRCm39) E317G probably benign Het
Gsdmc4 T A 15: 63,765,596 (GRCm39) M318L probably benign Het
Gtf2f2 A T 14: 76,248,131 (GRCm39) W19R probably damaging Het
Gvin-ps3 T C 7: 105,680,627 (GRCm39) noncoding transcript Het
Helb A G 10: 119,920,763 (GRCm39) V1060A probably benign Het
Igfn1 C T 1: 135,895,778 (GRCm39) G1596D probably benign Het
Il1rl2 T C 1: 40,366,547 (GRCm39) I27T possibly damaging Het
Inpp5j A G 11: 3,449,676 (GRCm39) V702A probably damaging Het
Kmt2d A C 15: 98,759,775 (GRCm39) V1161G unknown Het
Krtap1-3 T G 11: 99,481,715 (GRCm39) Y144S possibly damaging Het
Layn C T 9: 50,968,682 (GRCm39) V354M probably damaging Het
Lrba G A 3: 86,526,816 (GRCm39) probably null Het
Lrp8 T A 4: 107,727,234 (GRCm39) L893Q possibly damaging Het
Mrps9 T A 1: 42,937,575 (GRCm39) probably benign Het
Mug1 T A 6: 121,862,813 (GRCm39) M1387K probably damaging Het
Myo18b A C 5: 113,021,895 (GRCm39) V499G probably benign Het
Nbea T C 3: 55,618,091 (GRCm39) E2321G probably benign Het
Nrsn2 C T 2: 152,211,552 (GRCm39) V160I probably benign Het
Nup210 G A 6: 91,008,650 (GRCm39) Q510* probably null Het
Ofcc1 G A 13: 40,168,864 (GRCm39) T841I probably damaging Het
Or2ag12 T G 7: 106,277,330 (GRCm39) D121A probably damaging Het
P3h3 G T 6: 124,827,600 (GRCm39) Q479K possibly damaging Het
Paqr9 T A 9: 95,442,723 (GRCm39) F238I probably damaging Het
Parp3 A T 9: 106,350,308 (GRCm39) L343H probably damaging Het
Pcdh18 A C 3: 49,699,117 (GRCm39) M1115R probably damaging Het
Pcdh8 A G 14: 80,008,308 (GRCm39) V85A possibly damaging Het
Pcdhb4 A G 18: 37,441,452 (GRCm39) N254S possibly damaging Het
Pld1 T C 3: 28,130,700 (GRCm39) V500A probably benign Het
Pramel29 T C 4: 143,935,144 (GRCm39) K199R probably damaging Het
Prkg2 A T 5: 99,129,002 (GRCm39) D311E probably benign Het
Prss42 T C 9: 110,628,369 (GRCm39) L171P probably damaging Het
Pth2 T A 7: 44,830,767 (GRCm39) L17H probably damaging Het
Reln A T 5: 22,223,844 (GRCm39) probably null Het
Rmi2 G T 16: 10,657,701 (GRCm39) V104L probably damaging Het
Rpusd4 T A 9: 35,179,831 (GRCm39) V108D probably damaging Het
Rufy4 C A 1: 74,168,198 (GRCm39) T82K possibly damaging Het
Scimp G A 11: 70,682,294 (GRCm39) Q141* probably null Het
Sel1l2 T C 2: 140,105,390 (GRCm39) T267A probably benign Het
Sema5a T A 15: 32,550,400 (GRCm39) S146R possibly damaging Het
Sh2d3c T C 2: 32,611,172 (GRCm39) M1T probably null Het
Slc30a6 T C 17: 74,712,716 (GRCm39) L71P probably damaging Het
Srrm3 A G 5: 135,883,449 (GRCm39) Y224C possibly damaging Het
Tacr3 A T 3: 134,560,615 (GRCm39) T185S possibly damaging Het
Tas2r140 T A 6: 133,032,528 (GRCm39) T77S probably benign Het
Thsd7b T C 1: 129,523,581 (GRCm39) V128A probably benign Het
Tnfrsf10b T G 14: 70,013,608 (GRCm39) H179Q probably damaging Het
Tonsl A G 15: 76,517,409 (GRCm39) V770A probably benign Het
Trim42 G A 9: 97,244,982 (GRCm39) P606L probably benign Het
Trim45 A T 3: 100,832,804 (GRCm39) T346S possibly damaging Het
Ttc28 C A 5: 111,433,947 (GRCm39) S2296Y probably damaging Het
Ttc41 C T 10: 86,566,989 (GRCm39) R552C probably benign Het
Tube1 A G 10: 39,020,842 (GRCm39) N243D probably benign Het
Tvp23b G T 11: 62,770,424 (GRCm39) probably null Het
Ubxn11 T A 4: 133,836,919 (GRCm39) I49N probably damaging Het
Usp17le T A 7: 104,418,977 (GRCm39) E55V probably benign Het
Vmn2r114 A T 17: 23,510,353 (GRCm39) V709D probably damaging Het
Vmn2r129 G C 4: 156,685,733 (GRCm39) noncoding transcript Het
Vmn2r23 C T 6: 123,690,033 (GRCm39) T303M probably damaging Het
Vmn2r60 C T 7: 41,785,285 (GRCm39) P166S probably damaging Het
Vmn2r83 A G 10: 79,313,682 (GRCm39) I97V possibly damaging Het
Wbp2nl A T 15: 82,198,537 (GRCm39) K358M possibly damaging Het
Xpo1 T A 11: 23,228,183 (GRCm39) I150N probably damaging Het
Zfp113 G A 5: 138,143,687 (GRCm39) L188F probably damaging Het
Zfp189 T G 4: 49,529,984 (GRCm39) S362R probably damaging Het
Zfp593os A G 4: 133,972,587 (GRCm39) probably benign Het
Other mutations in Chd1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00704:Chd1 APN 17 15,952,827 (GRCm39) missense probably benign 0.37
IGL01356:Chd1 APN 17 15,970,127 (GRCm39) missense probably damaging 1.00
IGL01369:Chd1 APN 17 15,975,259 (GRCm39) missense probably damaging 0.97
IGL01519:Chd1 APN 17 17,598,831 (GRCm39) missense probably damaging 1.00
IGL01604:Chd1 APN 17 15,990,359 (GRCm39) missense possibly damaging 0.95
IGL01635:Chd1 APN 17 17,598,858 (GRCm39) missense probably damaging 1.00
IGL01721:Chd1 APN 17 15,990,430 (GRCm39) missense probably damaging 1.00
IGL01959:Chd1 APN 17 15,962,435 (GRCm39) missense probably damaging 1.00
IGL02367:Chd1 APN 17 17,610,315 (GRCm39) missense probably damaging 0.98
IGL02476:Chd1 APN 17 15,954,535 (GRCm39) missense probably damaging 1.00
IGL02756:Chd1 APN 17 15,951,069 (GRCm39) missense probably damaging 0.97
IGL02817:Chd1 APN 17 15,969,762 (GRCm39) missense possibly damaging 0.92
IGL03084:Chd1 APN 17 15,990,560 (GRCm39) missense probably benign 0.22
IGL03108:Chd1 APN 17 15,945,543 (GRCm39) missense possibly damaging 0.70
Holly UTSW 17 15,946,545 (GRCm39) missense possibly damaging 0.72
R0053:Chd1 UTSW 17 15,967,451 (GRCm39) missense probably damaging 1.00
R0053:Chd1 UTSW 17 15,967,451 (GRCm39) missense probably damaging 1.00
R0128:Chd1 UTSW 17 17,613,829 (GRCm39) missense probably damaging 1.00
R0197:Chd1 UTSW 17 15,945,693 (GRCm39) missense probably benign
R0285:Chd1 UTSW 17 17,594,942 (GRCm39) splice site probably benign
R0326:Chd1 UTSW 17 15,988,830 (GRCm39) missense probably benign
R0326:Chd1 UTSW 17 15,988,828 (GRCm39) missense probably damaging 1.00
R0372:Chd1 UTSW 17 17,607,552 (GRCm39) missense probably benign 0.14
R0391:Chd1 UTSW 17 15,970,156 (GRCm39) missense probably damaging 1.00
R0486:Chd1 UTSW 17 15,954,604 (GRCm39) missense probably damaging 0.99
R0637:Chd1 UTSW 17 15,962,550 (GRCm39) missense possibly damaging 0.50
R0675:Chd1 UTSW 17 15,978,523 (GRCm39) unclassified probably benign
R0701:Chd1 UTSW 17 15,945,693 (GRCm39) missense probably benign
R0788:Chd1 UTSW 17 15,927,376 (GRCm39) missense possibly damaging 0.86
R0848:Chd1 UTSW 17 15,990,503 (GRCm39) missense probably damaging 1.00
R0883:Chd1 UTSW 17 15,945,693 (GRCm39) missense probably benign
R1169:Chd1 UTSW 17 15,955,994 (GRCm39) missense probably damaging 1.00
R1218:Chd1 UTSW 17 15,945,574 (GRCm39) missense probably damaging 1.00
R1370:Chd1 UTSW 17 17,607,742 (GRCm39) missense probably benign 0.00
R1470:Chd1 UTSW 17 15,946,545 (GRCm39) missense possibly damaging 0.72
R1470:Chd1 UTSW 17 15,946,545 (GRCm39) missense possibly damaging 0.72
R1478:Chd1 UTSW 17 15,959,769 (GRCm39) missense probably damaging 0.99
R1752:Chd1 UTSW 17 15,963,494 (GRCm39) critical splice donor site probably null
R1759:Chd1 UTSW 17 17,607,533 (GRCm39) missense probably benign 0.00
R1767:Chd1 UTSW 17 15,990,565 (GRCm39) missense probably damaging 1.00
R1938:Chd1 UTSW 17 15,982,748 (GRCm39) missense probably benign 0.39
R2007:Chd1 UTSW 17 15,951,268 (GRCm39) missense probably damaging 1.00
R2069:Chd1 UTSW 17 15,962,556 (GRCm39) missense probably damaging 1.00
R3771:Chd1 UTSW 17 17,594,913 (GRCm39) missense probably damaging 1.00
R3773:Chd1 UTSW 17 17,594,913 (GRCm39) missense probably damaging 1.00
R3849:Chd1 UTSW 17 15,952,133 (GRCm39) missense probably damaging 1.00
R4241:Chd1 UTSW 17 15,990,289 (GRCm39) nonsense probably null
R4242:Chd1 UTSW 17 15,990,289 (GRCm39) nonsense probably null
R4354:Chd1 UTSW 17 17,610,263 (GRCm39) missense probably benign 0.23
R4468:Chd1 UTSW 17 15,980,657 (GRCm39) missense probably damaging 0.99
R4469:Chd1 UTSW 17 15,980,657 (GRCm39) missense probably damaging 0.99
R4731:Chd1 UTSW 17 17,598,079 (GRCm39) missense probably benign 0.36
R4824:Chd1 UTSW 17 15,953,386 (GRCm39) missense probably damaging 1.00
R4840:Chd1 UTSW 17 15,989,016 (GRCm39) missense probably damaging 1.00
R4880:Chd1 UTSW 17 17,594,916 (GRCm39) missense probably damaging 1.00
R4960:Chd1 UTSW 17 15,962,493 (GRCm39) missense probably damaging 0.96
R5071:Chd1 UTSW 17 15,982,667 (GRCm39) missense probably benign
R5078:Chd1 UTSW 17 15,946,616 (GRCm39) missense possibly damaging 0.93
R5114:Chd1 UTSW 17 15,948,460 (GRCm39) missense probably benign 0.25
R5268:Chd1 UTSW 17 15,956,005 (GRCm39) missense probably damaging 1.00
R5304:Chd1 UTSW 17 15,990,530 (GRCm39) missense possibly damaging 0.55
R5304:Chd1 UTSW 17 15,975,213 (GRCm39) missense probably benign 0.01
R5307:Chd1 UTSW 17 15,952,832 (GRCm39) missense probably damaging 1.00
R5458:Chd1 UTSW 17 15,958,811 (GRCm39) missense probably damaging 1.00
R5553:Chd1 UTSW 17 17,605,875 (GRCm39) missense probably benign 0.17
R5623:Chd1 UTSW 17 15,975,194 (GRCm39) missense probably damaging 1.00
R6022:Chd1 UTSW 17 17,598,035 (GRCm39) missense probably benign 0.39
R6137:Chd1 UTSW 17 15,978,950 (GRCm39) missense probably damaging 1.00
R6257:Chd1 UTSW 17 15,950,465 (GRCm39) splice site probably null
R6373:Chd1 UTSW 17 15,958,898 (GRCm39) missense probably damaging 1.00
R6458:Chd1 UTSW 17 15,950,864 (GRCm39) missense probably benign 0.01
R6476:Chd1 UTSW 17 17,601,250 (GRCm39) critical splice donor site probably null
R6508:Chd1 UTSW 17 15,958,895 (GRCm39) missense probably benign 0.31
R6553:Chd1 UTSW 17 15,945,692 (GRCm39) missense probably benign 0.00
R6745:Chd1 UTSW 17 17,607,429 (GRCm39) missense probably benign 0.08
R7107:Chd1 UTSW 17 15,981,628 (GRCm39) missense probably damaging 0.98
R7230:Chd1 UTSW 17 15,927,199 (GRCm39) splice site probably null
R7317:Chd1 UTSW 17 15,962,536 (GRCm39) missense possibly damaging 0.71
R7341:Chd1 UTSW 17 15,990,499 (GRCm39) missense probably damaging 0.99
R7421:Chd1 UTSW 17 15,969,660 (GRCm39) missense probably benign 0.03
R7704:Chd1 UTSW 17 15,987,737 (GRCm39) missense probably benign
R7763:Chd1 UTSW 17 15,953,303 (GRCm39) missense probably damaging 1.00
R8156:Chd1 UTSW 17 15,981,666 (GRCm39) missense probably benign
R8194:Chd1 UTSW 17 17,594,737 (GRCm39) start gained probably benign
R8261:Chd1 UTSW 17 17,607,804 (GRCm39) missense probably benign 0.02
R8338:Chd1 UTSW 17 15,990,242 (GRCm39) missense probably damaging 1.00
R8401:Chd1 UTSW 17 15,963,473 (GRCm39) missense probably damaging 1.00
R8411:Chd1 UTSW 17 15,982,711 (GRCm39) missense probably damaging 0.98
R9067:Chd1 UTSW 17 15,951,107 (GRCm39) missense possibly damaging 0.49
R9184:Chd1 UTSW 17 15,962,551 (GRCm39) missense possibly damaging 0.71
R9210:Chd1 UTSW 17 15,950,767 (GRCm39) missense possibly damaging 0.70
R9212:Chd1 UTSW 17 15,950,767 (GRCm39) missense possibly damaging 0.70
R9666:Chd1 UTSW 17 15,955,976 (GRCm39) missense probably damaging 1.00
R9673:Chd1 UTSW 17 15,989,023 (GRCm39) missense probably benign 0.24
Z1176:Chd1 UTSW 17 15,988,995 (GRCm39) missense probably damaging 1.00
Z1176:Chd1 UTSW 17 15,986,609 (GRCm39) missense probably damaging 0.98
Z1177:Chd1 UTSW 17 15,968,063 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TTGGGCAGGAGTTACTGTTATTA -3'
(R):5'- TTCCACCAACAAGCTGCACT -3'

Sequencing Primer
(F):5'- AGTAGCAGGGACAGCTAT -3'
(R):5'- CCAACAAGCTGCACTATTTAAAATG -3'
Posted On 2016-03-01