Mutagenetix > Incidental Mutations

Incidental Mutation 'R0239:Krt17'

37222

Institutional Source

Beutler Lab

Gene Symbol

Krt17

Ensembl Gene

ENSMUSG00000035557

Gene Name

keratin 17

Synonyms

Krt1-17, K17

MMRRC Submission

038477-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0239 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

100256217-100261029 bp(-) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 100260878 bp

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 30 (R30*)

Ref Sequence

ENSEMBL: ENSMUSP00000079699 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000017270] [ENSMUST00000080893]

Predicted Effect

probably benign
Transcript: ENSMUST00000017270

SMART Domains

Protein: ENSMUSP00000017270
Gene: ENSMUSG00000053654

Domain	Start	End	E-Value	Type
low complexity region	62	84	N/A	INTRINSIC
Filament	93	404	5.58e-184	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000080893
AA Change: R30*

SMART Domains

Protein: ENSMUSP00000079699
Gene: ENSMUSG00000035557
AA Change: R30*

Domain	Start	End	E-Value	Type
Filament	83	394	9.36e-177	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000107406

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.6%
20x: 89.9%

Validation Efficiency

100% (3/3)

MGI Phenotype

FUNCTION: The protein encoded by this gene is a member of the type I keratin gene family. The keratins are intermediate filament proteins responsible for the structural integrity of epithelial cells and are subdivided into cytokeratins and hair keratins. The encoded protein is a cytokeratin required for the normal growth of hair follicles and may act in psoriasis as an immunopathogenic autoantigen. [provided by RefSeq, Sep 2015]
PHENOTYPE: Mice homozygous for a knock-out allele display age- and strain-dependent alopecia associated with frequent absence of vibrissae, increased hair fragility, abnormal hair cycling, altered hair follicle morphology, and apoptosis in matrix cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	TTCCTCCTCCTCCTCCTCCTCC	TTCCTCCTCCTCCTCCTCC	3: 138,065,834		probably benign	Het
Adra1d	C	A	2: 131,546,214	V474F	probably benign	Het
Alg8	A	T	7: 97,383,684		probably null	Het
Ash1l	A	G	3: 89,067,222	D2618G	possibly damaging	Het
Atp6v1c2	C	A	12: 17,294,675		probably null	Het
Cacna1d	A	G	14: 30,123,496	V572A	probably benign	Het
Camta1	A	G	4: 151,143,730	W882R	probably damaging	Het
Cd72	A	G	4: 43,453,163	V91A	probably benign	Het
Cdh12	T	C	15: 21,586,407	W771R	probably damaging	Het
Cdx2	G	T	5: 147,303,287	T193K	probably damaging	Het
Cfap70	A	C	14: 20,448,605	S5A	probably benign	Het
Chmp7	A	G	14: 69,720,997	V241A	probably damaging	Het
D3Ertd751e	A	G	3: 41,753,878	Y150C	probably damaging	Het
Depdc5	T	C	5: 32,943,240	S832P	probably damaging	Het
Dnhd1	A	G	7: 105,721,531	S4673G	probably benign	Het
Dock4	G	T	12: 40,737,540	S818I	probably damaging	Het
Dysf	C	T	6: 84,064,479	Q156*	probably null	Het
Espnl	T	C	1: 91,322,287	V52A	probably damaging	Het
Flcn	T	C	11: 59,801,076	N249S	probably benign	Het
Gemin6	C	A	17: 80,225,710	A24D	probably damaging	Het
Gm5773	A	G	3: 93,774,032	H337R	probably benign	Het
Gm9733	A	G	3: 15,296,601	L163P	probably damaging	Het
Hal	T	C	10: 93,503,482	S478P	possibly damaging	Het
Hectd1	T	A	12: 51,769,318	M1324L	possibly damaging	Het
Hyal5	T	A	6: 24,876,344	L72Q	probably damaging	Het
Ift140	C	A	17: 25,045,523	C557*	probably null	Het
Ikbkap	C	A	4: 56,784,596	V466L	probably benign	Het
Kbtbd3	G	T	9: 4,330,144	V173L	possibly damaging	Het
Kif14	A	G	1: 136,527,393	E1551G	probably damaging	Het
Lamb3	A	T	1: 193,321,053	D100V	probably damaging	Het
Map2	A	G	1: 66,416,106	D1385G	probably damaging	Het
Mettl25	C	T	10: 105,826,525	V195I	probably damaging	Het
Myh8	A	G	11: 67,301,692	T1466A	probably benign	Het
Myo3b	T	A	2: 70,105,425	C61S	probably benign	Het
Nacc2	T	G	2: 26,062,261	N361T	probably damaging	Het
Nf1	A	T	11: 79,418,574	K438M	possibly damaging	Het
Nipal4	A	G	11: 46,150,441	V309A	possibly damaging	Het
Nomo1	T	C	7: 46,079,594		probably null	Het
Nubp2	T	C	17: 24,884,471	E144G	probably damaging	Het
Nwd2	A	T	5: 63,800,124	I266F	probably benign	Het
Olfr1126	T	C	2: 87,458,037	F291L	probably benign	Het
Olfr593	G	A	7: 103,212,726	V289M	possibly damaging	Het
Olfr694	A	G	7: 106,689,255	Y159H	probably benign	Het
Orc1	T	C	4: 108,595,646		probably null	Het
Otogl	T	A	10: 107,806,696	N1291I	probably damaging	Het
Pah	C	T	10: 87,567,281	P173S	possibly damaging	Het
Pga5	A	G	19: 10,669,453	Y305H	probably damaging	Het
Plekha4	A	G	7: 45,532,358	H62R	probably damaging	Het
Plxnd1	G	T	6: 115,968,793	D906E	probably benign	Het
Ppfia4	T	C	1: 134,329,189	E98G	possibly damaging	Het
Ptk2	A	T	15: 73,343,283		probably null	Het
Raet1e	C	A	10: 22,180,862	H112Q	possibly damaging	Het
Scai	T	A	2: 39,075,042	I597F	probably benign	Het
Slc35c2	C	T	2: 165,280,837	G176S	probably damaging	Het
Slc35f4	A	T	14: 49,304,256	I347N	possibly damaging	Het
Slc52a3	T	C	2: 152,008,156	*461Q	probably null	Het
Slc6a1	G	A	6: 114,302,800	V142I	probably benign	Het
Tbc1d31	C	A	15: 57,940,753	T388N	probably benign	Het
Tmem63c	T	C	12: 87,075,639	W404R	probably damaging	Het
Tmem79	A	G	3: 88,333,321	S107P	probably benign	Het
Trip11	C	T	12: 101,884,728	E741K	probably damaging	Het
Trpm5	G	T	7: 143,082,958	T414N	probably damaging	Het
Tsnaxip1	T	A	8: 105,844,488	I660N	possibly damaging	Het
Ube2q2	T	C	9: 55,163,007	S78P	probably damaging	Het
Vac14	A	T	8: 110,635,375		probably null	Het
Vps51	G	T	19: 6,071,437	S185*	probably null	Het
Zfp11	C	T	5: 129,658,238	G53E	possibly damaging	Het
Zfp532	A	T	18: 65,682,985	I810F	possibly damaging	Het
Zfp599	C	T	9: 22,249,759	C370Y	probably damaging	Het

Other mutations in Krt17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00821:Krt17	APN	11	100260631	missense	probably damaging	1.00
IGL02291:Krt17	APN	11	100256493	missense	probably benign	0.42
IGL03392:Krt17	APN	11	100259735	missense	possibly damaging	0.73
R0189:Krt17	UTSW	11	100260619	missense	possibly damaging	0.95
R0238:Krt17	UTSW	11	100260878	nonsense	probably null
R0238:Krt17	UTSW	11	100260878	nonsense	probably null
R0239:Krt17	UTSW	11	100260878	nonsense	probably null
R1448:Krt17	UTSW	11	100257539	missense	possibly damaging	0.69
R1510:Krt17	UTSW	11	100257539	missense	possibly damaging	0.69
R4029:Krt17	UTSW	11	100257523	missense	probably damaging	1.00
R4235:Krt17	UTSW	11	100257868	missense	possibly damaging	0.90
R4888:Krt17	UTSW	11	100256479	missense	probably benign	0.06
R5281:Krt17	UTSW	11	100260701	nonsense	probably null
R7213:Krt17	UTSW	11	100258530	missense	probably benign	0.09
R7238:Krt17	UTSW	11	100257787	missense	probably benign	0.19
R7304:Krt17	UTSW	11	100257337	missense	probably benign
R7438:Krt17	UTSW	11	100258465	missense	probably damaging	1.00
R7796:Krt17	UTSW	11	100260872	missense	probably benign	0.23
Z1176:Krt17	UTSW	11	100260923	missense	probably benign	0.23
Z1177:Krt17	UTSW	11	100259196	missense	probably damaging	1.00
Z1177:Krt17	UTSW	11	100259711	missense	possibly damaging	0.86

Predicted Primers

PCR Primer
(F):5'- ACCAATCTCGGATCTTCACCTCCAG -3'
(R):5'- AGCCTGTTGTAATCGCTACGCC -3'

Sequencing Primer
(F):5'- ACGCACCTTGTCCAGGTAG -3'
(R):5'- CACTGGCTGCCCTATAAAGG -3'

Posted On

2013-05-09