Mutagenetix > Incidental Mutation

Incidental Mutation 'R4858:Casp1'

372238

Institutional Source

Beutler Lab

Gene Symbol

Casp1

Ensembl Gene

ENSMUSG00000025888

Gene Name

caspase 1

Synonyms

ICE, Il1bc, Caspase-1, interleukin 1 beta-converting enzyme

MMRRC Submission

042469-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4858 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

5298517-5307265 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 5306742 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Cysteine at position 395 (R395C)

Ref Sequence

ENSEMBL: ENSMUSP00000027015 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027012] [ENSMUST00000027015] [ENSMUST00000160064] [ENSMUST00000162846]

AlphaFold

P29452

Predicted Effect

probably benign
Transcript: ENSMUST00000027012

SMART Domains

Protein: ENSMUSP00000027012
Gene: ENSMUSG00000033538

Domain	Start	End	E-Value	Type
CARD	1	92	7.63e-7	SMART
CASc	121	371	5.72e-134	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000027015
AA Change: R395C

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000027015
Gene: ENSMUSG00000025888
AA Change: R395C

Domain	Start	End	E-Value	Type
CARD	4	89	4.91e-19	SMART
CASc	151	400	1.82e-136	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152651

Predicted Effect

probably benign
Transcript: ENSMUST00000160064

SMART Domains

Protein: ENSMUSP00000124249
Gene: ENSMUSG00000033538

Domain	Start	End	E-Value	Type
CARD	1	89	4.7e-7	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160521

Predicted Effect

probably benign
Transcript: ENSMUST00000162846

SMART Domains

Protein: ENSMUSP00000124402
Gene: ENSMUSG00000033538

Domain	Start	End	E-Value	Type
Blast:CARD	2	36	2e-17	BLAST
PDB:1IBC\|A	18	94	6e-12	PDB
SCOP:g1ibc.1	45	94	6e-15	SMART
Blast:CASc	65	94	7e-13	BLAST

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.0%
3x: 98.2%
10x: 96.0%
20x: 91.5%

Validation Efficiency

94% (103/109)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein which is a member of the cysteine-aspartic acid protease (caspase) family. Sequential activation of caspases plays a central role in the execution-phase of cell apoptosis. Caspases exist as inactive proenzymes which undergo proteolytic processing at conserved aspartic residues to produce 2 subunits, large and small, that dimerize to form the active enzyme. This gene was identified by its ability to proteolytically cleave and activate the inactive precursor of interleukin-1, a cytokine involved in the processes such as inflammation, septic shock, and wound healing. This gene has been shown to induce cell apoptosis and may function in various developmental stages. Studies of a similar gene in mouse suggest a role in the pathogenesis of Huntington disease. Alternative splicing results in transcript variants encoding distinct isoforms. [provided by RefSeq, Mar 2012]
PHENOTYPE: Homozygous targeted mutants fail to produce mature IL1A and IL1B and are resistant to LPS-induced endotoxin shock and to FAS antibody-induced apoptosis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 80 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgb	T	C	10: 10,349,577 (GRCm38)	Y1415C	probably damaging	Het
Adgrf1	T	C	17: 43,303,672 (GRCm38)	S216P	probably damaging	Het
Ankrd12	T	C	17: 66,031,433 (GRCm38)	D197G	probably damaging	Het
Aoc3	C	A	11: 101,331,662 (GRCm38)	H198Q	probably damaging	Het
Aox1	C	A	1: 58,104,481 (GRCm38)	H1253N	probably benign	Het
Arg1	T	A	10: 24,922,638 (GRCm38)	E38V	possibly damaging	Het
Baz2b	T	A	2: 59,907,743 (GRCm38)	M1741L	probably benign	Het
Bend4	T	C	5: 67,417,572 (GRCm38)	E322G	probably damaging	Het
Brpf1	T	C	6: 113,317,678 (GRCm38)	V661A	possibly damaging	Het
C2cd3	A	T	7: 100,454,953 (GRCm38)	T2058S	probably damaging	Het
Camk4	T	C	18: 33,176,213 (GRCm38)	V223A	probably damaging	Het
Ccdc180	T	G	4: 45,923,244 (GRCm38)	I1066S	probably damaging	Het
Ccne1	A	G	7: 38,099,319 (GRCm38)	F292L	probably damaging	Het
Ccz1	A	T	5: 144,012,810 (GRCm38)	M100K	probably damaging	Het
Cep128	T	C	12: 91,260,162 (GRCm38)	T678A	probably benign	Het
Cep290	G	A	10: 100,494,911 (GRCm38)	R151Q	probably benign	Het
Crip3	A	G	17: 46,430,747 (GRCm38)		probably benign	Het
Ddx60	A	G	8: 62,021,314 (GRCm38)	M1479V	possibly damaging	Het
Defb40	T	A	8: 18,975,077 (GRCm38)	I38F	probably benign	Het
Diexf	A	G	1: 193,113,764 (GRCm38)	Y686H	probably damaging	Het
Dnajb2	C	T	1: 75,243,554 (GRCm38)	T221I	possibly damaging	Het
Dpcr1	G	A	17: 35,637,576 (GRCm38)	T377I	possibly damaging	Het
Dpysl3	T	C	18: 43,334,014 (GRCm38)	I279V	probably damaging	Het
Echs1	G	A	7: 140,112,586 (GRCm38)		probably benign	Het
Efl1	T	A	7: 82,671,627 (GRCm38)	N89K	probably damaging	Het
Extl3	T	C	14: 65,075,994 (GRCm38)	T580A	probably benign	Het
Fam171a2	C	T	11: 102,440,156 (GRCm38)	G193E	probably damaging	Het
Fam234a	A	T	17: 26,216,617 (GRCm38)	D264E	probably benign	Het
Fbxw20	A	T	9: 109,234,695 (GRCm38)	V3D	possibly damaging	Het
Fig4	G	A	10: 41,233,590 (GRCm38)	P637L	probably benign	Het
Fnbp1l	G	A	3: 122,546,315 (GRCm38)	T496I	probably benign	Het
Fry	T	C	5: 150,401,643 (GRCm38)	V1175A	possibly damaging	Het
Gm5617	C	T	9: 48,495,668 (GRCm38)	A34V	possibly damaging	Het
Gnai1	A	T	5: 18,291,598 (GRCm38)	V109E	probably benign	Het
H2-K1	A	T	17: 33,997,324 (GRCm38)	Y283N	probably benign	Het
Hectd2	A	T	19: 36,605,282 (GRCm38)	I471F	probably damaging	Het
Hsdl2	T	C	4: 59,612,812 (GRCm38)		probably null	Het
Igkv3-1	T	C	6: 70,704,044 (GRCm38)	S76P	probably damaging	Het
Krt15	A	T	11: 100,132,071 (GRCm38)	S439R	probably benign	Het
Lama2	TTTGCGCATT	TTT	10: 27,043,643 (GRCm38)		probably null	Het
Lima1	G	A	15: 99,819,576 (GRCm38)	T23I	probably benign	Het
Map4k1	C	A	7: 28,988,770 (GRCm38)	H248Q	probably damaging	Het
Mcf2l	C	A	8: 13,013,972 (GRCm38)	T1004K	probably damaging	Het
Micall1	T	A	15: 79,122,946 (GRCm38)		probably benign	Het
Ms4a14	A	G	19: 11,301,612 (GRCm38)	I1194T	probably benign	Het
Mtor	T	C	4: 148,454,816 (GRCm38)	*257Q	probably null	Het
Ncan	T	A	8: 70,104,055 (GRCm38)	T961S	probably benign	Het
Olfr1100	T	G	2: 86,978,349 (GRCm38)	Y149S	probably damaging	Het
Olfr161	T	C	16: 3,592,842 (GRCm38)	S149P	probably damaging	Het
Olfr311	T	A	11: 58,841,207 (GRCm38)	L31H	possibly damaging	Het
Olfr331	T	A	11: 58,501,909 (GRCm38)	I216F	probably damaging	Het
Olfr389	T	A	11: 73,776,546 (GRCm38)	L260F	probably benign	Het
Olfr419	A	T	1: 174,250,696 (GRCm38)	I77N	probably damaging	Het
Pcdhgb2	A	G	18: 37,692,100 (GRCm38)	R715G	probably benign	Het
Pik3c3	T	C	18: 30,344,078 (GRCm38)		probably null	Het
Pkhd1l1	A	T	15: 44,491,101 (GRCm38)	D296V	probably damaging	Het
Plekhh2	A	G	17: 84,600,697 (GRCm38)	I1189V	probably damaging	Het
Psg18	A	T	7: 18,353,484 (GRCm38)	L83Q	possibly damaging	Het
Rps6kc1	A	G	1: 190,800,318 (GRCm38)	W496R	probably damaging	Het
Setd5	C	T	6: 113,149,566 (GRCm38)	T1188I	probably damaging	Het
Slc4a3	T	C	1: 75,555,085 (GRCm38)	F899L	probably damaging	Het
Slitrk6	T	C	14: 110,751,883 (GRCm38)	T131A	probably damaging	Het
Speg	G	T	1: 75,421,735 (GRCm38)	R1942L	probably damaging	Het
Sulf2	C	A	2: 166,081,604 (GRCm38)	R565L	probably benign	Het
Tcerg1	T	C	18: 42,523,981 (GRCm38)	M176T	unknown	Het
Tfcp2l1	T	C	1: 118,669,509 (GRCm38)	I440T	possibly damaging	Het
Tgm7	A	T	2: 121,098,964 (GRCm38)		probably null	Het
Tjp2	C	A	19: 24,122,120 (GRCm38)	G433V	probably damaging	Het
Tldc1	T	G	8: 119,772,523 (GRCm38)	T77P	probably benign	Het
Tmc7	C	T	7: 118,543,342 (GRCm38)	G608R	probably damaging	Het
Tmed4	A	G	11: 6,274,456 (GRCm38)	F68S	possibly damaging	Het
Tmem30b	G	A	12: 73,545,912 (GRCm38)	P143L	probably damaging	Het
Tnfrsf23	C	T	7: 143,681,480 (GRCm38)	C49Y	probably damaging	Het
Tnni3k	A	T	3: 154,786,808 (GRCm38)		probably null	Het
Trav12-2	G	T	14: 53,616,693 (GRCm38)	M41I	probably benign	Het
Trim6	T	A	7: 104,232,485 (GRCm38)	Y314*	probably null	Het
Ttc25	A	G	11: 100,550,321 (GRCm38)	N126S	probably damaging	Het
Vmn2r118	A	G	17: 55,592,894 (GRCm38)	V670A	probably damaging	Het
Zfp438	A	T	18: 5,213,154 (GRCm38)	D601E	probably benign	Het
Zfp606	T	A	7: 12,493,056 (GRCm38)	I310N	possibly damaging	Het

Other mutations in Casp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00235:Casp1	APN	9	5,299,872 (GRCm38)	splice site	probably benign
IGL00667:Casp1	APN	9	5,303,756 (GRCm38)	missense	probably benign	0.40
IGL01998:Casp1	APN	9	5,303,043 (GRCm38)	missense	probably damaging	1.00
IGL02248:Casp1	APN	9	5,299,452 (GRCm38)	missense	probably benign	0.01
IGL02469:Casp1	APN	9	5,303,105 (GRCm38)	missense	probably benign	0.19
P0027:Casp1	UTSW	9	5,299,851 (GRCm38)	missense	probably benign	0.00
PIT4305001:Casp1	UTSW	9	5,306,135 (GRCm38)	missense	probably benign	0.03
R0724:Casp1	UTSW	9	5,303,077 (GRCm38)	missense	probably benign
R1169:Casp1	UTSW	9	5,299,454 (GRCm38)	missense	possibly damaging	0.93
R1876:Casp1	UTSW	9	5,303,663 (GRCm38)	missense	probably benign	0.01
R2316:Casp1	UTSW	9	5,306,213 (GRCm38)	missense	possibly damaging	0.92
R2877:Casp1	UTSW	9	5,303,110 (GRCm38)	missense	probably damaging	1.00
R2885:Casp1	UTSW	9	5,299,851 (GRCm38)	missense	probably benign	0.00
R4043:Casp1	UTSW	9	5,302,444 (GRCm38)	missense	probably benign
R4367:Casp1	UTSW	9	5,299,333 (GRCm38)	missense	probably benign	0.41
R4656:Casp1	UTSW	9	5,304,324 (GRCm38)	missense	probably damaging	1.00
R4705:Casp1	UTSW	9	5,306,204 (GRCm38)	missense	probably damaging	1.00
R4790:Casp1	UTSW	9	5,303,020 (GRCm38)	missense	probably benign	0.01
R5607:Casp1	UTSW	9	5,303,143 (GRCm38)	missense	probably damaging	1.00
R5784:Casp1	UTSW	9	5,299,337 (GRCm38)	missense	probably damaging	0.98
R6578:Casp1	UTSW	9	5,304,280 (GRCm38)	missense	probably benign	0.04
R7111:Casp1	UTSW	9	5,299,816 (GRCm38)	missense	probably benign	0.01
R7215:Casp1	UTSW	9	5,298,523 (GRCm38)	splice site	probably null
R7590:Casp1	UTSW	9	5,306,710 (GRCm38)	missense	probably damaging	1.00
R8002:Casp1	UTSW	9	5,303,164 (GRCm38)	missense	possibly damaging	0.94
R8510:Casp1	UTSW	9	5,303,026 (GRCm38)	missense	probably damaging	1.00
R8902:Casp1	UTSW	9	5,299,333 (GRCm38)	missense	probably benign	0.41
R9234:Casp1	UTSW	9	5,303,128 (GRCm38)	missense	probably benign	0.04
R9471:Casp1	UTSW	9	5,304,187 (GRCm38)	missense	probably benign	0.13
R9747:Casp1	UTSW	9	5,299,322 (GRCm38)	missense	probably damaging	1.00
T0722:Casp1	UTSW	9	5,299,851 (GRCm38)	missense	probably benign	0.00
X0003:Casp1	UTSW	9	5,299,851 (GRCm38)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TGGGCCCATCATATTTGTCAG -3'
(R):5'- ACCAAATGTAGAAACTTGGATCAGG -3'

Sequencing Primer
(F):5'- GGCCCATCATATTTGTCAGCTACAG -3'
(R):5'- ACTTGGATCAGGATCAGTTGTTTAC -3'

Posted On

2016-03-01