Mutagenetix > Incidental Mutation

Incidental Mutation 'R0239:Gemin6'

37238

Institutional Source

Beutler Lab

Gene Symbol

Gemin6

Ensembl Gene

ENSMUSG00000055760

Gene Name

gem nuclear organelle associated protein 6

Synonyms

MMRRC Submission

038477-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.745) question?

Stock #

R0239 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

80224441-80228497 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 80225710 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Aspartic acid at position 24 (A24D)

Ref Sequence

ENSEMBL: ENSMUSP00000063554 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000069486]

AlphaFold

Q9CX53

Predicted Effect

probably damaging
Transcript: ENSMUST00000069486
AA Change: A24D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000063554
Gene: ENSMUSG00000055760
AA Change: A24D

Domain	Start	End	E-Value	Type
Pfam:Gemin6	1	166	9.7e-102	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156869

Meta Mutation Damage Score

0.7247

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.6%
20x: 89.9%

Validation Efficiency

100% (3/3)

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	TTCCTCCTCCTCCTCCTCCTCC	TTCCTCCTCCTCCTCCTCC	3: 138,065,834 (GRCm38)		probably benign	Het
Adra1d	C	A	2: 131,546,214 (GRCm38)	V474F	probably benign	Het
Alg8	A	T	7: 97,383,684 (GRCm38)		probably null	Het
Ash1l	A	G	3: 89,067,222 (GRCm38)	D2618G	possibly damaging	Het
Atp6v1c2	C	A	12: 17,294,675 (GRCm38)		probably null	Het
Cacna1d	A	G	14: 30,123,496 (GRCm38)	V572A	probably benign	Het
Camta1	A	G	4: 151,143,730 (GRCm38)	W882R	probably damaging	Het
Cd72	A	G	4: 43,453,163 (GRCm38)	V91A	probably benign	Het
Cdh12	T	C	15: 21,586,407 (GRCm38)	W771R	probably damaging	Het
Cdx2	G	T	5: 147,303,287 (GRCm38)	T193K	probably damaging	Het
Cfap70	A	C	14: 20,448,605 (GRCm38)	S5A	probably benign	Het
Chmp7	A	G	14: 69,720,997 (GRCm38)	V241A	probably damaging	Het
D3Ertd751e	A	G	3: 41,753,878 (GRCm38)	Y150C	probably damaging	Het
Depdc5	T	C	5: 32,943,240 (GRCm38)	S832P	probably damaging	Het
Dnhd1	A	G	7: 105,721,531 (GRCm38)	S4673G	probably benign	Het
Dock4	G	T	12: 40,737,540 (GRCm38)	S818I	probably damaging	Het
Dysf	C	T	6: 84,064,479 (GRCm38)	Q156*	probably null	Het
Elp1	C	A	4: 56,784,596 (GRCm38)	V466L	probably benign	Het
Espnl	T	C	1: 91,322,287 (GRCm38)	V52A	probably damaging	Het
Flcn	T	C	11: 59,801,076 (GRCm38)	N249S	probably benign	Het
Gm5773	A	G	3: 93,774,032 (GRCm38)	H337R	probably benign	Het
Hal	T	C	10: 93,503,482 (GRCm38)	S478P	possibly damaging	Het
Hectd1	T	A	12: 51,769,318 (GRCm38)	M1324L	possibly damaging	Het
Hyal5	T	A	6: 24,876,344 (GRCm38)	L72Q	probably damaging	Het
Ift140	C	A	17: 25,045,523 (GRCm38)	C557*	probably null	Het
Kbtbd3	G	T	9: 4,330,144 (GRCm38)	V173L	possibly damaging	Het
Kif14	A	G	1: 136,527,393 (GRCm38)	E1551G	probably damaging	Het
Krt17	G	A	11: 100,260,878 (GRCm38)	R30*	probably null	Het
Lamb3	A	T	1: 193,321,053 (GRCm38)	D100V	probably damaging	Het
Map2	A	G	1: 66,416,106 (GRCm38)	D1385G	probably damaging	Het
Mettl25	C	T	10: 105,826,525 (GRCm38)	V195I	probably damaging	Het
Myh8	A	G	11: 67,301,692 (GRCm38)	T1466A	probably benign	Het
Myo3b	T	A	2: 70,105,425 (GRCm38)	C61S	probably benign	Het
Nacc2	T	G	2: 26,062,261 (GRCm38)	N361T	probably damaging	Het
Nf1	A	T	11: 79,418,574 (GRCm38)	K438M	possibly damaging	Het
Nipal4	A	G	11: 46,150,441 (GRCm38)	V309A	possibly damaging	Het
Nomo1	T	C	7: 46,079,594 (GRCm38)		probably null	Het
Nubp2	T	C	17: 24,884,471 (GRCm38)	E144G	probably damaging	Het
Nwd2	A	T	5: 63,800,124 (GRCm38)	I266F	probably benign	Het
Or12e7	T	C	2: 87,458,037 (GRCm38)	F291L	probably benign	Het
Or2ag1b	A	G	7: 106,689,255 (GRCm38)	Y159H	probably benign	Het
Or52s1	G	A	7: 103,212,726 (GRCm38)	V289M	possibly damaging	Het
Orc1	T	C	4: 108,595,646 (GRCm38)		probably null	Het
Otogl	T	A	10: 107,806,696 (GRCm38)	N1291I	probably damaging	Het
Pah	C	T	10: 87,567,281 (GRCm38)	P173S	possibly damaging	Het
Pga5	A	G	19: 10,669,453 (GRCm38)	Y305H	probably damaging	Het
Plekha4	A	G	7: 45,532,358 (GRCm38)	H62R	probably damaging	Het
Plxnd1	G	T	6: 115,968,793 (GRCm38)	D906E	probably benign	Het
Ppfia4	T	C	1: 134,329,189 (GRCm38)	E98G	possibly damaging	Het
Ptk2	A	T	15: 73,343,283 (GRCm38)		probably null	Het
Raet1e	C	A	10: 22,180,862 (GRCm38)	H112Q	possibly damaging	Het
Scai	T	A	2: 39,075,042 (GRCm38)	I597F	probably benign	Het
Sirpd	A	G	3: 15,296,601 (GRCm38)	L163P	probably damaging	Het
Slc35c2	C	T	2: 165,280,837 (GRCm38)	G176S	probably damaging	Het
Slc35f4	A	T	14: 49,304,256 (GRCm38)	I347N	possibly damaging	Het
Slc52a3	T	C	2: 152,008,156 (GRCm38)	*461Q	probably null	Het
Slc6a1	G	A	6: 114,302,800 (GRCm38)	V142I	probably benign	Het
Tbc1d31	C	A	15: 57,940,753 (GRCm38)	T388N	probably benign	Het
Tmem63c	T	C	12: 87,075,639 (GRCm38)	W404R	probably damaging	Het
Tmem79	A	G	3: 88,333,321 (GRCm38)	S107P	probably benign	Het
Trip11	C	T	12: 101,884,728 (GRCm38)	E741K	probably damaging	Het
Trpm5	G	T	7: 143,082,958 (GRCm38)	T414N	probably damaging	Het
Tsnaxip1	T	A	8: 105,844,488 (GRCm38)	I660N	possibly damaging	Het
Ube2q2	T	C	9: 55,163,007 (GRCm38)	S78P	probably damaging	Het
Vac14	A	T	8: 110,635,375 (GRCm38)		probably null	Het
Vps51	G	T	19: 6,071,437 (GRCm38)	S185*	probably null	Het
Zfp11	C	T	5: 129,658,238 (GRCm38)	G53E	possibly damaging	Het
Zfp532	A	T	18: 65,682,985 (GRCm38)	I810F	possibly damaging	Het
Zfp599	C	T	9: 22,249,759 (GRCm38)	C370Y	probably damaging	Het

Other mutations in Gemin6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00953:Gemin6	APN	17	80,227,865 (GRCm38)	missense	possibly damaging	0.56
IGL02129:Gemin6	APN	17	80,227,926 (GRCm38)	missense	probably damaging	1.00
R0197:Gemin6	UTSW	17	80,228,095 (GRCm38)	missense	probably damaging	1.00
R0239:Gemin6	UTSW	17	80,225,710 (GRCm38)	missense	probably damaging	1.00
R0883:Gemin6	UTSW	17	80,228,095 (GRCm38)	missense	probably damaging	1.00
R1995:Gemin6	UTSW	17	80,227,985 (GRCm38)	missense	probably damaging	1.00
R4570:Gemin6	UTSW	17	80,228,069 (GRCm38)	nonsense	probably null
R4885:Gemin6	UTSW	17	80,227,898 (GRCm38)	missense	probably damaging	0.99
R5335:Gemin6	UTSW	17	80,225,755 (GRCm38)	missense	probably damaging	1.00
R5445:Gemin6	UTSW	17	80,227,749 (GRCm38)	missense	probably damaging	0.98
R5447:Gemin6	UTSW	17	80,227,749 (GRCm38)	missense	probably damaging	0.98
R5451:Gemin6	UTSW	17	80,227,749 (GRCm38)	missense	probably damaging	0.98
R5452:Gemin6	UTSW	17	80,227,749 (GRCm38)	missense	probably damaging	0.98
R5522:Gemin6	UTSW	17	80,227,749 (GRCm38)	missense	probably damaging	0.98
R5525:Gemin6	UTSW	17	80,227,749 (GRCm38)	missense	probably damaging	0.98
R5526:Gemin6	UTSW	17	80,227,749 (GRCm38)	missense	probably damaging	0.98
R7291:Gemin6	UTSW	17	80,227,775 (GRCm38)	missense	possibly damaging	0.61
R7576:Gemin6	UTSW	17	80,225,726 (GRCm38)	nonsense	probably null
R7845:Gemin6	UTSW	17	80,225,661 (GRCm38)	missense	probably benign	0.00
R8842:Gemin6	UTSW	17	80,225,686 (GRCm38)	missense	possibly damaging	0.88
R8862:Gemin6	UTSW	17	80,228,003 (GRCm38)	missense	probably damaging	1.00
R9203:Gemin6	UTSW	17	80,227,808 (GRCm38)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AGACGGCACACTATGTTACCAGGC -3'
(R):5'- ACAGCAGCAGTTAGGCTCAAAAGC -3'

Sequencing Primer
(F):5'- agagcactgactgctattcc -3'
(R):5'- GCAATTATTATGTGTGAATGACCAG -3'

Posted On

2013-05-09