Incidental Mutation 'R4849:Slit1'
ID |
373434 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Slit1
|
Ensembl Gene |
ENSMUSG00000025020 |
Gene Name |
slit guidance ligand 1 |
Synonyms |
Slil1 |
MMRRC Submission |
042461-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R4849 (G1)
|
Quality Score |
122 |
Status
|
Validated
|
Chromosome |
19 |
Chromosomal Location |
41588696-41732104 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
G to T
at 41637983 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Alanine to Glutamic Acid
at position 270
(A270E)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000128381
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000025993]
[ENSMUST00000166496]
[ENSMUST00000169141]
[ENSMUST00000171586]
|
AlphaFold |
Q80TR4 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000025993
AA Change: A270E
PolyPhen 2
Score 0.053 (Sensitivity: 0.94; Specificity: 0.84)
|
SMART Domains |
Protein: ENSMUSP00000025993 Gene: ENSMUSG00000025020 AA Change: A270E
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
32 |
N/A |
INTRINSIC |
LRRNT
|
33 |
65 |
5.68e-9 |
SMART |
LRR
|
59 |
83 |
4.58e1 |
SMART |
LRR
|
84 |
107 |
4.7e0 |
SMART |
LRR_TYP
|
108 |
131 |
1.95e-3 |
SMART |
LRR
|
133 |
155 |
6.05e0 |
SMART |
LRR
|
157 |
179 |
3.98e1 |
SMART |
LRR_TYP
|
180 |
203 |
3.44e-4 |
SMART |
LRRCT
|
215 |
264 |
3.51e-6 |
SMART |
LRRNT
|
281 |
313 |
3e-8 |
SMART |
LRR
|
307 |
331 |
6.41e1 |
SMART |
LRR_TYP
|
332 |
355 |
8.22e-2 |
SMART |
LRR_TYP
|
356 |
379 |
9.08e-4 |
SMART |
LRR
|
380 |
403 |
2.82e0 |
SMART |
LRR_TYP
|
404 |
427 |
5.42e-2 |
SMART |
LRRCT
|
439 |
488 |
5.78e-7 |
SMART |
LRRNT
|
512 |
544 |
1.04e-7 |
SMART |
LRR_TYP
|
564 |
587 |
3.39e-3 |
SMART |
LRR
|
589 |
611 |
2.08e1 |
SMART |
LRR_TYP
|
612 |
635 |
1.56e-2 |
SMART |
LRR_TYP
|
636 |
659 |
4.11e-2 |
SMART |
LRRCT
|
671 |
720 |
2.89e-7 |
SMART |
LRRNT
|
733 |
765 |
4.87e-8 |
SMART |
LRR
|
783 |
806 |
1.22e1 |
SMART |
LRR_TYP
|
807 |
830 |
9.73e-4 |
SMART |
LRR_TYP
|
831 |
854 |
9.58e-3 |
SMART |
LRRCT
|
866 |
915 |
5.6e-14 |
SMART |
EGF
|
928 |
962 |
5.08e-7 |
SMART |
EGF
|
967 |
1003 |
1.74e-5 |
SMART |
EGF_CA
|
1005 |
1041 |
1.05e-8 |
SMART |
EGF
|
1046 |
1081 |
1.21e-4 |
SMART |
EGF_CA
|
1083 |
1119 |
3.64e-8 |
SMART |
FOLN
|
1086 |
1108 |
8.44e0 |
SMART |
FOLN
|
1127 |
1149 |
1.4e0 |
SMART |
EGF
|
1127 |
1160 |
1.78e-2 |
SMART |
LamG
|
1183 |
1319 |
4.43e-38 |
SMART |
EGF
|
1338 |
1371 |
6.76e-3 |
SMART |
EGF
|
1377 |
1410 |
3.38e-3 |
SMART |
FOLN
|
1418 |
1440 |
2.25e1 |
SMART |
EGF
|
1418 |
1451 |
1.28e-3 |
SMART |
CT
|
1462 |
1531 |
3.15e-4 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000166496
AA Change: A270E
PolyPhen 2
Score 0.170 (Sensitivity: 0.92; Specificity: 0.87)
|
SMART Domains |
Protein: ENSMUSP00000128381 Gene: ENSMUSG00000025020 AA Change: A270E
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
32 |
N/A |
INTRINSIC |
LRRNT
|
33 |
65 |
5.68e-9 |
SMART |
LRR
|
59 |
83 |
4.58e1 |
SMART |
LRR
|
84 |
107 |
4.7e0 |
SMART |
LRR_TYP
|
108 |
131 |
1.95e-3 |
SMART |
LRR
|
133 |
155 |
6.05e0 |
SMART |
LRR
|
157 |
179 |
3.98e1 |
SMART |
LRR_TYP
|
180 |
203 |
3.44e-4 |
SMART |
LRRCT
|
215 |
264 |
3.51e-6 |
SMART |
LRRNT
|
281 |
313 |
3e-8 |
SMART |
LRR
|
307 |
331 |
6.41e1 |
SMART |
LRR_TYP
|
332 |
355 |
8.22e-2 |
SMART |
LRR_TYP
|
356 |
379 |
9.08e-4 |
SMART |
LRR
|
380 |
403 |
2.82e0 |
SMART |
LRR_TYP
|
404 |
427 |
5.42e-2 |
SMART |
LRRCT
|
439 |
488 |
5.78e-7 |
SMART |
LRRNT
|
512 |
544 |
1.04e-7 |
SMART |
LRR_TYP
|
564 |
587 |
3.39e-3 |
SMART |
LRR
|
589 |
611 |
2.08e1 |
SMART |
LRR_TYP
|
612 |
635 |
1.56e-2 |
SMART |
LRR_TYP
|
636 |
659 |
4.11e-2 |
SMART |
LRRCT
|
671 |
720 |
2.89e-7 |
SMART |
LRRNT
|
733 |
765 |
4.87e-8 |
SMART |
LRR
|
783 |
806 |
1.22e1 |
SMART |
LRR_TYP
|
807 |
830 |
9.73e-4 |
SMART |
LRR_TYP
|
831 |
854 |
9.58e-3 |
SMART |
LRRCT
|
866 |
915 |
5.6e-14 |
SMART |
EGF
|
928 |
962 |
5.08e-7 |
SMART |
EGF
|
967 |
1003 |
1.74e-5 |
SMART |
EGF_CA
|
1005 |
1041 |
1.05e-8 |
SMART |
EGF
|
1046 |
1081 |
1.21e-4 |
SMART |
EGF_CA
|
1083 |
1119 |
3.64e-8 |
SMART |
FOLN
|
1086 |
1108 |
8.44e0 |
SMART |
FOLN
|
1127 |
1149 |
1.4e0 |
SMART |
EGF
|
1127 |
1160 |
1.78e-2 |
SMART |
LamG
|
1183 |
1319 |
4.43e-38 |
SMART |
EGF
|
1338 |
1371 |
6.76e-3 |
SMART |
EGF
|
1377 |
1410 |
3.38e-3 |
SMART |
low complexity region
|
1437 |
1458 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000169141
AA Change: A270E
PolyPhen 2
Score 0.030 (Sensitivity: 0.95; Specificity: 0.82)
|
SMART Domains |
Protein: ENSMUSP00000129034 Gene: ENSMUSG00000025020 AA Change: A270E
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
32 |
N/A |
INTRINSIC |
LRRNT
|
33 |
65 |
5.68e-9 |
SMART |
LRR
|
59 |
83 |
4.58e1 |
SMART |
LRR
|
84 |
107 |
4.7e0 |
SMART |
LRR_TYP
|
108 |
131 |
1.95e-3 |
SMART |
LRR
|
133 |
155 |
6.05e0 |
SMART |
LRR
|
157 |
179 |
3.98e1 |
SMART |
LRR_TYP
|
180 |
203 |
3.44e-4 |
SMART |
LRRCT
|
215 |
264 |
3.51e-6 |
SMART |
LRRNT
|
281 |
313 |
3e-8 |
SMART |
LRR
|
307 |
331 |
6.41e1 |
SMART |
LRR_TYP
|
332 |
355 |
8.22e-2 |
SMART |
LRR_TYP
|
356 |
379 |
9.08e-4 |
SMART |
LRR
|
380 |
403 |
2.82e0 |
SMART |
LRR_TYP
|
404 |
427 |
5.42e-2 |
SMART |
LRRCT
|
439 |
488 |
5.78e-7 |
SMART |
LRRNT
|
512 |
544 |
1.04e-7 |
SMART |
LRR_TYP
|
564 |
587 |
3.39e-3 |
SMART |
LRR
|
589 |
611 |
2.08e1 |
SMART |
LRR_TYP
|
612 |
635 |
1.56e-2 |
SMART |
LRR_TYP
|
636 |
659 |
4.11e-2 |
SMART |
LRRCT
|
671 |
720 |
2.89e-7 |
SMART |
LRRNT
|
733 |
765 |
4.87e-8 |
SMART |
LRR
|
783 |
806 |
1.22e1 |
SMART |
LRR_TYP
|
807 |
830 |
9.73e-4 |
SMART |
LRR_TYP
|
831 |
854 |
9.58e-3 |
SMART |
LRRCT
|
866 |
915 |
5.6e-14 |
SMART |
EGF
|
928 |
962 |
5.08e-7 |
SMART |
EGF
|
967 |
1003 |
1.74e-5 |
SMART |
EGF_CA
|
1005 |
1041 |
1.05e-8 |
SMART |
EGF
|
1046 |
1081 |
1.21e-4 |
SMART |
EGF_CA
|
1083 |
1119 |
3.64e-8 |
SMART |
FOLN
|
1086 |
1108 |
8.44e0 |
SMART |
FOLN
|
1127 |
1149 |
1.4e0 |
SMART |
EGF
|
1127 |
1160 |
1.78e-2 |
SMART |
LamG
|
1183 |
1319 |
4.43e-38 |
SMART |
EGF
|
1338 |
1371 |
6.76e-3 |
SMART |
EGF
|
1377 |
1410 |
3.38e-3 |
SMART |
FOLN
|
1418 |
1440 |
2.25e1 |
SMART |
EGF
|
1418 |
1451 |
1.28e-3 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000171586
AA Change: A246E
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
SMART Domains |
Protein: ENSMUSP00000126139 Gene: ENSMUSG00000025020 AA Change: A246E
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
32 |
N/A |
INTRINSIC |
LRRNT
|
33 |
65 |
5.68e-9 |
SMART |
LRR
|
59 |
83 |
4.58e1 |
SMART |
LRR
|
84 |
107 |
4.7e0 |
SMART |
LRR_TYP
|
108 |
131 |
2.24e-3 |
SMART |
LRR
|
133 |
155 |
3.98e1 |
SMART |
LRR_TYP
|
156 |
179 |
3.44e-4 |
SMART |
LRRCT
|
191 |
240 |
3.51e-6 |
SMART |
LRRNT
|
257 |
289 |
3e-8 |
SMART |
LRR
|
283 |
307 |
6.41e1 |
SMART |
LRR_TYP
|
308 |
331 |
8.22e-2 |
SMART |
LRR_TYP
|
332 |
355 |
9.08e-4 |
SMART |
LRR
|
356 |
379 |
2.82e0 |
SMART |
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 96.9%
- 20x: 94.2%
|
Validation Efficiency |
98% (90/92) |
MGI Phenotype |
PHENOTYPE: Mice homozygous for a reporter allele exhibit normal interneuron numbers and morphology. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 82 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Acp7 |
G |
T |
7: 28,314,877 (GRCm39) |
R239S |
possibly damaging |
Het |
Angptl1 |
C |
A |
1: 156,684,735 (GRCm39) |
N301K |
probably benign |
Het |
Ankrd26 |
T |
A |
6: 118,509,257 (GRCm39) |
T603S |
probably benign |
Het |
App |
T |
C |
16: 84,853,322 (GRCm39) |
D252G |
unknown |
Het |
Atxn3 |
A |
G |
12: 101,900,627 (GRCm39) |
S219P |
probably benign |
Het |
Birc6 |
T |
C |
17: 74,954,383 (GRCm39) |
S3397P |
probably damaging |
Het |
Bivm |
A |
G |
1: 44,182,033 (GRCm39) |
I414V |
possibly damaging |
Het |
Cemip |
A |
G |
7: 83,584,945 (GRCm39) |
F1324L |
possibly damaging |
Het |
Ckap5 |
T |
A |
2: 91,445,616 (GRCm39) |
N1724K |
probably damaging |
Het |
Corin |
T |
A |
5: 72,460,178 (GRCm39) |
M1035L |
probably damaging |
Het |
Ctnna3 |
T |
C |
10: 64,709,094 (GRCm39) |
I711T |
probably damaging |
Het |
Cts6 |
A |
T |
13: 61,349,415 (GRCm39) |
W98R |
probably null |
Het |
Dip2a |
A |
G |
10: 76,130,367 (GRCm39) |
S580P |
probably damaging |
Het |
Dock6 |
A |
G |
9: 21,723,068 (GRCm39) |
|
probably null |
Het |
Dusp15 |
T |
A |
2: 152,791,002 (GRCm39) |
T32S |
probably damaging |
Het |
Eogt |
T |
A |
6: 97,093,016 (GRCm39) |
N387I |
probably damaging |
Het |
Evx2 |
T |
C |
2: 74,489,675 (GRCm39) |
D29G |
probably benign |
Het |
Fat1 |
A |
G |
8: 45,466,007 (GRCm39) |
N1422S |
probably benign |
Het |
Fat2 |
T |
C |
11: 55,201,463 (GRCm39) |
D537G |
probably damaging |
Het |
Fat3 |
A |
C |
9: 16,289,244 (GRCm39) |
I93S |
probably benign |
Het |
Fem1b |
T |
C |
9: 62,704,576 (GRCm39) |
E228G |
probably damaging |
Het |
Fh1 |
A |
G |
1: 175,448,072 (GRCm39) |
T25A |
probably benign |
Het |
Fndc3b |
A |
G |
3: 27,514,097 (GRCm39) |
W695R |
probably damaging |
Het |
Gaa |
G |
A |
11: 119,163,813 (GRCm39) |
V222I |
possibly damaging |
Het |
Ggnbp1 |
T |
C |
17: 27,251,947 (GRCm39) |
|
probably null |
Het |
Gipc1 |
A |
G |
8: 84,388,756 (GRCm39) |
Y154C |
probably benign |
Het |
Gm5356 |
G |
T |
8: 89,913,670 (GRCm39) |
|
noncoding transcript |
Het |
Gnl1 |
T |
A |
17: 36,298,603 (GRCm39) |
|
probably null |
Het |
Gpcpd1 |
C |
T |
2: 132,376,019 (GRCm39) |
G605R |
probably damaging |
Het |
Guca1a |
T |
C |
17: 47,705,662 (GRCm39) |
T177A |
possibly damaging |
Het |
Ifit1bl1 |
T |
C |
19: 34,572,076 (GRCm39) |
E127G |
probably damaging |
Het |
Ift81 |
A |
T |
5: 122,729,282 (GRCm39) |
I350N |
probably damaging |
Het |
Ikbke |
GCC |
G |
1: 131,203,004 (GRCm39) |
|
probably null |
Het |
Ing4 |
A |
G |
6: 125,020,946 (GRCm39) |
R23G |
probably damaging |
Het |
Ins1 |
A |
G |
19: 52,253,384 (GRCm39) |
N108S |
probably damaging |
Het |
Iqce |
A |
T |
5: 140,679,214 (GRCm39) |
M72K |
possibly damaging |
Het |
Itga3 |
C |
A |
11: 94,967,097 (GRCm39) |
M22I |
probably benign |
Het |
Kctd18 |
T |
C |
1: 58,001,152 (GRCm39) |
E201G |
probably damaging |
Het |
Klc1 |
A |
G |
12: 111,748,129 (GRCm39) |
N344S |
probably damaging |
Het |
Klrb1f |
A |
T |
6: 129,033,347 (GRCm39) |
I192F |
probably damaging |
Het |
Klrg2 |
A |
T |
6: 38,607,214 (GRCm39) |
|
probably null |
Het |
Kntc1 |
A |
C |
5: 123,897,128 (GRCm39) |
I164L |
probably benign |
Het |
Ltf |
T |
A |
9: 110,855,058 (GRCm39) |
I357K |
probably benign |
Het |
Mr1 |
T |
C |
1: 155,006,436 (GRCm39) |
T304A |
probably benign |
Het |
Msh6 |
C |
T |
17: 88,290,947 (GRCm39) |
R178C |
possibly damaging |
Het |
Mtch1 |
T |
C |
17: 29,566,565 (GRCm39) |
D66G |
probably benign |
Het |
Mtmr7 |
A |
G |
8: 41,062,040 (GRCm39) |
V15A |
probably benign |
Het |
Mtss2 |
A |
T |
8: 111,452,875 (GRCm39) |
H40L |
possibly damaging |
Het |
Mxra8 |
A |
G |
4: 155,925,331 (GRCm39) |
|
probably benign |
Het |
Myo3b |
T |
C |
2: 70,075,253 (GRCm39) |
L535P |
probably damaging |
Het |
Neurl2 |
T |
A |
2: 164,674,739 (GRCm39) |
|
probably null |
Het |
Nfia |
A |
C |
4: 97,970,048 (GRCm39) |
T503P |
probably damaging |
Het |
Noa1 |
T |
C |
5: 77,454,179 (GRCm39) |
E487G |
possibly damaging |
Het |
Nuak1 |
A |
T |
10: 84,211,143 (GRCm39) |
V315D |
probably damaging |
Het |
Nup205 |
A |
G |
6: 35,207,505 (GRCm39) |
N1519S |
possibly damaging |
Het |
Or10x1 |
T |
A |
1: 174,196,966 (GRCm39) |
I161K |
probably damaging |
Het |
Or1l4b |
T |
C |
2: 37,036,266 (GRCm39) |
L14P |
probably damaging |
Het |
Or1o1 |
T |
C |
17: 37,716,589 (GRCm39) |
V50A |
probably benign |
Het |
Or51f1e |
A |
G |
7: 102,747,526 (GRCm39) |
I193V |
possibly damaging |
Het |
Or6b13 |
G |
T |
7: 139,782,340 (GRCm39) |
C114* |
probably null |
Het |
Or9s18 |
G |
A |
13: 65,300,493 (GRCm39) |
V152M |
possibly damaging |
Het |
Peli1 |
T |
A |
11: 21,098,528 (GRCm39) |
|
probably benign |
Het |
Ppp6r1 |
A |
G |
7: 4,646,206 (GRCm39) |
L175P |
probably damaging |
Het |
Prkcd |
A |
G |
14: 30,321,700 (GRCm39) |
L498P |
probably damaging |
Het |
Prss30 |
T |
A |
17: 24,191,769 (GRCm39) |
I251F |
probably benign |
Het |
Psme3 |
A |
T |
11: 101,207,907 (GRCm39) |
N21Y |
probably benign |
Het |
Ptpra |
T |
C |
2: 130,374,081 (GRCm39) |
Y271H |
probably damaging |
Het |
Ralgapa1 |
T |
A |
12: 55,745,588 (GRCm39) |
N1303Y |
probably damaging |
Het |
Rims4 |
T |
C |
2: 163,707,463 (GRCm39) |
I121V |
probably benign |
Het |
Rnf123 |
A |
T |
9: 107,933,290 (GRCm39) |
L1149Q |
probably damaging |
Het |
Ryr3 |
T |
A |
2: 112,738,807 (GRCm39) |
L593F |
probably damaging |
Het |
Sec23b |
T |
C |
2: 144,427,519 (GRCm39) |
F582S |
probably damaging |
Het |
Sgpl1 |
T |
C |
10: 60,940,297 (GRCm39) |
K335R |
probably benign |
Het |
Sirpa |
C |
T |
2: 129,451,163 (GRCm39) |
T141I |
probably damaging |
Het |
Snap91 |
T |
C |
9: 86,674,613 (GRCm39) |
T533A |
possibly damaging |
Het |
Sphkap |
T |
G |
1: 83,255,105 (GRCm39) |
E881D |
probably benign |
Het |
Sptan1 |
C |
A |
2: 29,901,054 (GRCm39) |
R1407S |
probably damaging |
Het |
Tfdp1 |
A |
G |
8: 13,423,895 (GRCm39) |
T353A |
probably benign |
Het |
Ttyh1 |
A |
G |
7: 4,125,533 (GRCm39) |
I62V |
possibly damaging |
Het |
Vwde |
A |
T |
6: 13,196,047 (GRCm39) |
V326D |
possibly damaging |
Het |
Zfp398 |
T |
C |
6: 47,836,446 (GRCm39) |
I82T |
possibly damaging |
Het |
Zp1 |
A |
G |
19: 10,896,198 (GRCm39) |
Y176H |
possibly damaging |
Het |
|
Other mutations in Slit1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00162:Slit1
|
APN |
19 |
41,639,274 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL00515:Slit1
|
APN |
19 |
41,612,940 (GRCm39) |
missense |
probably damaging |
0.97 |
IGL00909:Slit1
|
APN |
19 |
41,590,694 (GRCm39) |
missense |
possibly damaging |
0.89 |
IGL00953:Slit1
|
APN |
19 |
41,590,739 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01116:Slit1
|
APN |
19 |
41,594,824 (GRCm39) |
missense |
possibly damaging |
0.93 |
IGL01457:Slit1
|
APN |
19 |
41,599,483 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01688:Slit1
|
APN |
19 |
41,717,545 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01720:Slit1
|
APN |
19 |
41,622,653 (GRCm39) |
missense |
probably benign |
0.01 |
IGL01925:Slit1
|
APN |
19 |
41,596,817 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL02008:Slit1
|
APN |
19 |
41,634,579 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02312:Slit1
|
APN |
19 |
41,590,119 (GRCm39) |
missense |
possibly damaging |
0.66 |
IGL02398:Slit1
|
APN |
19 |
41,590,676 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02542:Slit1
|
APN |
19 |
41,615,687 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02559:Slit1
|
APN |
19 |
41,709,524 (GRCm39) |
missense |
probably benign |
0.01 |
IGL02609:Slit1
|
APN |
19 |
41,590,743 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02623:Slit1
|
APN |
19 |
41,640,122 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL02729:Slit1
|
APN |
19 |
41,591,773 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03230:Slit1
|
APN |
19 |
41,717,524 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03387:Slit1
|
APN |
19 |
41,591,881 (GRCm39) |
missense |
possibly damaging |
0.57 |
PIT4576001:Slit1
|
UTSW |
19 |
41,612,988 (GRCm39) |
missense |
possibly damaging |
0.52 |
R0366:Slit1
|
UTSW |
19 |
41,599,470 (GRCm39) |
missense |
probably damaging |
1.00 |
R0432:Slit1
|
UTSW |
19 |
41,731,732 (GRCm39) |
missense |
probably damaging |
0.98 |
R0496:Slit1
|
UTSW |
19 |
41,596,750 (GRCm39) |
splice site |
probably benign |
|
R0722:Slit1
|
UTSW |
19 |
41,596,874 (GRCm39) |
missense |
probably damaging |
1.00 |
R1468:Slit1
|
UTSW |
19 |
41,596,823 (GRCm39) |
missense |
probably damaging |
1.00 |
R1468:Slit1
|
UTSW |
19 |
41,596,823 (GRCm39) |
missense |
probably damaging |
1.00 |
R1488:Slit1
|
UTSW |
19 |
41,596,824 (GRCm39) |
missense |
probably damaging |
1.00 |
R1615:Slit1
|
UTSW |
19 |
41,639,110 (GRCm39) |
splice site |
probably benign |
|
R1694:Slit1
|
UTSW |
19 |
41,626,031 (GRCm39) |
missense |
possibly damaging |
0.69 |
R1762:Slit1
|
UTSW |
19 |
41,591,774 (GRCm39) |
missense |
probably damaging |
1.00 |
R1842:Slit1
|
UTSW |
19 |
41,709,477 (GRCm39) |
critical splice donor site |
probably null |
|
R1844:Slit1
|
UTSW |
19 |
41,614,012 (GRCm39) |
missense |
probably damaging |
1.00 |
R1940:Slit1
|
UTSW |
19 |
41,619,215 (GRCm39) |
missense |
probably damaging |
1.00 |
R2087:Slit1
|
UTSW |
19 |
41,625,922 (GRCm39) |
missense |
probably benign |
0.00 |
R2094:Slit1
|
UTSW |
19 |
41,594,819 (GRCm39) |
missense |
probably damaging |
0.99 |
R2095:Slit1
|
UTSW |
19 |
41,594,819 (GRCm39) |
missense |
probably damaging |
0.99 |
R2104:Slit1
|
UTSW |
19 |
41,590,686 (GRCm39) |
missense |
possibly damaging |
0.69 |
R2305:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R2972:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R2973:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R2974:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R3159:Slit1
|
UTSW |
19 |
41,592,812 (GRCm39) |
missense |
probably benign |
|
R3752:Slit1
|
UTSW |
19 |
41,635,406 (GRCm39) |
critical splice donor site |
probably null |
|
R4095:Slit1
|
UTSW |
19 |
41,596,925 (GRCm39) |
intron |
probably benign |
|
R4282:Slit1
|
UTSW |
19 |
41,602,856 (GRCm39) |
missense |
probably benign |
|
R4417:Slit1
|
UTSW |
19 |
41,602,908 (GRCm39) |
missense |
probably damaging |
1.00 |
R4607:Slit1
|
UTSW |
19 |
41,605,232 (GRCm39) |
missense |
probably benign |
0.10 |
R4729:Slit1
|
UTSW |
19 |
41,635,459 (GRCm39) |
missense |
probably damaging |
1.00 |
R4756:Slit1
|
UTSW |
19 |
41,637,452 (GRCm39) |
missense |
probably damaging |
1.00 |
R4764:Slit1
|
UTSW |
19 |
41,709,483 (GRCm39) |
nonsense |
probably null |
|
R4874:Slit1
|
UTSW |
19 |
41,717,493 (GRCm39) |
critical splice donor site |
probably null |
|
R5581:Slit1
|
UTSW |
19 |
41,605,102 (GRCm39) |
critical splice donor site |
probably null |
|
R5699:Slit1
|
UTSW |
19 |
41,613,959 (GRCm39) |
critical splice donor site |
probably null |
|
R5888:Slit1
|
UTSW |
19 |
41,731,735 (GRCm39) |
missense |
probably damaging |
1.00 |
R5906:Slit1
|
UTSW |
19 |
41,594,813 (GRCm39) |
missense |
probably damaging |
1.00 |
R6176:Slit1
|
UTSW |
19 |
41,626,034 (GRCm39) |
missense |
probably damaging |
1.00 |
R6277:Slit1
|
UTSW |
19 |
41,588,948 (GRCm39) |
missense |
possibly damaging |
0.81 |
R6702:Slit1
|
UTSW |
19 |
41,603,309 (GRCm39) |
missense |
possibly damaging |
0.95 |
R6860:Slit1
|
UTSW |
19 |
41,605,154 (GRCm39) |
missense |
probably benign |
0.10 |
R7015:Slit1
|
UTSW |
19 |
41,618,325 (GRCm39) |
nonsense |
probably null |
|
R7172:Slit1
|
UTSW |
19 |
41,623,105 (GRCm39) |
missense |
probably damaging |
1.00 |
R7512:Slit1
|
UTSW |
19 |
41,589,074 (GRCm39) |
missense |
probably damaging |
1.00 |
R7568:Slit1
|
UTSW |
19 |
41,590,074 (GRCm39) |
missense |
probably damaging |
1.00 |
R7614:Slit1
|
UTSW |
19 |
41,622,639 (GRCm39) |
missense |
probably damaging |
1.00 |
R7650:Slit1
|
UTSW |
19 |
41,618,363 (GRCm39) |
missense |
probably damaging |
1.00 |
R7687:Slit1
|
UTSW |
19 |
41,639,128 (GRCm39) |
missense |
probably benign |
0.03 |
R7732:Slit1
|
UTSW |
19 |
41,592,847 (GRCm39) |
missense |
probably benign |
0.01 |
R7947:Slit1
|
UTSW |
19 |
41,599,248 (GRCm39) |
missense |
probably benign |
|
R7947:Slit1
|
UTSW |
19 |
41,599,247 (GRCm39) |
missense |
probably damaging |
1.00 |
R8171:Slit1
|
UTSW |
19 |
41,715,512 (GRCm39) |
missense |
probably damaging |
0.97 |
R8217:Slit1
|
UTSW |
19 |
41,612,959 (GRCm39) |
missense |
possibly damaging |
0.60 |
R8355:Slit1
|
UTSW |
19 |
41,634,473 (GRCm39) |
missense |
probably damaging |
1.00 |
R9025:Slit1
|
UTSW |
19 |
41,612,968 (GRCm39) |
missense |
probably benign |
0.01 |
R9124:Slit1
|
UTSW |
19 |
41,594,951 (GRCm39) |
missense |
probably benign |
0.02 |
R9288:Slit1
|
UTSW |
19 |
41,613,144 (GRCm39) |
intron |
probably benign |
|
R9343:Slit1
|
UTSW |
19 |
41,615,737 (GRCm39) |
missense |
probably damaging |
1.00 |
R9435:Slit1
|
UTSW |
19 |
41,591,764 (GRCm39) |
critical splice donor site |
probably null |
|
R9563:Slit1
|
UTSW |
19 |
41,596,874 (GRCm39) |
missense |
probably damaging |
1.00 |
R9564:Slit1
|
UTSW |
19 |
41,591,861 (GRCm39) |
missense |
probably benign |
0.16 |
R9595:Slit1
|
UTSW |
19 |
41,637,851 (GRCm39) |
missense |
probably damaging |
1.00 |
R9667:Slit1
|
UTSW |
19 |
41,731,832 (GRCm39) |
nonsense |
probably null |
|
X0023:Slit1
|
UTSW |
19 |
41,590,079 (GRCm39) |
missense |
probably benign |
|
|
Predicted Primers |
PCR Primer
(F):5'- CTCGAGAAACCTGGGAAAGC -3'
(R):5'- CCTTGTAGTTGCATGGACCC -3'
Sequencing Primer
(F):5'- AAAGCTGGGGTGCTACTTCC -3'
(R):5'- ATGGACCCCAGACATTCAGTGTG -3'
|
Posted On |
2016-03-01 |