Mutagenetix > Incidental Mutation

Incidental Mutation 'R4856:Pramel27'

373946

Institutional Source

Beutler Lab

Gene Symbol

Pramel27

Ensembl Gene

ENSMUSG00000029451

Gene Name

PRAME like 27

Synonyms

Gm13103

MMRRC Submission

042467-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.068) question?

Stock #

R4856 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

143573067-143580207 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 143579873 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Leucine at position 486 (R486L)

Ref Sequence

ENSEMBL: ENSMUSP00000092099 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000094522] [ENSMUST00000105768] [ENSMUST00000139747]

AlphaFold

Q4VAD2

Predicted Effect

probably benign
Transcript: ENSMUST00000094522
AA Change: R486L

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000092099
Gene: ENSMUSG00000029451
AA Change: R486L

Domain	Start	End	E-Value	Type
low complexity region	403	413	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000105768

Predicted Effect

probably benign
Transcript: ENSMUST00000139747

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.4%
20x: 92.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aebp2	G	A	6: 140,589,799 (GRCm39)		probably null	Het
Arsi	G	A	18: 61,049,723 (GRCm39)	G202E	probably benign	Het
Atp2b4	T	A	1: 133,634,518 (GRCm39)	I1177L	probably benign	Het
Bub3	A	T	7: 131,163,297 (GRCm39)	D76V	probably damaging	Het
Cacna2d4	G	A	6: 119,255,217 (GRCm39)	R578Q	possibly damaging	Het
Caprin2	A	C	6: 148,774,509 (GRCm39)	S268A	probably benign	Het
Card6	T	C	15: 5,134,623 (GRCm39)		probably null	Het
Cdk13	A	G	13: 17,894,319 (GRCm39)	S1103P	probably benign	Het
Cfap221	T	C	1: 119,861,934 (GRCm39)	T614A	probably damaging	Het
Cfap221	T	A	1: 119,912,488 (GRCm39)	Y133F	probably damaging	Het
Clcc1	A	G	3: 108,584,154 (GRCm39)	T513A	probably benign	Het
Clec4g	T	A	8: 3,766,419 (GRCm39)		probably benign	Het
Cntln	A	C	4: 84,889,466 (GRCm39)	E316D	probably benign	Het
Cpne2	T	A	8: 95,290,592 (GRCm39)	D392E	probably benign	Het
Cry1	G	T	10: 84,984,634 (GRCm39)	P147T	probably damaging	Het
Cyp4a29	T	C	4: 115,110,078 (GRCm39)	V440A	probably benign	Het
Ddx46	A	G	13: 55,786,012 (GRCm39)	D64G	unknown	Het
Dhx34	A	G	7: 15,949,367 (GRCm39)	S354P	possibly damaging	Het
Ecm2	A	T	13: 49,676,263 (GRCm39)	I327F	possibly damaging	Het
Elavl3	T	C	9: 21,937,614 (GRCm39)	K189E	possibly damaging	Het
Enam	A	T	5: 88,636,593 (GRCm39)	R82*	probably null	Het
Erf	A	G	7: 24,945,636 (GRCm39)	V45A	probably damaging	Het
Fat3	T	A	9: 15,932,626 (GRCm39)	I1436F	probably benign	Het
Flnc	T	C	6: 29,447,889 (GRCm39)	Y1231H	probably damaging	Het
Ggta1	T	A	2: 35,292,803 (GRCm39)	H180L	possibly damaging	Het
Grin2c	T	C	11: 115,151,616 (GRCm39)	T115A	probably damaging	Het
H6pd	C	T	4: 150,067,235 (GRCm39)	V384M	possibly damaging	Het
Hba-x	A	G	11: 32,227,008 (GRCm39)	E39G	probably benign	Het
Hnrnpul2	C	T	19: 8,807,191 (GRCm39)	P618S	probably benign	Het
Hpse2	C	T	19: 42,777,396 (GRCm39)	R590H	probably damaging	Het
Ighv1-54	C	A	12: 115,157,423 (GRCm39)	G75C	probably damaging	Het
Ighv8-11	C	A	12: 115,530,774 (GRCm39)	R118L	possibly damaging	Het
Iqcm	A	T	8: 76,615,228 (GRCm39)	R436S	possibly damaging	Het
Islr	T	C	9: 58,064,889 (GRCm39)	D206G	probably damaging	Het
Itih1	A	G	14: 30,658,658 (GRCm39)		probably null	Het
Jam2	G	A	16: 84,598,490 (GRCm39)	D34N	probably benign	Het
Klhl14	A	T	18: 21,691,029 (GRCm39)		probably null	Het
Lama2	TTTGCGCATT	TTT	10: 26,919,639 (GRCm39)		probably null	Het
Lrrc66	A	G	5: 73,765,910 (GRCm39)	F378L	probably benign	Het
Map10	T	A	8: 126,397,431 (GRCm39)	Y275N	probably damaging	Het
Mpi	T	C	9: 57,452,590 (GRCm39)	Y314C	probably damaging	Het
Mpp3	A	G	11: 101,915,962 (GRCm39)	Y55H	probably benign	Het
Nectin4	T	C	1: 171,212,383 (GRCm39)	V327A	possibly damaging	Het
Nlrp12	T	A	7: 3,289,072 (GRCm39)	D480V	probably damaging	Het
Nolc1	GAGCAGCAGCAGCAGCAGCAGCAGCAGC	GAGCAGCAGCAGCAGCAGCAGCAGC	19: 46,071,594 (GRCm39)		probably benign	Het
Notch2	A	T	3: 98,009,735 (GRCm39)	Y554F	probably damaging	Het
Nrsn2	T	C	2: 152,211,531 (GRCm39)	K167E	probably benign	Het
Olr1	T	A	6: 129,470,559 (GRCm39)	K203*	probably null	Het
Or14j8	A	T	17: 38,262,962 (GRCm39)	S318T	probably benign	Het
Or2ag13	T	A	7: 106,473,177 (GRCm39)	I92F	probably damaging	Het
Or5b117	T	C	19: 13,431,885 (GRCm39)		probably null	Het
Or8b3	A	T	9: 38,314,764 (GRCm39)	N195I	probably damaging	Het
Or9i2	T	A	19: 13,815,643 (GRCm39)	E298V	probably damaging	Het
Osbpl9	T	C	4: 108,925,564 (GRCm39)	N485S	probably benign	Het
Pbk	T	A	14: 66,052,650 (GRCm39)	H164Q	probably damaging	Het
Pfn2	G	T	3: 57,754,874 (GRCm39)	N10K	probably damaging	Het
Pik3ca	A	G	3: 32,491,312 (GRCm39)	D133G	probably damaging	Het
Prl6a1	A	T	13: 27,502,983 (GRCm39)	D193V	probably damaging	Het
Rad21	G	T	15: 51,831,896 (GRCm39)	P395Q	probably damaging	Het
Reps1	T	A	10: 17,999,373 (GRCm39)	I720N	probably damaging	Het
Rpn2	T	C	2: 157,159,964 (GRCm39)		probably null	Het
Rreb1	G	A	13: 38,115,034 (GRCm39)	V798M	possibly damaging	Het
Sardh	C	T	2: 27,134,489 (GRCm39)	R9H	probably benign	Het
Scgb3a2	C	T	18: 43,899,819 (GRCm39)	P36S	probably damaging	Het
Scn10a	C	A	9: 119,523,375 (GRCm39)	G6V	possibly damaging	Het
Scn10a	C	T	9: 119,523,376 (GRCm39)	G6R	possibly damaging	Het
Scn3a	T	C	2: 65,291,376 (GRCm39)	D1790G	probably damaging	Het
Sec24b	A	T	3: 129,777,619 (GRCm39)	H1226Q	probably benign	Het
Shroom3	G	T	5: 93,090,945 (GRCm39)	V1151F	probably damaging	Het
Slc12a3	G	A	8: 95,078,438 (GRCm39)		probably null	Het
Slitrk6	T	C	14: 110,989,315 (GRCm39)	T131A	probably damaging	Het
Spata1	C	G	3: 146,175,529 (GRCm39)	D326H	probably damaging	Het
Tex52	A	T	6: 128,361,951 (GRCm39)		probably null	Het
Tma16	A	C	8: 66,934,129 (GRCm39)	C75W	probably damaging	Het
Tmem67	G	A	4: 12,089,416 (GRCm39)		probably benign	Het
Trgv4	T	C	13: 19,369,236 (GRCm39)	V29A	probably benign	Het
Trmt10a	A	T	3: 137,854,146 (GRCm39)	K75*	probably null	Het
Ttc3	T	C	16: 94,191,142 (GRCm39)	V228A	probably benign	Het
Ttn	T	C	2: 76,561,644 (GRCm39)	D28954G	probably damaging	Het
Uggt2	A	G	14: 119,273,376 (GRCm39)		probably null	Het
Vars1	T	A	17: 35,234,702 (GRCm39)	V1177E	probably benign	Het
Vmn1r59	T	C	7: 5,457,532 (GRCm39)	D76G	possibly damaging	Het
Vmn2r114	G	T	17: 23,527,008 (GRCm39)	A508E	probably benign	Het
Vps41	G	A	13: 19,013,425 (GRCm39)	V348M	probably damaging	Het
Zbtb43	T	C	2: 33,343,944 (GRCm39)	H427R	probably damaging	Het

Other mutations in Pramel27

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01363:Pramel27	APN	4	143,579,846 (GRCm39)	missense	probably benign	0.01
IGL01383:Pramel27	APN	4	143,573,102 (GRCm39)	utr 5 prime	probably benign
IGL01735:Pramel27	APN	4	143,578,401 (GRCm39)	missense	probably damaging	1.00
IGL01976:Pramel27	APN	4	143,579,363 (GRCm39)	missense	probably benign	0.17
IGL03096:Pramel27	APN	4	143,577,485 (GRCm39)	missense	probably benign	0.01
IGL03280:Pramel27	APN	4	143,578,489 (GRCm39)	missense	possibly damaging	0.74
IGL03295:Pramel27	APN	4	143,579,759 (GRCm39)	missense	probably damaging	1.00
FR4342:Pramel27	UTSW	4	143,578,213 (GRCm39)	frame shift	probably null
PIT4687001:Pramel27	UTSW	4	143,573,103 (GRCm39)	start gained	probably benign
R0218:Pramel27	UTSW	4	143,578,401 (GRCm39)	missense	probably damaging	1.00
R0612:Pramel27	UTSW	4	143,578,658 (GRCm39)	unclassified	probably benign
R1755:Pramel27	UTSW	4	143,577,380 (GRCm39)	missense	probably damaging	1.00
R2509:Pramel27	UTSW	4	143,578,561 (GRCm39)	missense	probably benign	0.01
R2510:Pramel27	UTSW	4	143,578,561 (GRCm39)	missense	probably benign	0.01
R2511:Pramel27	UTSW	4	143,578,561 (GRCm39)	missense	probably benign	0.01
R4603:Pramel27	UTSW	4	143,579,451 (GRCm39)	missense	probably benign	0.01
R4694:Pramel27	UTSW	4	143,579,530 (GRCm39)	missense	probably damaging	0.97
R4886:Pramel27	UTSW	4	143,579,873 (GRCm39)	missense	probably benign	0.00
R4927:Pramel27	UTSW	4	143,578,187 (GRCm39)	missense	probably damaging	1.00
R5168:Pramel27	UTSW	4	143,579,768 (GRCm39)	missense	probably benign	0.02
R5270:Pramel27	UTSW	4	143,578,468 (GRCm39)	missense	probably damaging	0.97
R5402:Pramel27	UTSW	4	143,578,225 (GRCm39)	critical splice donor site	probably null
R5618:Pramel27	UTSW	4	143,577,263 (GRCm39)	missense	possibly damaging	0.92
R6078:Pramel27	UTSW	4	143,578,155 (GRCm39)	missense	possibly damaging	0.58
R6138:Pramel27	UTSW	4	143,578,155 (GRCm39)	missense	possibly damaging	0.58
R6362:Pramel27	UTSW	4	143,579,435 (GRCm39)	missense	probably damaging	0.99
R6526:Pramel27	UTSW	4	143,579,384 (GRCm39)	missense	probably damaging	1.00
R6555:Pramel27	UTSW	4	143,578,140 (GRCm39)	missense	possibly damaging	0.58
R6595:Pramel27	UTSW	4	143,579,326 (GRCm39)	missense	probably damaging	1.00
R6675:Pramel27	UTSW	4	143,579,828 (GRCm39)	missense	probably damaging	0.98
R7216:Pramel27	UTSW	4	143,578,399 (GRCm39)	missense	probably damaging	0.96
R7282:Pramel27	UTSW	4	143,578,451 (GRCm39)	missense	possibly damaging	0.85
R7424:Pramel27	UTSW	4	143,579,779 (GRCm39)	missense	probably benign	0.01
R7511:Pramel27	UTSW	4	143,573,116 (GRCm39)	missense	possibly damaging	0.68
R7591:Pramel27	UTSW	4	143,577,481 (GRCm39)	missense	probably benign	0.01
R7868:Pramel27	UTSW	4	143,578,154 (GRCm39)	missense	possibly damaging	0.58
R8192:Pramel27	UTSW	4	143,578,109 (GRCm39)	nonsense	probably null
R8244:Pramel27	UTSW	4	143,579,854 (GRCm39)	missense	probably damaging	1.00
R8256:Pramel27	UTSW	4	143,578,255 (GRCm39)	missense	probably benign	0.05
R8531:Pramel27	UTSW	4	143,579,601 (GRCm39)	missense	probably benign	0.00
R8540:Pramel27	UTSW	4	143,579,496 (GRCm39)	missense	probably benign	0.00
R8793:Pramel27	UTSW	4	143,577,627 (GRCm39)	intron	probably benign
R8880:Pramel27	UTSW	4	143,573,140 (GRCm39)	critical splice donor site	probably null
R9069:Pramel27	UTSW	4	143,578,345 (GRCm39)	missense	probably benign	0.00
R9603:Pramel27	UTSW	4	143,578,267 (GRCm39)	missense
R9748:Pramel27	UTSW	4	143,579,892 (GRCm39)	makesense	probably null
R9797:Pramel27	UTSW	4	143,579,818 (GRCm39)	missense	possibly damaging	0.79
U15987:Pramel27	UTSW	4	143,578,155 (GRCm39)	missense	possibly damaging	0.58
Z1176:Pramel27	UTSW	4	143,579,680 (GRCm39)	missense	probably benign	0.22

Predicted Primers

PCR Primer
(F):5'- CGGCCCTCTTGAGTGCTATG -3'
(R):5'- AAGGAACTGCTCAAATCTGAGA -3'

Sequencing Primer
(F):5'- CCCTCTTGAGTGCTATGATGACAG -3'
(R):5'- GAAGGTCTTGAGTTCAAATCCCTGC -3'

Posted On

2016-03-01