Mutagenetix > Incidental Mutation

Incidental Mutation 'R4879:Tnfaip3'

375144

Institutional Source

Beutler Lab

Gene Symbol

Tnfaip3

Ensembl Gene

ENSMUSG00000019850

Gene Name

tumor necrosis factor, alpha-induced protein 3

Synonyms

A20, Tnfip3, zinc finger protein A20

MMRRC Submission

042488-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4879 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

18876658-18891158 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 18881321 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 322 (T322A)

Ref Sequence

ENSEMBL: ENSMUSP00000101167 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000019997] [ENSMUST00000105527] [ENSMUST00000122863]

AlphaFold

Q60769

Predicted Effect

probably benign
Transcript: ENSMUST00000019997
AA Change: T322A

PolyPhen 2 Score 0.029 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000019997
Gene: ENSMUSG00000019850
AA Change: T322A

Domain	Start	End	E-Value	Type
Pfam:OTU	98	257	1.2e-30	PFAM
ZnF_A20	384	409	8.06e-9	SMART
low complexity region	425	436	N/A	INTRINSIC
ZnF_A20	467	492	3.76e-9	SMART
ZnF_A20	503	526	4.74e-6	SMART
low complexity region	528	543	N/A	INTRINSIC
ZnF_A20	589	614	6.01e-8	SMART
ZnF_A20	639	664	1.56e-6	SMART
ZnF_A20	698	723	1.68e-6	SMART
ZnF_A20	744	769	2.81e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000105527
AA Change: T322A

PolyPhen 2 Score 0.029 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000101167
Gene: ENSMUSG00000019850
AA Change: T322A

Domain	Start	End	E-Value	Type
Pfam:OTU	98	257	7.8e-34	PFAM
ZnF_A20	384	409	8.06e-9	SMART
low complexity region	425	436	N/A	INTRINSIC
ZnF_A20	467	492	3.76e-9	SMART
ZnF_A20	503	526	4.74e-6	SMART
low complexity region	528	543	N/A	INTRINSIC
ZnF_A20	589	614	6.01e-8	SMART
ZnF_A20	639	664	1.56e-6	SMART
ZnF_A20	698	723	1.68e-6	SMART
ZnF_A20	744	769	2.81e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000122863

SMART Domains

Protein: ENSMUSP00000116318
Gene: ENSMUSG00000019850

Domain	Start	End	E-Value	Type
PDB:2VFJ\|D	1	122	2e-83	PDB
SCOP:d1e3ha3	18	109	2e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154590

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154749

Meta Mutation Damage Score

0.1270

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.4%

Validation Efficiency

97% (86/89)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene was identified as a gene whose expression is rapidly induced by the tumor necrosis factor (TNF). The protein encoded by this gene is a zinc finger protein and ubiqitin-editing enzyme, and has been shown to inhibit NF-kappa B activation as well as TNF-mediated apoptosis. The encoded protein, which has both ubiquitin ligase and deubiquitinase activities, is involved in the cytokine-mediated immune and inflammatory responses. Several transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2012]
PHENOTYPE: Homozygous null mice display runting, severe multi-organ inflammation, hypersensitivity to lipopolysaccharide and TNF, and premature death. Older mice homozygous for point mutations that disrupt deubiquitinating activity develop splenomegaly and show an increased number of myeloid cells. [provided by MGI curators]

Allele List at MGI

All alleles(4) : Targeted, knock-out(2) Targeted, other(2)

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca6	T	A	11: 110,110,526 (GRCm39)	Y541F	probably damaging	Het
Acot12	T	A	13: 91,911,083 (GRCm39)	V136E	probably benign	Het
Aftph	A	G	11: 20,648,311 (GRCm39)		probably null	Het
Ambra1	C	T	2: 91,603,039 (GRCm39)		probably benign	Het
Anks6	C	T	4: 47,030,795 (GRCm39)	G601S	probably damaging	Het
Ano9	T	C	7: 140,690,415 (GRCm39)	D73G	probably benign	Het
Asap3	G	A	4: 135,969,975 (GRCm39)	D778N	probably benign	Het
Atp8a2	G	T	14: 60,245,918 (GRCm39)	Y591*	probably null	Het
Blk	T	C	14: 63,613,414 (GRCm39)	T365A	probably benign	Het
C4b	G	T	17: 34,962,621 (GRCm39)	S27Y	probably damaging	Het
C6	G	T	15: 4,833,129 (GRCm39)		probably null	Het
Ccdc33	T	A	9: 57,974,839 (GRCm39)	I345F	possibly damaging	Het
Cetn3	T	A	13: 81,940,268 (GRCm39)		probably benign	Het
Cntn3	T	A	6: 102,244,389 (GRCm39)	I387L	possibly damaging	Het
Cog8	A	G	8: 107,782,984 (GRCm39)	C102R	probably damaging	Het
Cspg4b	T	C	13: 113,456,321 (GRCm39)	I789T	probably benign	Het
Cyp2c55	CA	C	19: 39,030,522 (GRCm39)		probably null	Het
Defa40	T	A	8: 21,740,380 (GRCm39)	L62Q	probably damaging	Het
Dmxl1	C	T	18: 50,022,534 (GRCm39)	A1624V	probably damaging	Het
Dnah1	T	G	14: 31,022,705 (GRCm39)	E1144A	possibly damaging	Het
Dnah12	T	A	14: 26,439,201 (GRCm39)		probably null	Het
Dnah2	G	A	11: 69,367,517 (GRCm39)	T1794I	probably damaging	Het
Entrep1	T	C	19: 23,953,019 (GRCm39)		probably null	Het
Erbin	A	T	13: 103,971,282 (GRCm39)	M778K	probably benign	Het
Fbxw10	G	T	11: 62,738,573 (GRCm39)	A156S	probably damaging	Het
Flnc	T	A	6: 29,460,805 (GRCm39)	F2632Y	probably damaging	Het
Frmd4a	A	G	2: 4,534,628 (GRCm39)	K160E	probably damaging	Het
Glipr1l2	A	G	10: 111,943,029 (GRCm39)	K295E	probably benign	Het
Herc1	T	A	9: 66,370,119 (GRCm39)	C465*	probably null	Het
Hoxb4	A	G	11: 96,211,014 (GRCm39)	I205V	probably damaging	Het
Ikbke	GCC	G	1: 131,203,004 (GRCm39)		probably null	Het
Il36a	A	G	2: 24,106,032 (GRCm39)	N29S	probably benign	Het
Ilk	A	G	7: 105,391,011 (GRCm39)	S292G	probably benign	Het
Itgb5	G	C	16: 33,696,348 (GRCm39)	G180R	probably damaging	Het
Josd1-ps	T	C	7: 27,648,768 (GRCm39)		noncoding transcript	Het
Kcnip4	T	C	5: 48,567,207 (GRCm39)	D120G	possibly damaging	Het
Kin	A	G	2: 10,085,455 (GRCm39)	D5G	probably benign	Het
Lrrtm2	C	A	18: 35,346,372 (GRCm39)	G310V	probably damaging	Het
Med1	T	C	11: 98,046,186 (GRCm39)		probably benign	Het
Mepce	C	A	5: 137,783,544 (GRCm39)		probably benign	Het
Nckipsd	T	A	9: 108,691,114 (GRCm39)		probably benign	Het
Notch3	T	A	17: 32,366,937 (GRCm39)	Q866L	probably benign	Het
Or52b4	A	T	7: 102,183,962 (GRCm39)	T3S	probably benign	Het
Or5l14	A	T	2: 87,793,040 (GRCm39)	H65Q	possibly damaging	Het
Or8k20	A	T	2: 86,106,107 (GRCm39)	C241*	probably null	Het
Orai1	T	C	5: 123,149,894 (GRCm39)		probably benign	Het
Pate12	G	A	9: 36,344,089 (GRCm39)	C24Y	probably damaging	Het
Pcdhb8	A	T	18: 37,489,219 (GRCm39)	E299V	probably damaging	Het
Pcnx4	G	A	12: 72,613,959 (GRCm39)	D635N	probably damaging	Het
Pex5	T	C	6: 124,375,322 (GRCm39)	I567V	probably benign	Het
Ppfibp2	T	C	7: 107,328,390 (GRCm39)	S485P	probably benign	Het
Sbno1	T	C	5: 124,542,087 (GRCm39)	Y356C	probably damaging	Het
Sdcbp	T	C	4: 6,381,056 (GRCm39)	I67T	possibly damaging	Het
Slc5a7	A	G	17: 54,583,679 (GRCm39)	I537T	probably benign	Het
Slc66a1	A	T	4: 139,029,095 (GRCm39)		probably null	Het
Smad4	A	G	18: 73,774,974 (GRCm39)	C442R	probably damaging	Het
Smpd5	A	G	15: 76,179,070 (GRCm39)	H146R	possibly damaging	Het
Snai2	A	G	16: 14,524,605 (GRCm39)	Y37C	probably benign	Het
Snapc4	C	T	2: 26,256,004 (GRCm39)	S840N	possibly damaging	Het
Stpg2	T	C	3: 138,921,134 (GRCm39)	I113T	probably benign	Het
Tbc1d32	T	C	10: 55,925,125 (GRCm39)		probably null	Het
Tfg	A	T	16: 56,521,520 (GRCm39)	S39R	probably damaging	Het
Thsd7b	T	A	1: 130,116,236 (GRCm39)	S1330T	possibly damaging	Het
Tpra1	A	G	6: 88,888,691 (GRCm39)	Y291C	probably damaging	Het
Trcg1	A	G	9: 57,154,003 (GRCm39)	D658G	probably damaging	Het
Trip4	C	T	9: 65,782,304 (GRCm39)	V143I	probably benign	Het
Trp53bp1	T	C	2: 121,033,084 (GRCm39)	K1691E	probably damaging	Het
Ttc8	T	A	12: 98,908,562 (GRCm39)	M77K	possibly damaging	Het
Tubb2a	A	T	13: 34,258,572 (GRCm39)	M406K	probably benign	Het
Txnrd1	T	A	10: 82,717,751 (GRCm39)		probably null	Het
Ugt2a3	C	A	5: 87,479,144 (GRCm39)	R268L	probably benign	Het
Usp34	T	G	11: 23,323,410 (GRCm39)	M982R	possibly damaging	Het
Vmn2r43	T	A	7: 8,258,102 (GRCm39)	K370N	probably benign	Het
Vopp1	A	T	6: 57,739,355 (GRCm39)		probably benign	Het
Vps11	A	C	9: 44,264,597 (GRCm39)	C660G	probably benign	Het
Wnk1	T	C	6: 119,926,338 (GRCm39)	H1137R	probably damaging	Het
Wtap	A	G	17: 13,188,322 (GRCm39)	Y193H	probably damaging	Het
Zfp462	T	A	4: 55,009,444 (GRCm39)	V470D	probably benign	Het

Other mutations in Tnfaip3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
lasvegas	APN	10	19,010,758 (GRCm38)	unclassified	probably benign
IGL00840:Tnfaip3	APN	10	18,880,874 (GRCm39)	missense	probably damaging	1.00
IGL00966:Tnfaip3	APN	10	18,880,885 (GRCm39)	missense	probably damaging	1.00
IGL01080:Tnfaip3	APN	10	18,887,403 (GRCm39)	missense	probably benign	0.03
IGL01736:Tnfaip3	APN	10	18,882,649 (GRCm39)	missense	probably damaging	1.00
IGL02318:Tnfaip3	APN	10	18,880,215 (GRCm39)	missense	probably benign	0.04
IGL02703:Tnfaip3	APN	10	18,882,780 (GRCm39)	missense	probably damaging	0.98
IGL03032:Tnfaip3	APN	10	18,880,357 (GRCm39)	missense	probably benign
IGL03331:Tnfaip3	APN	10	18,887,349 (GRCm39)	missense	possibly damaging	0.63
IGL03389:Tnfaip3	APN	10	18,880,735 (GRCm39)	missense	probably benign	0.03
PIT4243001:Tnfaip3	UTSW	10	18,887,322 (GRCm39)	missense	probably damaging	1.00
PIT4480001:Tnfaip3	UTSW	10	18,883,071 (GRCm39)	missense	probably benign
R0044:Tnfaip3	UTSW	10	18,887,374 (GRCm39)	missense	probably damaging	0.98
R0044:Tnfaip3	UTSW	10	18,887,374 (GRCm39)	missense	probably damaging	0.98
R0056:Tnfaip3	UTSW	10	18,881,041 (GRCm39)	missense	probably damaging	1.00
R0195:Tnfaip3	UTSW	10	18,881,461 (GRCm39)	missense	probably damaging	1.00
R0226:Tnfaip3	UTSW	10	18,878,495 (GRCm39)	missense	probably damaging	1.00
R0369:Tnfaip3	UTSW	10	18,882,660 (GRCm39)	nonsense	probably null
R0744:Tnfaip3	UTSW	10	18,878,697 (GRCm39)	missense	probably benign	0.09
R0833:Tnfaip3	UTSW	10	18,878,697 (GRCm39)	missense	probably benign	0.09
R1469:Tnfaip3	UTSW	10	18,884,017 (GRCm39)	missense	probably damaging	1.00
R1469:Tnfaip3	UTSW	10	18,884,017 (GRCm39)	missense	probably damaging	1.00
R1876:Tnfaip3	UTSW	10	18,880,682 (GRCm39)	missense	possibly damaging	0.81
R1902:Tnfaip3	UTSW	10	18,883,937 (GRCm39)	missense	probably benign	0.19
R1903:Tnfaip3	UTSW	10	18,883,937 (GRCm39)	missense	probably benign	0.19
R1922:Tnfaip3	UTSW	10	18,879,355 (GRCm39)	missense	possibly damaging	0.51
R1973:Tnfaip3	UTSW	10	18,880,252 (GRCm39)	missense	probably damaging	0.98
R2040:Tnfaip3	UTSW	10	18,883,900 (GRCm39)	missense	possibly damaging	0.89
R2513:Tnfaip3	UTSW	10	18,881,407 (GRCm39)	missense	probably benign	0.00
R2936:Tnfaip3	UTSW	10	18,887,357 (GRCm39)	missense	probably damaging	1.00
R3607:Tnfaip3	UTSW	10	18,881,350 (GRCm39)	missense	probably damaging	1.00
R4386:Tnfaip3	UTSW	10	18,882,758 (GRCm39)	missense	probably damaging	1.00
R4483:Tnfaip3	UTSW	10	18,887,375 (GRCm39)	missense	probably damaging	1.00
R4673:Tnfaip3	UTSW	10	18,887,580 (GRCm39)	intron	probably benign
R5082:Tnfaip3	UTSW	10	18,881,032 (GRCm39)	missense	probably damaging	1.00
R5524:Tnfaip3	UTSW	10	18,883,943 (GRCm39)	missense	probably damaging	0.98
R6559:Tnfaip3	UTSW	10	18,882,996 (GRCm39)	missense	probably damaging	1.00
R6776:Tnfaip3	UTSW	10	18,881,324 (GRCm39)	missense	probably benign	0.02
R6853:Tnfaip3	UTSW	10	18,879,499 (GRCm39)	missense	probably benign
R6891:Tnfaip3	UTSW	10	18,887,417 (GRCm39)	missense	probably damaging	1.00
R7144:Tnfaip3	UTSW	10	18,883,029 (GRCm39)	missense	probably benign	0.00
R7693:Tnfaip3	UTSW	10	18,880,528 (GRCm39)	missense	probably benign
R8155:Tnfaip3	UTSW	10	18,880,439 (GRCm39)	missense	possibly damaging	0.78
R8377:Tnfaip3	UTSW	10	18,887,258 (GRCm39)	missense	probably damaging	1.00
R8552:Tnfaip3	UTSW	10	18,880,414 (GRCm39)	missense	probably damaging	1.00
R8552:Tnfaip3	UTSW	10	18,880,213 (GRCm39)	missense	probably damaging	0.98
R8827:Tnfaip3	UTSW	10	18,880,795 (GRCm39)	missense	probably damaging	0.99
R9391:Tnfaip3	UTSW	10	18,883,075 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACTTCCACAATGCAGTCGTGG -3'
(R):5'- ATATCTGCACCATCATTTAGCAGG -3'

Sequencing Primer
(F):5'- GCAGTCGTGGCAATAACTTC -3'
(R):5'- GACAGATCCTGAGAATGAGA -3'

Posted On

2016-03-17