Incidental Mutation 'R4885:Fgd3'
ID 375661
Institutional Source Beutler Lab
Gene Symbol Fgd3
Ensembl Gene ENSMUSG00000037946
Gene Name FYVE, RhoGEF and PH domain containing 3
Synonyms ZFYVE5, 5830461L01Rik
MMRRC Submission 042851-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.078) question?
Stock # R4885 (G1)
Quality Score 225
Status Validated
Chromosome 13
Chromosomal Location 49415030-49473783 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 49417465 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Methionine at position 666 (T666M)
Ref Sequence ENSEMBL: ENSMUSP00000105714 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000048716] [ENSMUST00000110087]
AlphaFold no structure available at present
Predicted Effect possibly damaging
Transcript: ENSMUST00000048716
AA Change: T666M

PolyPhen 2 Score 0.659 (Sensitivity: 0.86; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000048692
Gene: ENSMUSG00000037946
AA Change: T666M

DomainStartEndE-ValueType
low complexity region 87 98 N/A INTRINSIC
RhoGEF 157 336 1.41e-58 SMART
PH 367 467 3.01e-17 SMART
FYVE 520 585 1.78e-7 SMART
PH 613 713 2.81e-8 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000110087
AA Change: T666M

PolyPhen 2 Score 0.659 (Sensitivity: 0.86; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000105714
Gene: ENSMUSG00000037946
AA Change: T666M

DomainStartEndE-ValueType
low complexity region 87 98 N/A INTRINSIC
RhoGEF 157 336 1.41e-58 SMART
PH 367 467 3.01e-17 SMART
FYVE 520 585 1.78e-7 SMART
PH 613 713 2.81e-8 SMART
Meta Mutation Damage Score 0.1795 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.7%
  • 20x: 93.6%
Validation Efficiency 99% (77/78)
Allele List at MGI
Other mutations in this stock
Total: 72 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcf3 A G 16: 20,370,425 (GRCm39) T317A probably benign Het
Adck1 G A 12: 88,407,865 (GRCm39) A199T probably benign Het
Adgrb1 A T 15: 74,444,011 (GRCm39) M1038L probably benign Het
Anapc10 C T 8: 80,455,779 (GRCm39) T76I probably benign Het
Atosa T C 9: 74,913,649 (GRCm39) L94P probably damaging Het
Bptf C T 11: 106,965,474 (GRCm39) S1177N probably benign Het
Bsn A T 9: 107,984,726 (GRCm39) Y337* probably null Het
Ccl20 T A 1: 83,095,580 (GRCm39) V48E possibly damaging Het
Ccnl1 C T 3: 65,864,320 (GRCm39) D122N probably damaging Het
Chat C G 14: 32,176,567 (GRCm39) G69A probably damaging Het
Cr2 T A 1: 194,841,039 (GRCm39) I418F possibly damaging Het
Dmxl1 G C 18: 50,011,862 (GRCm39) A1340P probably damaging Het
Eef2k G A 7: 120,491,155 (GRCm39) R547Q probably benign Het
Eml2 G A 7: 18,937,935 (GRCm39) S793N probably benign Het
Enox1 T A 14: 77,958,290 (GRCm39) L632Q probably damaging Het
Fabp9 T C 3: 10,259,738 (GRCm39) K92E probably damaging Het
Fam234a T C 17: 26,432,559 (GRCm39) H530R probably benign Het
Fancm C T 12: 65,149,417 (GRCm39) Q728* probably null Het
Foxs1 T C 2: 152,774,301 (GRCm39) M251V probably benign Het
Fsip2 A T 2: 82,818,438 (GRCm39) M4724L probably benign Het
Gemin6 G A 17: 80,535,327 (GRCm39) E96K probably damaging Het
Gfi1 C A 5: 107,871,152 (GRCm39) V80F probably damaging Het
H3c13 G T 3: 96,176,277 (GRCm39) V90F possibly damaging Het
Hectd1 A G 12: 51,847,505 (GRCm39) V442A probably damaging Het
Ift80 A G 3: 68,857,829 (GRCm39) I272T probably damaging Het
Impact C G 18: 13,119,430 (GRCm39) A214G probably damaging Het
Insl6 C T 19: 29,302,556 (GRCm39) E54K probably benign Het
Irak3 T A 10: 120,018,586 (GRCm39) D54V probably damaging Het
Itk C T 11: 46,227,171 (GRCm39) probably null Het
Ivl A T 3: 92,479,718 (GRCm39) C116S probably benign Het
Kcnq4 G A 4: 120,570,260 (GRCm39) A361V probably benign Het
L1td1 C T 4: 98,625,548 (GRCm39) P581L probably benign Het
Lrp1b T C 2: 41,358,905 (GRCm39) E656G probably benign Het
Macrod2 A G 2: 140,261,985 (GRCm39) T89A possibly damaging Het
Mettl13 T C 1: 162,364,837 (GRCm39) D514G probably damaging Het
Mfsd13b A T 7: 120,590,711 (GRCm39) I151F possibly damaging Het
Mical3 G A 6: 120,912,214 (GRCm39) P1882S probably damaging Het
Mycbp2 T C 14: 103,383,382 (GRCm39) E394G possibly damaging Het
Myo16 T A 8: 10,488,892 (GRCm39) S688T probably damaging Het
Neb T C 2: 52,176,058 (GRCm39) Y1467C probably damaging Het
Nhsl3 C T 4: 129,118,238 (GRCm39) R214Q probably damaging Het
Nkx6-3 C A 8: 23,643,914 (GRCm39) P105Q possibly damaging Het
Nlrp1b T C 11: 71,108,710 (GRCm39) T264A possibly damaging Het
Nnat G A 2: 157,403,678 (GRCm39) C122Y probably damaging Het
Notch3 G A 17: 32,360,351 (GRCm39) R1527C probably damaging Het
Or2y16 C T 11: 49,335,449 (GRCm39) T257I probably damaging Het
Or5an1c T G 19: 12,218,082 (GRCm39) probably null Het
Or5h18 A G 16: 58,847,518 (GRCm39) Y251H probably damaging Het
Pds5b C T 5: 150,639,927 (GRCm39) T14I probably benign Het
Phf19 A T 2: 34,789,718 (GRCm39) I334N probably damaging Het
Pik3ap1 T C 19: 41,364,365 (GRCm39) D118G probably benign Het
Pkhd1 T A 1: 20,140,712 (GRCm39) E3886V possibly damaging Het
Pkp1 A G 1: 135,846,690 (GRCm39) S21P possibly damaging Het
Pramel32 T A 4: 88,546,219 (GRCm39) L374F possibly damaging Het
Rack1 C A 11: 48,696,463 (GRCm39) A290E probably damaging Het
Rbm15 A G 3: 107,239,570 (GRCm39) V276A probably benign Het
Rnf216 A T 5: 143,076,335 (GRCm39) L183* probably null Het
Sc5d T C 9: 42,166,922 (GRCm39) I206V probably benign Het
Scpep1 A G 11: 88,826,737 (GRCm39) I233T probably benign Het
Sh3pxd2a A G 19: 47,257,132 (GRCm39) Y529H probably damaging Het
Slc1a4 A C 11: 20,254,384 (GRCm39) V494G probably damaging Het
Slc38a7 T C 8: 96,575,230 (GRCm39) T17A probably benign Het
Smg6 T C 11: 74,932,744 (GRCm39) S73P probably damaging Het
Stk32b T C 5: 37,624,141 (GRCm39) Y202C probably damaging Het
Tas2r140 A G 6: 40,468,334 (GRCm39) S55G probably damaging Het
Tcf12 C T 9: 71,766,122 (GRCm39) G504S probably null Het
Ttc3 G C 16: 94,227,690 (GRCm39) probably null Het
Ttc3 T C 16: 94,220,324 (GRCm39) I568T probably damaging Het
Ttc41 T G 10: 86,594,966 (GRCm39) N913K possibly damaging Het
Vrk1 G A 12: 106,024,231 (GRCm39) V236M probably damaging Het
Wscd1 C T 11: 71,650,972 (GRCm39) R100C probably damaging Het
Zc3h18 C T 8: 123,128,445 (GRCm39) probably benign Het
Other mutations in Fgd3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00539:Fgd3 APN 13 49,429,119 (GRCm39) splice site probably benign
IGL00816:Fgd3 APN 13 49,418,262 (GRCm39) splice site probably benign
IGL01797:Fgd3 APN 13 49,443,065 (GRCm39) missense probably damaging 1.00
IGL01993:Fgd3 APN 13 49,433,664 (GRCm39) missense possibly damaging 0.62
IGL02134:Fgd3 APN 13 49,450,225 (GRCm39) missense possibly damaging 0.84
IGL02327:Fgd3 APN 13 49,439,274 (GRCm39) missense probably damaging 1.00
IGL02367:Fgd3 APN 13 49,440,802 (GRCm39) missense probably damaging 1.00
IGL02532:Fgd3 APN 13 49,439,237 (GRCm39) missense probably damaging 1.00
IGL02830:Fgd3 APN 13 49,418,107 (GRCm39) splice site probably benign
IGL02888:Fgd3 APN 13 49,435,292 (GRCm39) critical splice donor site probably null
IGL03209:Fgd3 APN 13 49,439,294 (GRCm39) missense probably damaging 1.00
R0016:Fgd3 UTSW 13 49,450,085 (GRCm39) missense probably benign 0.10
R0016:Fgd3 UTSW 13 49,450,085 (GRCm39) missense probably benign 0.10
R0064:Fgd3 UTSW 13 49,449,901 (GRCm39) missense possibly damaging 0.73
R0064:Fgd3 UTSW 13 49,449,901 (GRCm39) missense possibly damaging 0.73
R0285:Fgd3 UTSW 13 49,417,424 (GRCm39) missense possibly damaging 0.89
R0526:Fgd3 UTSW 13 49,450,000 (GRCm39) missense probably benign 0.00
R0617:Fgd3 UTSW 13 49,418,173 (GRCm39) missense possibly damaging 0.80
R0648:Fgd3 UTSW 13 49,450,049 (GRCm39) missense probably benign 0.23
R1529:Fgd3 UTSW 13 49,420,170 (GRCm39) missense probably benign 0.19
R1577:Fgd3 UTSW 13 49,435,413 (GRCm39) missense probably damaging 0.99
R1913:Fgd3 UTSW 13 49,417,324 (GRCm39) missense possibly damaging 0.89
R2002:Fgd3 UTSW 13 49,449,931 (GRCm39) missense probably benign 0.05
R4342:Fgd3 UTSW 13 49,427,185 (GRCm39) critical splice donor site probably null
R4606:Fgd3 UTSW 13 49,450,036 (GRCm39) missense probably damaging 1.00
R4810:Fgd3 UTSW 13 49,443,126 (GRCm39) missense probably benign 0.01
R4962:Fgd3 UTSW 13 49,420,105 (GRCm39) missense probably benign 0.03
R4974:Fgd3 UTSW 13 49,432,078 (GRCm39) missense probably damaging 1.00
R5201:Fgd3 UTSW 13 49,449,854 (GRCm39) missense probably benign 0.00
R5524:Fgd3 UTSW 13 49,431,053 (GRCm39) missense probably damaging 0.97
R5588:Fgd3 UTSW 13 49,440,786 (GRCm39) missense probably damaging 1.00
R5710:Fgd3 UTSW 13 49,450,205 (GRCm39) missense probably benign 0.00
R5753:Fgd3 UTSW 13 49,428,416 (GRCm39) missense possibly damaging 0.94
R6048:Fgd3 UTSW 13 49,427,224 (GRCm39) missense probably benign 0.01
R6086:Fgd3 UTSW 13 49,440,772 (GRCm39) missense probably benign 0.12
R7293:Fgd3 UTSW 13 49,418,134 (GRCm39) missense probably benign 0.00
R7311:Fgd3 UTSW 13 49,450,166 (GRCm39) missense possibly damaging 0.94
R7383:Fgd3 UTSW 13 49,421,785 (GRCm39) missense possibly damaging 0.50
R8205:Fgd3 UTSW 13 49,449,823 (GRCm39) missense probably benign 0.11
R8463:Fgd3 UTSW 13 49,420,081 (GRCm39) missense possibly damaging 0.89
R8513:Fgd3 UTSW 13 49,417,400 (GRCm39) missense probably benign 0.00
Z1176:Fgd3 UTSW 13 49,435,302 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- ACAGTAGGAGGCTCTGCTCATG -3'
(R):5'- GAAATGAAGGGAGCCTCCTC -3'

Sequencing Primer
(F):5'- CTCTGCTCATGGAGTGTCCG -3'
(R):5'- TCCTCCCAGCACCTACCTGAG -3'
Posted On 2016-03-17