Mutagenetix > Incidental Mutation

Incidental Mutation 'R4897:Vcpip1'

375782

Institutional Source

Beutler Lab

Gene Symbol

Vcpip1

Ensembl Gene

ENSMUSG00000045210

Gene Name

valosin containing protein (p97)/p47 complex interacting protein 1

Synonyms

5730538E15Rik, Vcip135, 5730421J18Rik

MMRRC Submission

042501-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.492) question?

Stock #

R4897 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

9788847-9818607 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 9817572 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 270 (N270K)

Ref Sequence

ENSEMBL: ENSMUSP00000051248 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000057438]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000057438
AA Change: N270K

PolyPhen 2 Score 0.969 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000051248
Gene: ENSMUSG00000045210
AA Change: N270K

Domain	Start	End	E-Value	Type
low complexity region	4	17	N/A	INTRINSIC
low complexity region	19	36	N/A	INTRINSIC
Pfam:OTU	213	354	3.3e-15	PFAM
low complexity region	754	772	N/A	INTRINSIC
low complexity region	1001	1015	N/A	INTRINSIC
low complexity region	1161	1173	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000181358

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000181821

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000189431

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000191287

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207445

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209020

Meta Mutation Damage Score

0.1054

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.6%
20x: 93.1%

Validation Efficiency

100% (79/79)

MGI Phenotype

FUNCTION: This gene encodes a deubiquitinating enzyme that interacts with valosin containing protein p97 and plays a role in the assembly of Golgi apparatus during mitosis. [provided by RefSeq, Dec 2014]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930402F06Rik	C	A	2: 35,266,309 (GRCm39)	M120I	probably damaging	Het
4933427D14Rik	A	T	11: 72,082,342 (GRCm39)	L328Q	probably damaging	Het
Adgrv1	A	C	13: 81,709,704 (GRCm39)		probably null	Het
Ankrd46	A	T	15: 36,484,279 (GRCm39)		probably benign	Het
Arhgef18	A	T	8: 3,494,979 (GRCm39)	M413L	probably benign	Het
Atp6v1e1	G	A	6: 120,781,044 (GRCm39)	T87M	probably null	Het
Bap1	T	C	14: 30,980,402 (GRCm39)		probably benign	Het
Brf1	A	G	12: 112,929,507 (GRCm39)	L385P	probably benign	Het
C1qtnf1	A	T	11: 118,338,938 (GRCm39)	N203Y	probably damaging	Het
Catsperb	A	T	12: 101,569,025 (GRCm39)	N899I	probably damaging	Het
Ccnjl	A	C	11: 43,470,718 (GRCm39)	D162A	probably damaging	Het
Cd248	A	C	19: 5,119,195 (GRCm39)	I348L	probably benign	Het
Cdc20	T	C	4: 118,293,029 (GRCm39)	T265A	probably benign	Het
Cdca5	T	A	19: 6,140,427 (GRCm39)	L196*	probably null	Het
Cdk4	T	A	10: 126,900,444 (GRCm39)		probably benign	Het
Cldn10	G	A	14: 119,025,725 (GRCm39)	G53S	possibly damaging	Het
Clec4b2	G	T	6: 123,177,999 (GRCm39)	E105*	probably null	Het
Dapk1	T	A	13: 60,909,600 (GRCm39)	D1404E	probably benign	Het
Dnah1	T	C	14: 30,989,496 (GRCm39)	Y3308C	probably damaging	Het
Dnah17	A	C	11: 117,969,419 (GRCm39)	Y2260D	probably damaging	Het
Dock8	T	G	19: 25,159,001 (GRCm39)	S1720A	probably benign	Het
Erc1	A	G	6: 119,754,947 (GRCm39)		probably null	Het
Ergic1	A	G	17: 26,848,597 (GRCm39)	I66V	probably benign	Het
Fam186a	T	C	15: 99,843,158 (GRCm39)	T1029A	possibly damaging	Het
Fat4	A	T	3: 39,034,781 (GRCm39)	Y2811F	probably damaging	Het
Flt3	A	G	5: 147,306,110 (GRCm39)	M310T	probably damaging	Het
Ganab	T	A	19: 8,892,355 (GRCm39)	C844S	probably benign	Het
Gas2l2	C	A	11: 83,320,041 (GRCm39)	V72F	probably damaging	Het
Gm14401	T	A	2: 176,778,573 (GRCm39)	C220S	probably damaging	Het
Hmmr	A	T	11: 40,619,261 (GRCm39)	V73E	probably benign	Het
Idi2l	T	G	13: 8,990,637 (GRCm39)		probably benign	Het
Ifih1	G	T	2: 62,465,358 (GRCm39)		probably benign	Het
Jak3	A	G	8: 72,138,048 (GRCm39)	E833G	probably damaging	Het
Lama2	TTTGCGCATT	TTT	10: 26,919,639 (GRCm39)		probably null	Het
Ldb1	G	A	19: 46,023,132 (GRCm39)	A217V	probably benign	Het
Lrrc8c	A	G	5: 105,755,955 (GRCm39)	T577A	probably benign	Het
Mfn1	T	A	3: 32,600,711 (GRCm39)		probably benign	Het
Mki67	G	A	7: 135,298,474 (GRCm39)	P2187S	probably damaging	Het
Mrc1	T	A	2: 14,323,952 (GRCm39)	D1096E	probably benign	Het
Msi1	A	G	5: 115,573,654 (GRCm39)		probably benign	Het
Msto1	T	A	3: 88,819,559 (GRCm39)	I152F	probably benign	Het
Myo9a	A	G	9: 59,803,800 (GRCm39)	R2060G	probably benign	Het
Nnt	A	T	13: 119,541,107 (GRCm39)	C44*	probably null	Het
Nup210l	A	G	3: 90,100,378 (GRCm39)	D1468G	probably damaging	Het
Or1j16	T	C	2: 36,530,906 (GRCm39)	L285P	probably damaging	Het
Or4c10b	A	G	2: 89,711,476 (GRCm39)	E102G	probably benign	Het
Or5d46	C	A	2: 88,174,686 (GRCm39)	C129F	possibly damaging	Het
Or7a40	T	C	16: 16,491,482 (GRCm39)	D121G	probably damaging	Het
P2rx3	G	A	2: 84,855,270 (GRCm39)	T62I	probably damaging	Het
Pabpc4l	G	T	3: 46,401,578 (GRCm39)	T22K	probably damaging	Het
Pcdha7	A	G	18: 37,108,646 (GRCm39)	D557G	probably damaging	Het
Pcdhb20	A	G	18: 37,639,298 (GRCm39)	K608R	possibly damaging	Het
Pcnx1	A	G	12: 81,964,939 (GRCm39)	S369G	probably damaging	Het
Plod1	T	C	4: 148,004,736 (GRCm39)	I455V	probably benign	Het
Prune2	A	T	19: 17,099,219 (GRCm39)	E1574D	probably benign	Het
Ptar1	T	A	19: 23,680,472 (GRCm39)	L96H	probably damaging	Het
Rabgap1	T	C	2: 37,450,583 (GRCm39)	S904P	probably benign	Het
Rps6ka4	C	T	19: 6,815,467 (GRCm39)	V176I	probably benign	Het
Rufy4	T	C	1: 74,186,822 (GRCm39)	C537R	probably damaging	Het
Runx1t1	T	A	4: 13,771,459 (GRCm39)	M1K	probably null	Het
Serinc4	T	A	2: 121,282,905 (GRCm39)	Y419F	probably damaging	Het
Serpina12	A	T	12: 104,004,056 (GRCm39)	M192K	possibly damaging	Het
Spata21	T	A	4: 140,832,261 (GRCm39)	M474K	probably damaging	Het
Stpg1	T	C	4: 135,246,676 (GRCm39)	S135P	possibly damaging	Het
Tdrkh	A	G	3: 94,336,671 (GRCm39)	D481G	probably damaging	Het
Ube2e1	A	C	14: 18,285,268 (GRCm38)	S68R	probably damaging	Het
Vmn2r79	T	C	7: 86,650,675 (GRCm39)	F154L	probably benign	Het
Vwa3b	A	G	1: 37,153,684 (GRCm39)		probably benign	Het
Xdh	C	A	17: 74,207,703 (GRCm39)	V885L	probably benign	Het
Zfp141	A	T	7: 42,125,629 (GRCm39)	V281D	probably benign	Het
Zfp317	T	A	9: 19,558,143 (GRCm39)	I119N	probably benign	Het
Zfp345	G	A	2: 150,314,608 (GRCm39)	R310C	probably benign	Het
Zfp760	G	A	17: 21,942,229 (GRCm39)	C468Y	probably benign	Het

Other mutations in Vcpip1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02341:Vcpip1	APN	1	9,795,175 (GRCm39)	missense	possibly damaging	0.75
IGL02888:Vcpip1	APN	1	9,795,011 (GRCm39)	missense	probably damaging	0.98
IGL03246:Vcpip1	APN	1	9,816,182 (GRCm39)	missense	probably benign	0.00
R0243:Vcpip1	UTSW	1	9,817,431 (GRCm39)	nonsense	probably null
R0968:Vcpip1	UTSW	1	9,816,604 (GRCm39)	missense	probably damaging	1.00
R1139:Vcpip1	UTSW	1	9,816,948 (GRCm39)	missense	probably damaging	0.98
R1230:Vcpip1	UTSW	1	9,795,449 (GRCm39)	missense	probably damaging	1.00
R1524:Vcpip1	UTSW	1	9,794,727 (GRCm39)	missense	probably damaging	1.00
R1989:Vcpip1	UTSW	1	9,815,788 (GRCm39)	missense	probably benign	0.11
R2135:Vcpip1	UTSW	1	9,818,035 (GRCm39)	missense	probably benign	0.01
R2299:Vcpip1	UTSW	1	9,815,944 (GRCm39)	missense	possibly damaging	0.71
R4692:Vcpip1	UTSW	1	9,818,299 (GRCm39)	missense	unknown
R4855:Vcpip1	UTSW	1	9,817,589 (GRCm39)	missense	probably damaging	1.00
R4883:Vcpip1	UTSW	1	9,817,423 (GRCm39)	missense	probably damaging	1.00
R4891:Vcpip1	UTSW	1	9,818,287 (GRCm39)	missense	unknown
R5141:Vcpip1	UTSW	1	9,818,302 (GRCm39)	missense	unknown
R5465:Vcpip1	UTSW	1	9,817,372 (GRCm39)	missense	probably benign	0.16
R5651:Vcpip1	UTSW	1	9,818,065 (GRCm39)	missense	probably damaging	0.99
R5664:Vcpip1	UTSW	1	9,816,604 (GRCm39)	missense	probably damaging	0.99
R6131:Vcpip1	UTSW	1	9,817,517 (GRCm39)	missense	probably damaging	0.99
R6187:Vcpip1	UTSW	1	9,795,005 (GRCm39)	missense	probably damaging	1.00
R7042:Vcpip1	UTSW	1	9,818,378 (GRCm39)	missense	unknown
R7268:Vcpip1	UTSW	1	9,816,307 (GRCm39)	missense	probably damaging	0.99
R7417:Vcpip1	UTSW	1	9,816,540 (GRCm39)	missense	probably benign	0.00
R7464:Vcpip1	UTSW	1	9,816,745 (GRCm39)	missense	probably damaging	0.99
R8138:Vcpip1	UTSW	1	9,818,334 (GRCm39)	small deletion	probably benign
R8350:Vcpip1	UTSW	1	9,794,831 (GRCm39)	missense	probably benign
R8450:Vcpip1	UTSW	1	9,794,831 (GRCm39)	missense	probably benign
R9310:Vcpip1	UTSW	1	9,817,927 (GRCm39)	missense	possibly damaging	0.93
R9359:Vcpip1	UTSW	1	9,816,049 (GRCm39)	missense	possibly damaging	0.71
R9403:Vcpip1	UTSW	1	9,816,049 (GRCm39)	missense	possibly damaging	0.71
R9404:Vcpip1	UTSW	1	9,817,856 (GRCm39)	missense	probably damaging	1.00
R9564:Vcpip1	UTSW	1	9,817,456 (GRCm39)	missense	possibly damaging	0.94
R9572:Vcpip1	UTSW	1	9,816,770 (GRCm39)	missense	possibly damaging	0.92
R9598:Vcpip1	UTSW	1	9,816,019 (GRCm39)	missense	probably benign	0.02
R9716:Vcpip1	UTSW	1	9,815,948 (GRCm39)	missense	probably benign	0.00
Z1177:Vcpip1	UTSW	1	9,817,307 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AATGACCATCTCTCCCAGTGC -3'
(R):5'- TCAAGAATGCCTCATCCCAGTG -3'

Sequencing Primer
(F):5'- CATTTCTCTGCAGGTATGAGGCC -3'
(R):5'- CATCCCAGTGCATGTGGATG -3'

Posted On

2016-03-17