Mutagenetix > Incidental Mutation

Incidental Mutation 'R4900:Flvcr2'

376111

Institutional Source

Beutler Lab

Gene Symbol

Flvcr2

Ensembl Gene

ENSMUSG00000034258

Gene Name

feline leukemia virus subgroup C cellular receptor 2

Synonyms

CCT, Mfsd7c

MMRRC Submission

042504-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.887) question?

Stock #

R4900 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

85793313-85860359 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 85829756 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Aspartic acid at position 255 (V255D)

Ref Sequence

ENSEMBL: ENSMUSP00000035569 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000040461]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000040461
AA Change: V255D

PolyPhen 2 Score 0.977 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000035569
Gene: ENSMUSG00000034258
AA Change: V255D

Domain	Start	End	E-Value	Type
Pfam:MFS_1	113	477	1.7e-30	PFAM
transmembrane domain	488	510	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000221585

Meta Mutation Damage Score

0.4539

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.5%
20x: 93.1%

Validation Efficiency

100% (84/84)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the major facilitator superfamily. The encoded transmembrane protein is a calcium transporter. Unlike the related protein feline leukemia virus subgroup C receptor 1, the protein encoded by this locus does not bind to feline leukemia virus subgroup C envelope protein. The encoded protein may play a role in development of brain vascular endothelial cells, as mutations at this locus have been associated with proliferative vasculopathy and hydranencephaly-hydrocephaly syndrome. Alternatively spliced transcript variants have been described.[provided by RefSeq, Aug 2010]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930590J08Rik	T	C	6: 91,895,091 (GRCm39)	V262A	probably benign	Het
Abtb2	A	G	2: 103,397,349 (GRCm39)	E93G	possibly damaging	Het
Adam5	A	C	8: 25,232,172 (GRCm39)		probably null	Het
Adam5	G	A	8: 25,271,619 (GRCm39)	T596I	probably damaging	Het
Adgrb2	T	A	4: 129,907,668 (GRCm39)	Y1001N	probably damaging	Het
Aox1	T	G	1: 58,344,544 (GRCm39)	S546A	probably benign	Het
Asic2	T	C	11: 81,464,280 (GRCm39)		probably benign	Het
Bcl11b	T	A	12: 107,955,957 (GRCm39)	N64I	probably damaging	Het
Cacna1g	A	G	11: 94,350,177 (GRCm39)	F556S	possibly damaging	Het
Cbl	A	G	9: 44,064,166 (GRCm39)	V790A	probably benign	Het
Cd300c2	A	T	11: 114,891,807 (GRCm39)	C22*	probably null	Het
Cdh11	C	T	8: 103,374,090 (GRCm39)		probably null	Het
Ces2g	C	T	8: 105,693,989 (GRCm39)	Q442*	probably null	Het
Cps1	A	T	1: 67,200,063 (GRCm39)	T404S	probably damaging	Het
Csf2rb2	A	T	15: 78,170,174 (GRCm39)		probably null	Het
Csmd2	A	G	4: 128,346,318 (GRCm39)	Y1526C	probably benign	Het
Cyp2a12	C	T	7: 26,730,640 (GRCm39)	Q202*	probably null	Het
Cyp2c39	G	A	19: 39,502,020 (GRCm39)	M136I	probably benign	Het
Cyp2j13	G	A	4: 95,947,280 (GRCm39)	T257I	probably damaging	Het
Dnah8	T	A	17: 30,965,949 (GRCm39)	L2427Q	probably damaging	Het
Dop1b	G	T	16: 93,560,318 (GRCm39)		probably null	Het
Entrep1	A	G	19: 23,952,790 (GRCm39)	S507P	possibly damaging	Het
Epcam	T	C	17: 87,951,049 (GRCm39)	V212A	possibly damaging	Het
Flt1	C	A	5: 147,620,749 (GRCm39)	A132S	probably benign	Het
Galc	G	T	12: 98,197,731 (GRCm39)	T326K	probably damaging	Het
Gas2l3	CACTCGTCATACT	CACT	10: 89,266,820 (GRCm39)		probably benign	Het
Gen1	A	T	12: 11,291,561 (GRCm39)	Y808N	probably benign	Het
Glis1	C	T	4: 107,476,761 (GRCm39)	A306V	probably damaging	Het
Gm10638	A	G	8: 87,473,028 (GRCm39)		probably benign	Het
Gm12789	G	A	4: 101,846,182 (GRCm39)		probably benign	Het
Gm27048	C	T	8: 81,661,228 (GRCm39)		noncoding transcript	Het
Gm4204	T	C	1: 135,160,556 (GRCm39)		noncoding transcript	Het
Gm904	A	T	13: 50,799,325 (GRCm39)	I95F	possibly damaging	Het
Gvin3	T	G	7: 106,197,793 (GRCm39)		noncoding transcript	Het
Hjurp	GT	GTT	1: 88,194,246 (GRCm39)		probably null	Het
Ints11	G	A	4: 155,972,887 (GRCm39)	D526N	probably benign	Het
Itfg2	A	G	6: 128,393,279 (GRCm39)		probably benign	Het
Jund	T	C	8: 71,152,254 (GRCm39)	V183A	probably damaging	Het
Kcnj8	A	G	6: 142,512,221 (GRCm39)	S129P	probably damaging	Het
Kcnq3	A	G	15: 65,867,259 (GRCm39)	S795P	probably damaging	Het
Lhx8	G	T	3: 154,035,925 (GRCm39)	A22E	probably benign	Het
Lrp8	A	G	4: 107,664,006 (GRCm39)		probably benign	Het
Lvrn	G	T	18: 47,026,768 (GRCm39)	A789S	probably damaging	Het
Lvrn	T	C	18: 47,014,479 (GRCm39)	S526P	probably damaging	Het
Mga	T	A	2: 119,794,535 (GRCm39)	C2622S	possibly damaging	Het
Mroh8	T	C	2: 157,070,647 (GRCm39)	E568G	probably benign	Het
Ms4a4b	C	A	19: 11,440,503 (GRCm39)		probably benign	Het
Muc2	T	C	7: 141,303,280 (GRCm39)	F99S	probably benign	Het
Myo5c	T	A	9: 75,180,825 (GRCm39)	I738N	probably damaging	Het
Naip6	A	C	13: 100,433,477 (GRCm39)	V1120G	probably damaging	Het
Ncl	T	C	1: 86,283,901 (GRCm39)	T307A	probably benign	Het
Npr1	A	T	3: 90,363,272 (GRCm39)	D869E	possibly damaging	Het
Nup93	A	G	8: 95,013,231 (GRCm39)	T36A	probably benign	Het
Olfml2b	C	A	1: 170,489,947 (GRCm39)	T189N	probably damaging	Het
Or4c12b	A	G	2: 89,647,312 (GRCm39)	N208S	possibly damaging	Het
Or8b9	T	C	9: 37,766,608 (GRCm39)	F165L	probably benign	Het
P4htm	A	C	9: 108,456,427 (GRCm39)	W458G	probably damaging	Het
Pdzrn4	G	T	15: 92,668,638 (GRCm39)	R930L	probably damaging	Het
Pgam5	G	A	5: 110,408,301 (GRCm39)	A240V	probably damaging	Het
Prex2	T	C	1: 11,220,129 (GRCm39)		probably benign	Het
Ptpru	T	G	4: 131,515,693 (GRCm39)	E897A	probably damaging	Het
Rapgef2	A	T	3: 78,981,670 (GRCm39)	N1256K	probably benign	Het
Rhbdl3	A	G	11: 80,210,439 (GRCm39)	E64G	probably benign	Het
Sel1l3	A	T	5: 53,289,184 (GRCm39)	L879Q	probably damaging	Het
Siah1a	G	T	8: 87,451,703 (GRCm39)	D260E	probably benign	Het
Skint6	T	C	4: 112,924,667 (GRCm39)	I522V	probably benign	Het
Slco4c1	G	A	1: 96,768,953 (GRCm39)	P303L	probably damaging	Het
Smok3c	T	C	5: 138,062,813 (GRCm39)	I100T	probably damaging	Het
Snx24	C	A	18: 53,518,295 (GRCm39)	Y141*	probably null	Het
Tigit	A	G	16: 43,469,594 (GRCm39)	S166P	probably damaging	Het
Tmem183a	C	T	1: 134,275,904 (GRCm39)	R324Q	probably benign	Het
Tmie	T	C	9: 110,696,001 (GRCm39)	D130G	possibly damaging	Het
Uggt1	G	A	1: 36,241,936 (GRCm39)	R333*	probably null	Het
Vmn2r111	T	C	17: 22,767,637 (GRCm39)	N620S	possibly damaging	Het
Vmn2r12	T	A	5: 109,240,852 (GRCm39)	N87I	probably damaging	Het
Vmn2r92	A	G	17: 18,404,605 (GRCm39)	D583G	probably benign	Het
Zdhhc17	T	C	10: 110,821,819 (GRCm39)	D60G	possibly damaging	Het

Other mutations in Flvcr2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00555:Flvcr2	APN	12	85,794,097 (GRCm39)	missense	possibly damaging	0.91
IGL01461:Flvcr2	APN	12	85,849,905 (GRCm39)	splice site	probably benign
IGL02191:Flvcr2	APN	12	85,832,966 (GRCm39)	nonsense	probably null
IGL02643:Flvcr2	APN	12	85,842,997 (GRCm39)	missense	possibly damaging	0.96
IGL02933:Flvcr2	APN	12	85,849,902 (GRCm39)	splice site	probably benign
pulga	UTSW	12	85,793,965 (GRCm39)	missense	possibly damaging	0.94
R1792:Flvcr2	UTSW	12	85,793,929 (GRCm39)	nonsense	probably null
R1840:Flvcr2	UTSW	12	85,849,995 (GRCm39)	missense	possibly damaging	0.91
R2402:Flvcr2	UTSW	12	85,829,777 (GRCm39)	missense	probably benign	0.12
R4120:Flvcr2	UTSW	12	85,832,903 (GRCm39)	missense	probably benign	0.31
R5417:Flvcr2	UTSW	12	85,793,965 (GRCm39)	missense	probably damaging	0.97
R5559:Flvcr2	UTSW	12	85,851,181 (GRCm39)	missense	probably benign	0.21
R5639:Flvcr2	UTSW	12	85,794,250 (GRCm39)	missense	probably benign	0.03
R5891:Flvcr2	UTSW	12	85,843,002 (GRCm39)	missense	possibly damaging	0.74
R6347:Flvcr2	UTSW	12	85,794,194 (GRCm39)	missense	possibly damaging	0.66
R6349:Flvcr2	UTSW	12	85,793,974 (GRCm39)	missense	probably benign	0.30
R7082:Flvcr2	UTSW	12	85,793,728 (GRCm39)	missense	probably benign	0.03
R7179:Flvcr2	UTSW	12	85,793,965 (GRCm39)	missense	possibly damaging	0.94
R7241:Flvcr2	UTSW	12	85,852,013 (GRCm39)	missense	probably benign
R7459:Flvcr2	UTSW	12	85,793,831 (GRCm39)	missense	probably benign	0.14
R8030:Flvcr2	UTSW	12	85,845,312 (GRCm39)	missense	probably damaging	0.97
R8200:Flvcr2	UTSW	12	85,849,922 (GRCm39)	frame shift	probably null
R8203:Flvcr2	UTSW	12	85,849,922 (GRCm39)	frame shift	probably null
R8204:Flvcr2	UTSW	12	85,849,922 (GRCm39)	frame shift	probably null
R8206:Flvcr2	UTSW	12	85,849,922 (GRCm39)	frame shift	probably null
R8207:Flvcr2	UTSW	12	85,849,922 (GRCm39)	frame shift	probably null
R8208:Flvcr2	UTSW	12	85,849,922 (GRCm39)	frame shift	probably null
R8217:Flvcr2	UTSW	12	85,849,922 (GRCm39)	frame shift	probably null
R8218:Flvcr2	UTSW	12	85,849,922 (GRCm39)	frame shift	probably null
R8384:Flvcr2	UTSW	12	85,842,967 (GRCm39)	missense	possibly damaging	0.95
R9015:Flvcr2	UTSW	12	85,829,779 (GRCm39)	missense	probably benign	0.21
R9372:Flvcr2	UTSW	12	85,793,795 (GRCm39)	missense	probably benign	0.10
R9379:Flvcr2	UTSW	12	85,850,000 (GRCm39)	missense	probably benign	0.00
R9516:Flvcr2	UTSW	12	85,793,954 (GRCm39)	missense	possibly damaging	0.70
RF013:Flvcr2	UTSW	12	85,793,960 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CATGTGTGTATAGCATGTACATGTGC -3'
(R):5'- GGGTTGACATAACTTCCCCACC -3'

Sequencing Primer
(F):5'- TCCTTCCAATGCTGGGATGACAG -3'
(R):5'- GTTGACATAACTTCCCCACCTCCTAC -3'

Posted On

2016-03-17