Mutagenetix > Incidental Mutation

Incidental Mutation 'R4868:Cnot6l'

376313

Institutional Source

Beutler Lab

Gene Symbol

Cnot6l

Ensembl Gene

ENSMUSG00000034724

Gene Name

CCR4-NOT transcription complex, subunit 6-like

Synonyms

MMRRC Submission

042478-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.511) question?

Stock #

R4868 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

96070333-96164171 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 96083023 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Histidine at position 362 (Y362H)

Ref Sequence

ENSEMBL: ENSMUSP00000113821 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000036646] [ENSMUST00000113005] [ENSMUST00000122003] [ENSMUST00000155901]

AlphaFold

Q8VEG6

Predicted Effect

probably benign
Transcript: ENSMUST00000036646

Predicted Effect

probably damaging
Transcript: ENSMUST00000113005
AA Change: Y367H

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000108629
Gene: ENSMUSG00000034724
AA Change: Y367H

Domain	Start	End	E-Value	Type
LRR	55	77	4.34e-1	SMART
LRR	78	100	1.01e-1	SMART
LRR	101	124	7.55e-1	SMART
Pfam:Exo_endo_phos	192	529	7.3e-22	PFAM
low complexity region	532	545	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000122003
AA Change: Y362H

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000113821
Gene: ENSMUSG00000034724
AA Change: Y362H

Domain	Start	End	E-Value	Type
LRR	50	72	4.34e-1	SMART
LRR	73	95	1.01e-1	SMART
LRR	96	119	7.55e-1	SMART
Pfam:Exo_endo_phos	187	433	1.3e-18	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152490

Predicted Effect

probably damaging
Transcript: ENSMUST00000155901
AA Change: Y362H

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000119415
Gene: ENSMUSG00000034724
AA Change: Y362H

Domain	Start	End	E-Value	Type
LRR	50	72	4.34e-1	SMART
LRR	73	95	1.01e-1	SMART
LRR	96	119	7.55e-1	SMART
Pfam:Exo_endo_phos	187	524	2.2e-23	PFAM
low complexity region	527	540	N/A	INTRINSIC

Meta Mutation Damage Score

0.1216

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.1%
20x: 94.7%

Validation Efficiency

99% (91/92)

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933405L10Rik	A	G	8: 105,710,097	*299W	probably null	Het
4933412E24Rik	G	A	15: 60,015,968	L208F	possibly damaging	Het
Abca8b	G	A	11: 109,974,512	A373V	probably benign	Het
Actn3	A	T	19: 4,864,454	W549R	probably benign	Het
Adamts4	C	T	1: 171,252,431		probably benign	Het
Adcy4	T	C	14: 55,773,722	I615V	probably benign	Het
Akap1	A	G	11: 88,844,553	S428P	possibly damaging	Het
Akap13	A	T	7: 75,743,504	R2476W	probably damaging	Het
Alx3	A	G	3: 107,600,627	S151G	possibly damaging	Het
Aoah	T	A	13: 20,914,981	Y243*	probably null	Het
Asap1	A	G	15: 64,094,181	V1025A	probably benign	Het
Atp8b1	A	T	18: 64,551,866	I728N	probably damaging	Het
Baz2b	C	A	2: 59,924,882	V1001L	possibly damaging	Het
Bmpr2	T	A	1: 59,870,456	S1030T	probably benign	Het
Cacna2d3	A	T	14: 28,956,786		probably null	Het
Casp3	A	T	8: 46,634,279	N87I	probably benign	Het
Ccdc171	T	A	4: 83,694,332	L995Q	probably damaging	Het
Ccdc80	T	A	16: 45,104,413	Y637N	probably damaging	Het
Ccr4	A	G	9: 114,492,833	F55L	probably benign	Het
Cmah	T	A	13: 24,464,264	V494E	probably damaging	Het
Coq6	T	C	12: 84,370,952	V222A	probably damaging	Het
Ctdspl2	C	A	2: 121,993,398	T240N	possibly damaging	Het
D430041D05Rik	T	C	2: 104,255,409	T248A	possibly damaging	Het
Dctn6	A	T	8: 34,092,076		probably benign	Het
Dhx34	T	C	7: 16,199,802	D955G	probably benign	Het
Dnaaf5	A	G	5: 139,170,186	M541V	probably benign	Het
Dnah17	A	T	11: 118,108,212	S912T	probably benign	Het
Dnah2	A	T	11: 69,463,648	V2248E	probably damaging	Het
Dysf	T	C	6: 84,179,693	W1502R	probably damaging	Het
Dzip1	A	T	14: 118,877,214	V843E	probably damaging	Het
Esp23	G	T	17: 39,074,024	T27K	probably benign	Het
Esp3	A	T	17: 40,633,529	M21L	possibly damaging	Het
Fam43b	T	A	4: 138,395,797	T71S	probably benign	Het
Fam46b	A	G	4: 133,486,082		probably null	Het
Fpgs	G	A	2: 32,692,661	R63C	probably damaging	Het
H2-M11	G	T	17: 36,548,919	W268L	probably damaging	Het
Inpp5b	T	C	4: 124,751,410	S210P	probably damaging	Het
Itsn1	T	A	16: 91,785,317	S51T	probably damaging	Het
Kctd2	G	A	11: 115,429,379	V246I	probably damaging	Het
Krt75	C	T	15: 101,568,121	G403E	probably damaging	Het
Lamp3	T	A	16: 19,701,290	T48S	probably benign	Het
Lyzl4	C	A	9: 121,583,009	V114L	probably damaging	Het
Maml3	C	A	3: 52,103,924	E74*	probably null	Het
Map2k7	G	A	8: 4,247,751		probably benign	Het
Mapk8ip3	A	G	17: 24,901,415	V883A	probably benign	Het
Mbtps1	C	T	8: 119,508,928	V1004I	probably benign	Het
Metap1	G	T	3: 138,483,089	H48Q	probably damaging	Het
Mical2	T	A	7: 112,318,624	V396E	probably damaging	Het
Mks1	T	A	11: 87,853,723		probably benign	Het
Ndst1	T	C	18: 60,695,476	T669A	probably benign	Het
Obox3	T	C	7: 15,627,310	K10R	probably damaging	Het
Olfr1014	T	G	2: 85,776,626	V14G	possibly damaging	Het
Olfr1318	T	A	2: 112,156,571	S207T	probably damaging	Het
Olfr711	C	T	7: 106,971,767	M192I	probably benign	Het
Opn3	T	C	1: 175,663,561	Y302C	probably damaging	Het
Pdzph1	A	T	17: 58,974,756	V177D	probably benign	Het
Pex5l	T	A	3: 32,952,490	I577F	probably damaging	Het
Pmpcb	T	A	5: 21,748,853	Y366*	probably null	Het
Prr14l	A	T	5: 32,829,937	M738K	probably benign	Het
Prx	T	C	7: 27,517,579	S641P	probably benign	Het
Ptchd3	A	G	11: 121,831,057	Y252C	possibly damaging	Het
Reg3a	A	G	6: 78,381,900	E27G	probably damaging	Het
Ripor2	A	G	13: 24,694,141	T300A	possibly damaging	Het
Sdf4	T	A	4: 156,009,185	S259T	probably damaging	Het
Sike1	A	G	3: 102,997,414		probably null	Het
Sis	T	G	3: 72,943,548	I606L	probably benign	Het
Slc30a9	T	C	5: 67,324,683	I94T	probably benign	Het
Slc5a4a	T	C	10: 76,178,231	I424T	probably damaging	Het
Spx	C	T	6: 142,416,390	R72*	probably null	Het
St7	C	A	6: 17,819,266	N56K	probably damaging	Het
Tcte2	C	A	17: 13,728,008	G3V	probably damaging	Het
Tgfb3	T	C	12: 86,062,181	D258G	probably benign	Het
Timeless	G	T	10: 128,247,361	G659V	probably benign	Het
Tnn	T	C	1: 160,130,873	R467G	possibly damaging	Het
Tor1b	T	C	2: 30,956,577		probably null	Het
Trank1	T	A	9: 111,365,641	L911Q	probably damaging	Het
Ttll2	C	T	17: 7,351,599	V310I	probably benign	Het
Ttyh3	A	T	5: 140,629,466	I389N	probably damaging	Het
Ube3b	T	C	5: 114,398,427	V216A	probably benign	Het
Vezf1	T	A	11: 88,074,694	V254E	probably damaging	Het
Vmn1r122	T	C	7: 21,133,302	E276G	probably benign	Het
Vmn1r167	T	A	7: 23,504,736	N285I	probably benign	Het
Vmn2r45	T	A	7: 8,481,481	I442F	probably benign	Het
Vwa8	C	A	14: 79,183,082	A1741E	probably damaging	Het
Wdr20	T	A	12: 110,738,234	V69E	probably damaging	Het
Xkr4	T	G	1: 3,216,851	Q372P	probably damaging	Het
Zcchc11	T	C	4: 108,549,220		probably benign	Het

Other mutations in Cnot6l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01346:Cnot6l	APN	5	96086246	missense	probably damaging	1.00
IGL02102:Cnot6l	APN	5	96091659	missense	probably damaging	0.98
BB005:Cnot6l	UTSW	5	96131068	missense	possibly damaging	0.95
BB015:Cnot6l	UTSW	5	96131068	missense	possibly damaging	0.95
R0443:Cnot6l	UTSW	5	96091745	splice site	probably benign
R0448:Cnot6l	UTSW	5	96080046	missense	probably benign	0.00
R1436:Cnot6l	UTSW	5	96134112	missense	probably damaging	1.00
R2198:Cnot6l	UTSW	5	96079941	missense	possibly damaging	0.79
R4240:Cnot6l	UTSW	5	96077362	missense	probably benign
R4506:Cnot6l	UTSW	5	96086174	missense	possibly damaging	0.93
R4624:Cnot6l	UTSW	5	96077211	missense	probably benign	0.05
R4627:Cnot6l	UTSW	5	96077211	missense	probably benign	0.05
R4629:Cnot6l	UTSW	5	96077211	missense	probably benign	0.05
R4936:Cnot6l	UTSW	5	96079937	missense	probably damaging	1.00
R5597:Cnot6l	UTSW	5	96131119	missense	probably damaging	1.00
R5781:Cnot6l	UTSW	5	96086165	missense	probably benign	0.31
R6142:Cnot6l	UTSW	5	96082978	missense	probably benign	0.00
R6166:Cnot6l	UTSW	5	96079940	missense	possibly damaging	0.79
R6189:Cnot6l	UTSW	5	96098277	missense	probably benign	0.18
R6382:Cnot6l	UTSW	5	96128999	missense	probably damaging	0.99
R6515:Cnot6l	UTSW	5	96161678	intron	probably benign
R6773:Cnot6l	UTSW	5	96094299	missense	probably damaging	1.00
R7326:Cnot6l	UTSW	5	96077299	missense	probably benign	0.00
R7466:Cnot6l	UTSW	5	96131128	missense	probably benign	0.01
R7832:Cnot6l	UTSW	5	96094225	missense	possibly damaging	0.90
R7928:Cnot6l	UTSW	5	96131068	missense	possibly damaging	0.95
R8310:Cnot6l	UTSW	5	96091676	missense	probably benign
R8499:Cnot6l	UTSW	5	96077317	missense	probably damaging	1.00
R8698:Cnot6l	UTSW	5	96077290	missense	probably damaging	1.00
R9029:Cnot6l	UTSW	5	96098277	missense	probably benign	0.18
R9100:Cnot6l	UTSW	5	96083016	missense	probably damaging	1.00
R9377:Cnot6l	UTSW	5	96128967	missense	probably benign	0.01
R9485:Cnot6l	UTSW	5	96082999	missense	probably damaging	0.99
R9685:Cnot6l	UTSW	5	96082890	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TAGGAGCTGGATGGTCTTCC -3'
(R):5'- CCCTTTAGCTTCTCAGATAAGTTTG -3'

Sequencing Primer
(F):5'- TCAAGACTAAATGTGAAACTGAAAGC -3'
(R):5'- TTAGCTTCTCAGATAAGTTTGAGATG -3'

Posted On

2016-03-17