Mutagenetix > Incidental Mutation

Incidental Mutation 'R4869:Rif1'

376384

Institutional Source

Beutler Lab

Gene Symbol

Rif1

Ensembl Gene

ENSMUSG00000036202

Gene Name

replication timing regulatory factor 1

Synonyms

6530403D07Rik, 5730435J01Rik, D2Ertd145e

MMRRC Submission

042479-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4869 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

52072832-52122383 bp(+) (GRCm38)

Type of Mutation

intron

DNA Base Change (assembly)

T to A at 52093611 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000108313 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000112693]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000112693

SMART Domains

Protein: ENSMUSP00000108313
Gene: ENSMUSG00000036202

Domain	Start	End	E-Value	Type
Pfam:Rif1_N	18	381	1.4e-85	PFAM
low complexity region	432	444	N/A	INTRINSIC
low complexity region	586	598	N/A	INTRINSIC
low complexity region	1018	1038	N/A	INTRINSIC
low complexity region	1180	1205	N/A	INTRINSIC
low complexity region	1310	1321	N/A	INTRINSIC
low complexity region	1423	1446	N/A	INTRINSIC
low complexity region	1576	1586	N/A	INTRINSIC
low complexity region	1677	1690	N/A	INTRINSIC
low complexity region	1702	1712	N/A	INTRINSIC
low complexity region	2176	2195	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125116

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145130

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.0%
20x: 94.3%

Validation Efficiency

99% (102/103)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that shares homology with the yeast teleomere binding protein, Rap1 interacting factor 1. This protein localizes to aberrant telomeres may be involved in DNA repair. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Apr 2010]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit embryonic lethality. Mice homozygous for a gene trap allele exhibit embryonic and postnatal lethality, reduced fertility, and decreased cell proliferation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 93 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700017B05Rik	C	A	9: 57,254,205 (GRCm38)	K943N	probably damaging	Het
Abca13	G	A	11: 9,315,434 (GRCm38)		probably null	Het
Ankub1	A	G	3: 57,690,330 (GRCm38)	L73P	probably damaging	Het
Birc6	A	G	17: 74,586,012 (GRCm38)	I982V	probably benign	Het
Cabyr	G	T	18: 12,751,818 (GRCm38)	*454L	probably null	Het
Ccdc57	C	T	11: 120,903,518 (GRCm38)		probably null	Het
Cd209c	A	G	8: 3,944,077 (GRCm38)	F128L	probably benign	Het
Cdh23	A	T	10: 60,376,934 (GRCm38)	I1566N	probably damaging	Het
Cdon	T	C	9: 35,452,904 (GRCm38)	V106A	possibly damaging	Het
Cebpa	G	T	7: 35,119,821 (GRCm38)	G135C	probably damaging	Het
Cfap65	A	G	1: 74,919,261 (GRCm38)	S896P	probably benign	Het
Ciz1	T	C	2: 32,364,235 (GRCm38)	S63P	probably damaging	Het
Clybl	G	A	14: 122,384,206 (GRCm38)	V269M	probably damaging	Het
Ctnnb1	G	T	9: 120,952,994 (GRCm38)	V358L	possibly damaging	Het
Cwh43	G	T	5: 73,428,673 (GRCm38)		probably null	Het
Cyp2d10	G	A	15: 82,403,766 (GRCm38)	R379C	probably benign	Het
Dab2ip	C	A	2: 35,720,037 (GRCm38)	R727S	probably damaging	Het
Dmrt1	T	A	19: 25,505,855 (GRCm38)	M1K	probably null	Het
Dock1	A	T	7: 134,734,071 (GRCm38)	I65F	probably damaging	Het
Ercc2	T	C	7: 19,386,807 (GRCm38)	V155A	probably damaging	Het
Exph5	A	C	9: 53,376,239 (GRCm38)	D1540A	possibly damaging	Het
Fat3	T	A	9: 16,377,477 (GRCm38)	H250L	probably damaging	Het
Fbxw10	C	A	11: 62,862,731 (GRCm38)	A517E	probably damaging	Het
Furin	A	T	7: 80,396,979 (GRCm38)	N176K	probably damaging	Het
Gabrb3	A	G	7: 57,792,459 (GRCm38)		probably benign	Het
Gabrg2	A	T	11: 41,920,404 (GRCm38)	S305T	probably damaging	Het
Gas6	G	T	8: 13,475,086 (GRCm38)	S299R	possibly damaging	Het
Gga3	G	T	11: 115,586,285 (GRCm38)		probably benign	Het
Gle1	A	G	2: 29,936,020 (GRCm38)	E37G	possibly damaging	Het
Gm6614	T	C	6: 141,987,766 (GRCm38)	D431G	probably damaging	Het
Gm7964	A	G	7: 83,756,142 (GRCm38)	D80G	possibly damaging	Het
Gne	C	T	4: 44,055,204 (GRCm38)		probably null	Het
Grid2	G	T	6: 64,429,740 (GRCm38)	G695W	probably damaging	Het
H2-M10.6	A	T	17: 36,812,533 (GRCm38)	M40L	probably benign	Het
Hectd4	G	T	5: 121,322,672 (GRCm38)	V905L	possibly damaging	Het
Isyna1	C	A	8: 70,596,762 (GRCm38)	S441R	possibly damaging	Het
Kcnh3	C	T	15: 99,242,032 (GRCm38)	S933L	probably benign	Het
Knl1	T	C	2: 119,072,351 (GRCm38)	I1511T	possibly damaging	Het
Krt73	T	C	15: 101,796,398 (GRCm38)	E351G	probably damaging	Het
Lipo4	C	T	19: 33,501,553 (GRCm38)		probably null	Het
Llgl1	T	A	11: 60,707,210 (GRCm38)	L360*	probably null	Het
Map2k5	G	A	9: 63,322,243 (GRCm38)	R169*	probably null	Het
Muc19	A	T	15: 91,897,716 (GRCm38)		noncoding transcript	Het
Muc4	G	A	16: 32,754,836 (GRCm38)		probably benign	Het
Myh4	A	G	11: 67,252,664 (GRCm38)	E1074G	probably damaging	Het
Naip5	C	T	13: 100,245,131 (GRCm38)	G210E	probably damaging	Het
Nalcn	A	G	14: 123,599,884 (GRCm38)	S23P	probably benign	Het
Nepro	T	A	16: 44,730,173 (GRCm38)	M176K	probably damaging	Het
Nlrp6	G	A	7: 140,924,093 (GRCm38)	C704Y	probably damaging	Het
Notch1	A	G	2: 26,471,179 (GRCm38)	S1100P	probably benign	Het
Nrxn3	A	G	12: 88,795,582 (GRCm38)	E133G	possibly damaging	Het
Parp9	T	C	16: 35,956,904 (GRCm38)	L406S	probably damaging	Het
Peak1	G	T	9: 56,227,592 (GRCm38)	A155D	probably benign	Het
Piezo1	G	A	8: 122,487,545 (GRCm38)	H1628Y	probably benign	Het
Piwil2	A	G	14: 70,395,362 (GRCm38)	V587A	probably benign	Het
Pkn2	A	G	3: 142,803,618 (GRCm38)	Y722H	probably damaging	Het
Plch2	A	T	4: 154,989,428 (GRCm38)	I834K	probably benign	Het
Pld1	A	G	3: 28,109,802 (GRCm38)	T795A	possibly damaging	Het
Plekhh1	A	G	12: 79,050,386 (GRCm38)	S103G	probably benign	Het
Ppl	T	C	16: 5,104,889 (GRCm38)	Y246C	probably damaging	Het
Prpf40b	G	A	15: 99,309,845 (GRCm38)		probably benign	Het
Prr14l	A	G	5: 32,828,833 (GRCm38)	L1106P	probably damaging	Het
Ptbp3	T	A	4: 59,524,443 (GRCm38)	I28F	possibly damaging	Het
Ptrh2	A	T	11: 86,689,805 (GRCm38)	K83*	probably null	Het
Rai1	T	C	11: 60,186,762 (GRCm38)	S551P	probably damaging	Het
Rapgefl1	A	T	11: 98,851,109 (GRCm38)	Q633L	probably damaging	Het
Rb1cc1	T	C	1: 6,215,021 (GRCm38)		probably benign	Het
Rnf141	A	G	7: 110,825,350 (GRCm38)	Y101H	probably damaging	Het
Rnf219	A	G	14: 104,478,816 (GRCm38)	I707T	probably damaging	Het
Rttn	T	A	18: 89,043,014 (GRCm38)	L1102*	probably null	Het
Sall4	G	A	2: 168,755,717 (GRCm38)	S401F	probably damaging	Het
Sec11c	T	C	18: 65,801,470 (GRCm38)	I36T	probably benign	Het
Sel1l	A	G	12: 91,814,054 (GRCm38)		probably benign	Het
Setd1a	T	C	7: 127,797,604 (GRCm38)		probably benign	Het
Sez6l2	C	T	7: 126,961,842 (GRCm38)	P433L	probably benign	Het
Sgf29	T	C	7: 126,649,375 (GRCm38)		probably benign	Het
Slc47a1	A	G	11: 61,362,694 (GRCm38)	V305A	probably benign	Het
Sun2	T	C	15: 79,728,386 (GRCm38)		probably benign	Het
Tecta	T	C	9: 42,375,534 (GRCm38)	S609G	probably benign	Het
Tex45	G	A	8: 3,487,148 (GRCm38)	S498N	probably damaging	Het
Tmprss6	T	A	15: 78,443,680 (GRCm38)		probably null	Het
Tns1	T	C	1: 73,952,615 (GRCm38)	H968R	probably benign	Het
Tomm34	G	A	2: 164,054,717 (GRCm38)	A270V	probably damaging	Het
Tpo	T	C	12: 30,103,365 (GRCm38)	K330R	probably benign	Het
Ttn	T	A	2: 76,712,493 (GRCm38)	Y33383F	probably damaging	Het
Unc13c	G	T	9: 73,680,434 (GRCm38)	A1439D	probably benign	Het
Vcp	C	T	4: 42,993,691 (GRCm38)	R147H	probably benign	Het
Vps13d	A	G	4: 145,128,042 (GRCm38)	L2272P	probably damaging	Het
Wdfy3	A	G	5: 101,894,921 (GRCm38)	L1988P	probably damaging	Het
Wwc2	A	G	8: 47,920,678 (GRCm38)	F51S	probably damaging	Het
Zfp454	C	T	11: 50,873,153 (GRCm38)	C373Y	probably damaging	Het
Zfp853	A	T	5: 143,288,293 (GRCm38)	V473E	probably damaging	Het
Zfp959	A	T	17: 55,897,228 (GRCm38)	R85S	possibly damaging	Het

Other mutations in Rif1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00465:Rif1	APN	2	52,121,007 (GRCm38)	missense	probably damaging	0.96
IGL00711:Rif1	APN	2	52,111,070 (GRCm38)	missense	probably benign	0.00
IGL00721:Rif1	APN	2	52,119,117 (GRCm38)	missense	probably damaging	1.00
IGL01085:Rif1	APN	2	52,085,140 (GRCm38)	missense	possibly damaging	0.71
IGL01093:Rif1	APN	2	52,095,948 (GRCm38)	missense	probably damaging	1.00
IGL01107:Rif1	APN	2	52,111,303 (GRCm38)	missense	probably benign	0.00
IGL01138:Rif1	APN	2	52,111,522 (GRCm38)	missense	probably damaging	1.00
IGL01844:Rif1	APN	2	52,112,543 (GRCm38)	missense	probably benign	0.07
IGL02441:Rif1	APN	2	52,105,515 (GRCm38)	missense	probably benign	0.00
IGL02448:Rif1	APN	2	52,116,696 (GRCm38)	missense	probably damaging	0.99
IGL02563:Rif1	APN	2	52,077,065 (GRCm38)	missense	probably damaging	1.00
IGL02704:Rif1	APN	2	52,093,576 (GRCm38)	missense	probably damaging	1.00
IGL02946:Rif1	APN	2	52,110,125 (GRCm38)	nonsense	probably null
IGL03060:Rif1	APN	2	52,112,137 (GRCm38)	missense	probably damaging	0.97
IGL03206:Rif1	APN	2	52,103,622 (GRCm38)	missense	probably damaging	1.00
IGL03263:Rif1	APN	2	52,090,261 (GRCm38)	missense	probably damaging	0.99
IGL03267:Rif1	APN	2	52,076,988 (GRCm38)	missense	possibly damaging	0.94
IGL03280:Rif1	APN	2	52,112,599 (GRCm38)	missense	probably benign	0.32
hifi	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
nietzsche	UTSW	2	52,077,020 (GRCm38)	missense	probably benign	0.08
PIT4305001:Rif1	UTSW	2	52,111,958 (GRCm38)	missense
R0017:Rif1	UTSW	2	52,116,674 (GRCm38)	missense	probably benign	0.18
R0017:Rif1	UTSW	2	52,116,674 (GRCm38)	missense	probably benign	0.18
R0060:Rif1	UTSW	2	52,111,117 (GRCm38)	missense	probably damaging	1.00
R0060:Rif1	UTSW	2	52,111,117 (GRCm38)	missense	probably damaging	1.00
R0104:Rif1	UTSW	2	52,110,092 (GRCm38)	missense	possibly damaging	0.77
R0268:Rif1	UTSW	2	52,090,286 (GRCm38)	critical splice donor site	probably null
R0276:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0278:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0288:Rif1	UTSW	2	52,110,013 (GRCm38)	missense	probably damaging	1.00
R0314:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0345:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0346:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0383:Rif1	UTSW	2	52,085,141 (GRCm38)	missense	probably damaging	0.96
R0384:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0387:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0388:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0456:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0477:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0505:Rif1	UTSW	2	52,110,737 (GRCm38)	missense	probably damaging	0.99
R0510:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0511:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0512:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0633:Rif1	UTSW	2	52,112,563 (GRCm38)	missense	probably benign	0.00
R0637:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0638:Rif1	UTSW	2	52,111,588 (GRCm38)	missense	probably benign	0.12
R0666:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0675:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0707:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0726:Rif1	UTSW	2	52,110,353 (GRCm38)	missense	possibly damaging	0.52
R0743:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0744:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0938:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0939:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0940:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0941:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0942:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R0943:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1006:Rif1	UTSW	2	52,085,029 (GRCm38)	missense	probably damaging	0.99
R1052:Rif1	UTSW	2	52,111,562 (GRCm38)	missense	probably benign	0.01
R1061:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1175:Rif1	UTSW	2	52,107,628 (GRCm38)	unclassified	probably benign
R1183:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1184:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1271:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1332:Rif1	UTSW	2	52,078,314 (GRCm38)	missense	probably benign	0.06
R1336:Rif1	UTSW	2	52,078,314 (GRCm38)	missense	probably benign	0.06
R1351:Rif1	UTSW	2	52,111,555 (GRCm38)	missense	possibly damaging	0.74
R1517:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1527:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1560:Rif1	UTSW	2	52,111,131 (GRCm38)	missense	probably damaging	1.00
R1563:Rif1	UTSW	2	52,073,223 (GRCm38)	missense	probably damaging	0.99
R1571:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1625:Rif1	UTSW	2	52,103,640 (GRCm38)	missense	probably benign	0.25
R1679:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1689:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1731:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1744:Rif1	UTSW	2	52,112,392 (GRCm38)	missense	possibly damaging	0.56
R1746:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1748:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R1831:Rif1	UTSW	2	52,078,495 (GRCm38)	nonsense	probably null
R1902:Rif1	UTSW	2	52,116,673 (GRCm38)	missense	possibly damaging	0.93
R1964:Rif1	UTSW	2	52,098,409 (GRCm38)	missense	probably benign	0.01
R1978:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2000:Rif1	UTSW	2	52,081,298 (GRCm38)	missense	probably damaging	0.99
R2030:Rif1	UTSW	2	52,092,346 (GRCm38)	missense	probably damaging	1.00
R2056:Rif1	UTSW	2	52,093,576 (GRCm38)	missense	probably damaging	1.00
R2106:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2109:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2125:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2126:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2145:Rif1	UTSW	2	52,111,400 (GRCm38)	missense	possibly damaging	0.63
R2152:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2153:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2213:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2327:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2512:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2513:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2516:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2520:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R2905:Rif1	UTSW	2	52,098,504 (GRCm38)	missense	probably damaging	0.99
R3005:Rif1	UTSW	2	52,082,764 (GRCm38)	missense	probably damaging	1.00
R3155:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R3156:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R3429:Rif1	UTSW	2	52,110,324 (GRCm38)	unclassified	probably benign
R3707:Rif1	UTSW	2	52,093,580 (GRCm38)	missense	probably damaging	1.00
R3907:Rif1	UTSW	2	52,112,545 (GRCm38)	missense	probably benign	0.03
R3978:Rif1	UTSW	2	52,116,747 (GRCm38)	critical splice donor site	probably null
R4023:Rif1	UTSW	2	52,121,087 (GRCm38)	missense	probably benign	0.01
R4052:Rif1	UTSW	2	52,098,471 (GRCm38)	nonsense	probably null
R4668:Rif1	UTSW	2	52,111,952 (GRCm38)	missense	probably benign	0.01
R4674:Rif1	UTSW	2	52,106,942 (GRCm38)	missense	probably null	1.00
R4715:Rif1	UTSW	2	52,073,139 (GRCm38)	utr 5 prime	probably benign
R4766:Rif1	UTSW	2	52,098,934 (GRCm38)	missense	probably damaging	1.00
R4783:Rif1	UTSW	2	52,112,747 (GRCm38)	missense	probably damaging	0.96
R4785:Rif1	UTSW	2	52,112,747 (GRCm38)	missense	probably damaging	0.96
R4911:Rif1	UTSW	2	52,110,518 (GRCm38)	missense	probably damaging	0.98
R4951:Rif1	UTSW	2	52,084,986 (GRCm38)	splice site	probably null
R5044:Rif1	UTSW	2	52,109,928 (GRCm38)	missense	probably damaging	0.99
R5088:Rif1	UTSW	2	52,092,295 (GRCm38)	missense	possibly damaging	0.91
R5151:Rif1	UTSW	2	52,120,309 (GRCm38)	missense	probably damaging	1.00
R5187:Rif1	UTSW	2	52,081,289 (GRCm38)	missense	probably damaging	1.00
R5222:Rif1	UTSW	2	52,077,020 (GRCm38)	missense	probably benign	0.08
R5243:Rif1	UTSW	2	52,111,824 (GRCm38)	missense	possibly damaging	0.86
R5436:Rif1	UTSW	2	52,120,971 (GRCm38)	intron	probably benign
R5476:Rif1	UTSW	2	52,089,595 (GRCm38)	missense	probably damaging	1.00
R5496:Rif1	UTSW	2	52,098,916 (GRCm38)	missense	probably damaging	1.00
R5641:Rif1	UTSW	2	52,121,158 (GRCm38)	missense	possibly damaging	0.80
R5883:Rif1	UTSW	2	52,105,639 (GRCm38)	critical splice donor site	probably null
R5987:Rif1	UTSW	2	52,095,844 (GRCm38)	missense	probably damaging	1.00
R5990:Rif1	UTSW	2	52,095,844 (GRCm38)	missense	probably damaging	1.00
R5992:Rif1	UTSW	2	52,095,844 (GRCm38)	missense	probably damaging	1.00
R6019:Rif1	UTSW	2	52,095,844 (GRCm38)	missense	probably damaging	1.00
R6020:Rif1	UTSW	2	52,095,844 (GRCm38)	missense	probably damaging	1.00
R6255:Rif1	UTSW	2	52,085,053 (GRCm38)	missense	probably damaging	1.00
R6342:Rif1	UTSW	2	52,119,156 (GRCm38)	missense	probably damaging	0.97
R6364:Rif1	UTSW	2	52,107,669 (GRCm38)	missense	probably damaging	0.97
R6747:Rif1	UTSW	2	52,078,263 (GRCm38)	splice site	probably null
R6928:Rif1	UTSW	2	52,095,961 (GRCm38)	missense	probably damaging	1.00
R6954:Rif1	UTSW	2	52,112,691 (GRCm38)	missense	probably benign	0.00
R7003:Rif1	UTSW	2	52,076,989 (GRCm38)	missense	probably benign	0.06
R7310:Rif1	UTSW	2	52,105,619 (GRCm38)	missense	probably benign	0.12
R7549:Rif1	UTSW	2	52,078,507 (GRCm38)	missense	possibly damaging	0.52
R7603:Rif1	UTSW	2	52,076,175 (GRCm38)	missense	probably damaging	1.00
R7673:Rif1	UTSW	2	52,088,654 (GRCm38)	missense	probably damaging	1.00
R7741:Rif1	UTSW	2	52,085,141 (GRCm38)	missense	probably damaging	0.96
R7777:Rif1	UTSW	2	52,116,356 (GRCm38)	missense	probably benign	0.00
R7910:Rif1	UTSW	2	52,078,387 (GRCm38)	nonsense	probably null
R7962:Rif1	UTSW	2	52,074,276 (GRCm38)	missense	probably damaging	1.00
R8264:Rif1	UTSW	2	52,090,278 (GRCm38)	missense	noncoding transcript
R8390:Rif1	UTSW	2	52,110,923 (GRCm38)	missense	probably damaging	1.00
R8479:Rif1	UTSW	2	52,112,551 (GRCm38)	missense	possibly damaging	0.52
R8490:Rif1	UTSW	2	52,110,999 (GRCm38)	missense	probably damaging	0.96
R8762:Rif1	UTSW	2	52,111,730 (GRCm38)	missense
R8785:Rif1	UTSW	2	52,110,481 (GRCm38)	missense	probably benign	0.06
R8890:Rif1	UTSW	2	52,098,863 (GRCm38)	missense	probably damaging	0.99
R9081:Rif1	UTSW	2	52,110,977 (GRCm38)	missense	probably damaging	0.99
R9225:Rif1	UTSW	2	52,111,850 (GRCm38)	missense	probably benign	0.22
R9284:Rif1	UTSW	2	52,108,552 (GRCm38)	missense	probably benign	0.00
R9300:Rif1	UTSW	2	52,111,139 (GRCm38)	missense	probably damaging	1.00
R9366:Rif1	UTSW	2	52,120,344 (GRCm38)	missense
R9477:Rif1	UTSW	2	52,111,330 (GRCm38)	missense	probably benign	0.02
R9522:Rif1	UTSW	2	52,081,299 (GRCm38)	missense	probably damaging	1.00
R9573:Rif1	UTSW	2	52,110,454 (GRCm38)	missense	probably benign	0.29
R9630:Rif1	UTSW	2	52,089,595 (GRCm38)	missense	probably damaging	1.00
X0064:Rif1	UTSW	2	52,094,633 (GRCm38)	missense	probably damaging	0.96
X0064:Rif1	UTSW	2	52,074,315 (GRCm38)	missense	probably benign	0.00
Z1177:Rif1	UTSW	2	52,088,648 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTGAACTATGAGTAATGGTTACGTC -3'
(R):5'- TAGCAGTAGCCAGTAATATTATGCC -3'

Sequencing Primer
(F):5'- ATGGTTACGTCTAGAAAATTGCC -3'
(R):5'- TATTGGCATAGCACTGCC -3'

Posted On

2016-03-17