Mutagenetix > Incidental Mutation

Incidental Mutation 'R4872:N4bp1'

376663

Institutional Source

Beutler Lab

Gene Symbol

N4bp1

Ensembl Gene

ENSMUSG00000031652

Gene Name

NEDD4 binding protein 1

Synonyms

MMRRC Submission

042482-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4872 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

87567764-87612489 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 87587676 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 421 (T421A)

Ref Sequence

ENSEMBL: ENSMUSP00000034074 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034074]

AlphaFold

Q6A037

Predicted Effect

probably benign
Transcript: ENSMUST00000034074
AA Change: T421A

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000034074
Gene: ENSMUSG00000031652
AA Change: T421A

Domain	Start	End	E-Value	Type
low complexity region	29	43	N/A	INTRINSIC
low complexity region	375	390	N/A	INTRINSIC
low complexity region	548	571	N/A	INTRINSIC
Pfam:RNase_Zc3h12a	614	767	4.7e-59	PFAM

Meta Mutation Damage Score

0.0600

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.1%

Validation Efficiency

98% (81/83)

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcd2	C	A	15: 91,075,514 (GRCm39)	V100L	probably benign	Het
Acad11	G	A	9: 103,963,465 (GRCm39)		probably benign	Het
Actb	C	T	5: 142,891,307 (GRCm39)		probably benign	Het
Ano9	G	A	7: 140,687,117 (GRCm39)	A374V	probably damaging	Het
Baz2b	T	C	2: 59,773,103 (GRCm39)		probably null	Het
Bltp3a	G	T	17: 28,109,110 (GRCm39)	D1110Y	probably benign	Het
Bpifb9b	T	A	2: 154,155,551 (GRCm39)	L350Q	probably damaging	Het
Cd27	T	A	6: 125,211,281 (GRCm39)		probably null	Het
Cd72	A	G	4: 43,449,563 (GRCm39)		probably benign	Het
Cdadc1	A	T	14: 59,801,973 (GRCm39)	S516T	probably benign	Het
Chst5	T	A	8: 112,617,192 (GRCm39)	I143F	possibly damaging	Het
Col20a1	T	C	2: 180,639,156 (GRCm39)	V452A	possibly damaging	Het
Cox11	C	A	11: 90,535,229 (GRCm39)	Q227K	probably benign	Het
Cpa6	A	G	1: 10,665,843 (GRCm39)		probably null	Het
Dnase1l1	C	T	X: 73,320,644 (GRCm39)		probably null	Het
Dpm2	T	C	2: 32,461,203 (GRCm39)		probably benign	Het
Dync1h1	C	A	12: 110,624,560 (GRCm39)	T3700N	probably damaging	Het
Frem1	A	C	4: 82,881,387 (GRCm39)	N1273K	probably damaging	Het
Fry	T	C	5: 150,317,704 (GRCm39)		probably null	Het
Gm10306	G	T	4: 94,445,069 (GRCm39)		probably benign	Het
Gm5565	T	C	5: 146,094,913 (GRCm39)	T278A	probably benign	Het
Gm8180	A	G	14: 44,019,802 (GRCm39)	I40T	probably benign	Het
Iah1	T	C	12: 21,367,426 (GRCm39)	V44A	probably benign	Het
Iqgap3	C	T	3: 88,020,435 (GRCm39)	P360S	probably damaging	Het
Klhl28	T	A	12: 65,003,896 (GRCm39)	I206F	possibly damaging	Het
Krt13	A	G	11: 100,012,332 (GRCm39)		probably benign	Het
Lipo2	T	A	19: 33,726,914 (GRCm39)	D41V	probably benign	Het
Lrig2	C	G	3: 104,398,842 (GRCm39)	V229L	possibly damaging	Het
Lrrc32	C	T	7: 98,147,727 (GRCm39)	T169I	probably damaging	Het
Lrriq1	T	C	10: 103,014,649 (GRCm39)	N1053S	possibly damaging	Het
Mfng	C	T	15: 78,648,588 (GRCm39)	R163H	probably benign	Het
Mgat4c	G	C	10: 102,224,599 (GRCm39)	R271P	probably damaging	Het
Mylk	A	G	16: 34,735,360 (GRCm39)	N780S	possibly damaging	Het
Nat8f1	T	C	6: 85,887,295 (GRCm39)	T222A	probably benign	Het
Nsun2	T	C	13: 69,691,992 (GRCm39)		probably benign	Het
Oas2	T	A	5: 120,876,599 (GRCm39)	D448V	probably damaging	Het
Or10al7	C	A	17: 38,366,467 (GRCm39)	V6F	probably benign	Het
Or2l13b	A	T	16: 19,349,383 (GRCm39)	C96S	probably damaging	Het
Or5ak22	T	C	2: 85,230,772 (GRCm39)	Y35C	probably damaging	Het
Pgm2l1	T	A	7: 99,877,204 (GRCm39)	L25Q	probably damaging	Het
Pigp	A	T	16: 94,166,309 (GRCm39)	V133D	probably benign	Het
Pnkp	C	T	7: 44,511,827 (GRCm39)	S113L	probably damaging	Het
Pomt2	C	T	12: 87,156,881 (GRCm39)	D752N	possibly damaging	Het
Ppat	T	C	5: 77,074,640 (GRCm39)	K65E	probably damaging	Het
Ptprn2	T	C	12: 117,125,314 (GRCm39)	L616P	probably damaging	Het
Rad54l2	A	G	9: 106,595,091 (GRCm39)	S289P	probably damaging	Het
Rbm39	G	A	2: 156,019,266 (GRCm39)	R31C	possibly damaging	Het
Rhbdf2	C	A	11: 116,492,771 (GRCm39)	V417L	probably benign	Het
Rnf157	T	A	11: 116,246,298 (GRCm39)	E255D	possibly damaging	Het
Rpl6l	A	T	10: 110,962,304 (GRCm39)		noncoding transcript	Het
Sec24c	A	G	14: 20,743,813 (GRCm39)	D1006G	probably damaging	Het
Sh3bp1	G	T	15: 78,792,237 (GRCm39)	A401S	probably benign	Het
Slc17a8	A	T	10: 89,412,367 (GRCm39)	D539E	probably benign	Het
Slc38a9	T	A	13: 112,826,098 (GRCm39)	S136R	probably damaging	Het
Smoc2	A	C	17: 14,589,295 (GRCm39)	T255P	probably benign	Het
Smyd2	T	C	1: 189,628,847 (GRCm39)	D152G	probably damaging	Het
Stab1	A	G	14: 30,862,350 (GRCm39)	V2328A	probably damaging	Het
Taar2	A	G	10: 23,816,591 (GRCm39)	I44V	probably benign	Het
Tbc1d4	T	C	14: 101,682,144 (GRCm39)	K1251E	probably benign	Het
Thada	G	A	17: 84,754,027 (GRCm39)	L315F	probably damaging	Het
Trbv14	T	C	6: 41,112,259 (GRCm39)	S19P	probably benign	Het
Ttc39c	T	C	18: 12,820,173 (GRCm39)		probably benign	Het
Ttc39d	A	G	17: 80,524,527 (GRCm39)	I395M	probably benign	Het
Ttn	T	C	2: 76,548,728 (GRCm39)	E31891G	probably damaging	Het
Ubr3	T	C	2: 69,800,527 (GRCm39)	V950A	probably damaging	Het
Usp9y	T	A	Y: 1,307,920 (GRCm39)	K2305N	probably damaging	Het
Vmn1r158	G	A	7: 22,490,179 (GRCm39)	T10I	possibly damaging	Het
Vmn2r129	G	T	4: 156,686,692 (GRCm39)		noncoding transcript	Het
Vmn2r78	T	A	7: 86,603,916 (GRCm39)	I698K	possibly damaging	Het
Vmn2r86	G	T	10: 130,289,460 (GRCm39)	T145K	probably damaging	Het
Zfp51	T	C	17: 21,684,933 (GRCm39)	V516A	probably benign	Het
Zfp654	A	T	16: 64,606,145 (GRCm39)	S686T	probably benign	Het
Zfp846	T	A	9: 20,502,111 (GRCm39)	C55S	probably benign	Het

Other mutations in N4bp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00653:N4bp1	APN	8	87,588,354 (GRCm39)	missense	probably benign	0.01
IGL00659:N4bp1	APN	8	87,588,430 (GRCm39)	missense	probably damaging	1.00
IGL01484:N4bp1	APN	8	87,571,400 (GRCm39)	missense	probably damaging	0.99
IGL01788:N4bp1	APN	8	87,587,624 (GRCm39)	missense	probably benign	0.06
IGL01989:N4bp1	APN	8	87,575,115 (GRCm39)	missense	probably damaging	1.00
IGL02619:N4bp1	APN	8	87,587,529 (GRCm39)	missense	probably benign	0.01
IGL03290:N4bp1	APN	8	87,575,161 (GRCm39)	missense	probably benign	0.31
Acorn	UTSW	8	87,588,534 (GRCm39)	nonsense	probably null
oak	UTSW	8	87,588,424 (GRCm39)	nonsense	probably null
Squirrel	UTSW	8	87,578,337 (GRCm39)	missense	probably damaging	1.00
Stash	UTSW	8	87,587,052 (GRCm39)	critical splice donor site	probably null
walnut	UTSW	8	87,573,540 (GRCm39)	missense	probably damaging	1.00
winter	UTSW	8	87,588,311 (GRCm39)	missense	probably benign
R0760:N4bp1	UTSW	8	87,573,540 (GRCm39)	missense	probably damaging	1.00
R1202:N4bp1	UTSW	8	87,571,515 (GRCm39)	missense	probably benign	0.02
R1653:N4bp1	UTSW	8	87,571,576 (GRCm39)	missense	probably benign	0.10
R1878:N4bp1	UTSW	8	87,588,169 (GRCm39)	missense	probably damaging	0.98
R2325:N4bp1	UTSW	8	87,575,088 (GRCm39)	missense	probably damaging	1.00
R2442:N4bp1	UTSW	8	87,588,668 (GRCm39)	missense	probably damaging	1.00
R2867:N4bp1	UTSW	8	87,588,033 (GRCm39)	missense	probably benign	0.02
R2867:N4bp1	UTSW	8	87,588,033 (GRCm39)	missense	probably benign	0.02
R2926:N4bp1	UTSW	8	87,588,424 (GRCm39)	nonsense	probably null
R3625:N4bp1	UTSW	8	87,578,337 (GRCm39)	missense	probably damaging	1.00
R3689:N4bp1	UTSW	8	87,587,184 (GRCm39)	missense	probably damaging	1.00
R3863:N4bp1	UTSW	8	87,587,055 (GRCm39)	missense	probably benign	0.13
R4902:N4bp1	UTSW	8	87,588,311 (GRCm39)	missense	probably benign
R4965:N4bp1	UTSW	8	87,578,314 (GRCm39)	missense	possibly damaging	0.69
R5070:N4bp1	UTSW	8	87,587,165 (GRCm39)	missense	probably damaging	0.98
R5392:N4bp1	UTSW	8	87,587,048 (GRCm39)	splice site	probably null
R5719:N4bp1	UTSW	8	87,578,312 (GRCm39)	missense	probably damaging	1.00
R6280:N4bp1	UTSW	8	87,579,794 (GRCm39)	missense	possibly damaging	0.68
R6292:N4bp1	UTSW	8	87,579,867 (GRCm39)	missense	probably damaging	0.99
R6350:N4bp1	UTSW	8	87,588,596 (GRCm39)	missense	probably damaging	0.99
R6543:N4bp1	UTSW	8	87,588,534 (GRCm39)	nonsense	probably null
R6965:N4bp1	UTSW	8	87,571,461 (GRCm39)	missense	probably damaging	1.00
R7120:N4bp1	UTSW	8	87,587,495 (GRCm39)	missense	probably benign	0.01
R7172:N4bp1	UTSW	8	87,587,052 (GRCm39)	critical splice donor site	probably null
R7791:N4bp1	UTSW	8	87,579,831 (GRCm39)	missense	probably damaging	0.99
R8084:N4bp1	UTSW	8	87,587,636 (GRCm39)	missense	probably benign	0.28
R8220:N4bp1	UTSW	8	87,571,315 (GRCm39)	makesense	probably null
R8523:N4bp1	UTSW	8	87,579,789 (GRCm39)	missense	probably damaging	1.00
R8753:N4bp1	UTSW	8	87,575,085 (GRCm39)	missense	probably damaging	1.00
R9445:N4bp1	UTSW	8	87,587,238 (GRCm39)	nonsense	probably null
R9464:N4bp1	UTSW	8	87,587,165 (GRCm39)	missense	probably damaging	0.98
X0067:N4bp1	UTSW	8	87,588,548 (GRCm39)	missense	probably damaging	1.00
Z1177:N4bp1	UTSW	8	87,579,787 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- GCTTTGAACCCCAGATTTCCTG -3'
(R):5'- TCTAAGCCCCGATGGAAAAG -3'

Sequencing Primer
(F):5'- GAACCCCAGATTTCCTGTTTTTG -3'
(R):5'- TCCCAAGAGATTGTTGAAAAGGTC -3'

Posted On

2016-03-17