Mutagenetix > Incidental Mutation

Incidental Mutation 'R4873:Sp9'

376807

Institutional Source

Beutler Lab

Gene Symbol

Sp9

Ensembl Gene

ENSMUSG00000068859

Gene Name

trans-acting transcription factor 9

Synonyms

MMRRC Submission

042483-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.689) question?

Stock #

R4873 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

73094809-73106115 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 73103962 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 172 (V172A)

Ref Sequence

ENSEMBL: ENSMUSP00000088322 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000090813]

AlphaFold

Q64HY3

Predicted Effect

possibly damaging
Transcript: ENSMUST00000090813
AA Change: V172A

PolyPhen 2 Score 0.861 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000088322
Gene: ENSMUSG00000068859
AA Change: V172A

Domain	Start	End	E-Value	Type
low complexity region	53	65	N/A	INTRINSIC
low complexity region	71	88	N/A	INTRINSIC
low complexity region	92	103	N/A	INTRINSIC
low complexity region	233	257	N/A	INTRINSIC
low complexity region	268	306	N/A	INTRINSIC
ZnF_C2H2	332	356	2.63e0	SMART
ZnF_C2H2	362	386	1.84e-4	SMART
ZnF_C2H2	392	414	5.99e-4	SMART
low complexity region	416	427	N/A	INTRINSIC
low complexity region	452	472	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147133

Meta Mutation Damage Score

0.0721

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 93.9%

Validation Efficiency

98% (40/41)

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ak1	A	T	2: 32,521,189 (GRCm39)	E119D	probably benign	Het
Alox5	A	T	6: 116,390,811 (GRCm39)		probably null	Het
Atad5	T	C	11: 80,011,515 (GRCm39)	V1294A	probably damaging	Het
BB019430	A	G	10: 58,539,865 (GRCm39)		noncoding transcript	Het
Bbs9	T	C	9: 22,490,011 (GRCm39)	F261L	probably benign	Het
Catsperb	A	T	12: 101,554,244 (GRCm39)	N646I	possibly damaging	Het
Ccdc112	A	G	18: 46,429,356 (GRCm39)	I114T	probably damaging	Het
Cecr2	T	C	6: 120,727,877 (GRCm39)	L340P	probably damaging	Het
Ces2e	T	A	8: 105,653,817 (GRCm39)	V85E	probably damaging	Het
Cnpy2	C	A	10: 128,161,964 (GRCm39)	T79K	probably damaging	Het
Cntn4	G	A	6: 106,414,874 (GRCm39)	R135H	possibly damaging	Het
Cyp3a16	C	A	5: 145,389,659 (GRCm39)	M235I	probably benign	Het
Dll3	A	G	7: 27,995,860 (GRCm39)	C314R	probably damaging	Het
Dnah7c	A	G	1: 46,728,085 (GRCm39)	N2928D	probably benign	Het
Dnase1l1	C	T	X: 73,320,644 (GRCm39)		probably null	Het
Dqx1	C	A	6: 83,037,993 (GRCm39)	D460E	probably benign	Het
Dync1h1	C	A	12: 110,624,560 (GRCm39)	T3700N	probably damaging	Het
Ehbp1	A	G	11: 22,051,164 (GRCm39)	C438R	probably damaging	Het
Ehd3	T	G	17: 74,112,299 (GRCm39)	V21G	probably damaging	Het
Ero1b	G	A	13: 12,619,325 (GRCm39)	V440I	probably damaging	Het
Fpgt	G	A	3: 154,793,550 (GRCm39)	A159V	probably damaging	Het
Gcn1	T	C	5: 115,714,229 (GRCm39)	L123P	possibly damaging	Het
Gm14496	A	T	2: 181,639,226 (GRCm39)	R439W	probably damaging	Het
Gm4353	G	C	7: 115,683,648 (GRCm39)	P49R	probably damaging	Het
Gsdmc2	C	T	15: 63,700,101 (GRCm39)	A224T	probably benign	Het
Hnf1a	T	C	5: 115,108,732 (GRCm39)	T58A	probably benign	Het
Igkv4-80	A	C	6: 68,993,649 (GRCm39)	S81A	probably benign	Het
Kcns1	T	C	2: 164,010,021 (GRCm39)	Y246C	probably damaging	Het
Kif26b	A	G	1: 178,742,892 (GRCm39)	E549G	probably benign	Het
Krt9	T	C	11: 100,080,863 (GRCm39)	I330V	probably benign	Het
Lair1	A	T	7: 4,032,033 (GRCm39)	S25T	probably benign	Het
Lhx4	T	C	1: 155,581,013 (GRCm39)	T171A	possibly damaging	Het
Luzp2	A	G	7: 54,816,996 (GRCm39)	I149V	possibly damaging	Het
Mcoln1	T	A	8: 3,557,422 (GRCm39)	S143T	probably benign	Het
Mcph1	A	G	8: 18,675,574 (GRCm39)		probably null	Het
Mgat5	G	A	1: 127,396,986 (GRCm39)	V578M	probably damaging	Het
Mis18bp1	G	A	12: 65,208,209 (GRCm39)	T168M	probably benign	Het
Mroh2a	G	T	1: 88,182,657 (GRCm39)	R1195L	possibly damaging	Het
Myom1	T	C	17: 71,379,114 (GRCm39)	V626A	probably damaging	Het
Naa80	C	T	9: 107,460,818 (GRCm39)	R238C	probably damaging	Het
Ncam1	T	C	9: 49,418,921 (GRCm39)		probably benign	Het
Nlrp2	A	T	7: 5,301,858 (GRCm39)	F211L	probably benign	Het
Or10a49	A	T	7: 108,467,993 (GRCm39)	F123I	probably damaging	Het
Or10q12	T	A	19: 13,746,126 (GRCm39)	M140K	probably damaging	Het
Or2ad1	T	A	13: 21,326,450 (GRCm39)	Y259F	probably damaging	Het
Osbpl11	G	A	16: 33,054,863 (GRCm39)	V649I	probably benign	Het
Oscar	A	T	7: 3,619,016 (GRCm39)		probably null	Het
Pax8	T	A	2: 24,331,652 (GRCm39)	M144L	probably benign	Het
Pcnt	T	C	10: 76,205,688 (GRCm39)	T2555A	probably benign	Het
Plat	T	A	8: 23,258,466 (GRCm39)	I23K	probably benign	Het
Plpp2	G	A	10: 79,366,763 (GRCm39)	T51M	probably damaging	Het
Pnkp	C	T	7: 44,511,827 (GRCm39)	S113L	probably damaging	Het
Prl7c1	T	C	13: 27,957,742 (GRCm39)	M233V	probably benign	Het
Prox1	A	C	1: 189,894,319 (GRCm39)	F42C	probably damaging	Het
Pwwp2b	A	T	7: 138,835,978 (GRCm39)	Q473L	possibly damaging	Het
Rims4	A	T	2: 163,707,443 (GRCm39)	N127K	probably null	Het
Scn1a	T	C	2: 66,158,820 (GRCm39)	T367A	possibly damaging	Het
Slc23a2	A	G	2: 131,898,800 (GRCm39)	I579T	possibly damaging	Het
Spta1	T	A	1: 174,003,396 (GRCm39)	L109Q	probably damaging	Het
Synj2	A	T	17: 6,038,343 (GRCm39)		probably benign	Het
Tcstv2c	T	C	13: 120,616,206 (GRCm39)	V15A	probably damaging	Het
Tnrc18	A	T	5: 142,750,932 (GRCm39)	M1216K	unknown	Het
Tpst2	T	A	5: 112,457,687 (GRCm39)	Y69*	probably null	Het
Tpx2	C	A	2: 152,735,535 (GRCm39)	A721E	probably benign	Het
Trmt1l	A	G	1: 151,330,755 (GRCm39)	T591A	probably benign	Het
Tubgcp4	T	A	2: 121,015,330 (GRCm39)		probably benign	Het
Ubiad1	T	C	4: 148,528,556 (GRCm39)	T118A	possibly damaging	Het
Unc13c	T	C	9: 73,424,566 (GRCm39)	T2017A	probably damaging	Het
Vmn1r59	G	T	7: 5,457,108 (GRCm39)	N217K	probably benign	Het
Vmn2r87	T	C	10: 130,308,367 (GRCm39)	I624V	probably damaging	Het
Wdr4	A	G	17: 31,718,129 (GRCm39)	V315A	probably benign	Het
Xpo7	T	C	14: 70,914,256 (GRCm39)		probably null	Het
Zfp827	T	A	8: 79,787,403 (GRCm39)	W190R	probably damaging	Het
Zfp971	A	G	2: 177,674,940 (GRCm39)	T180A	probably benign	Het
Zfp980	G	A	4: 145,428,653 (GRCm39)	G461S	probably benign	Het

Other mutations in Sp9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03129:Sp9	APN	2	73,103,865 (GRCm39)	missense	probably benign	0.00
R0604:Sp9	UTSW	2	73,103,982 (GRCm39)	missense	probably benign	0.00
R0718:Sp9	UTSW	2	73,104,171 (GRCm39)	missense	possibly damaging	0.70
R3423:Sp9	UTSW	2	73,104,315 (GRCm39)	missense	probably benign	0.00
R3747:Sp9	UTSW	2	73,104,652 (GRCm39)	missense	probably damaging	0.98
R4335:Sp9	UTSW	2	73,104,633 (GRCm39)	missense	probably damaging	1.00
R4875:Sp9	UTSW	2	73,103,962 (GRCm39)	missense	possibly damaging	0.86
R5341:Sp9	UTSW	2	73,104,858 (GRCm39)	missense	possibly damaging	0.92
R5389:Sp9	UTSW	2	73,104,641 (GRCm39)	missense	probably damaging	0.99
R5891:Sp9	UTSW	2	73,104,595 (GRCm39)	missense	probably damaging	1.00
R6938:Sp9	UTSW	2	73,103,616 (GRCm39)	missense	probably damaging	0.99
R7092:Sp9	UTSW	2	73,104,115 (GRCm39)	missense	probably damaging	0.99
R7699:Sp9	UTSW	2	73,103,724 (GRCm39)	missense	probably damaging	0.98
R8336:Sp9	UTSW	2	73,104,796 (GRCm39)	missense	possibly damaging	0.86
R8809:Sp9	UTSW	2	73,104,019 (GRCm39)	missense	probably damaging	1.00
R8900:Sp9	UTSW	2	73,103,863 (GRCm39)	missense	probably benign	0.03
R9057:Sp9	UTSW	2	73,103,613 (GRCm39)	missense	probably damaging	1.00
R9225:Sp9	UTSW	2	73,103,839 (GRCm39)	nonsense	probably null
R9335:Sp9	UTSW	2	73,104,621 (GRCm39)	missense	probably damaging	0.99
R9462:Sp9	UTSW	2	73,104,243 (GRCm39)	missense	probably benign	0.23
Z1088:Sp9	UTSW	2	73,103,574 (GRCm39)	missense	possibly damaging	0.94
Z1176:Sp9	UTSW	2	73,103,800 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- GACTATGGCGGCCTTTTCTC -3'
(R):5'- ACGTCTTGCCGTACACCTTG -3'

Sequencing Primer
(F):5'- TTCTCCAACTCGGCGGC -3'
(R):5'- CGAAATCATAGCGCTGGCG -3'

Posted On

2016-03-17