Mutagenetix > Incidental Mutation

Incidental Mutation 'R4510:Gga2'

377727

Institutional Source

Beutler Lab

Gene Symbol

Gga2

Ensembl Gene

ENSMUSG00000030872

Gene Name

golgi associated, gamma adaptin ear containing, ARF binding protein 2

Synonyms

1200007E24Rik

MMRRC Submission

041585-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4510 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

121585945-121620421 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 121620301 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Methionine at position 4 (T4M)

Ref Sequence

ENSEMBL: ENSMUSP00000115581 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033160] [ENSMUST00000124566]

AlphaFold

Q6P5E6

Predicted Effect

unknown
Transcript: ENSMUST00000033160
AA Change: T4M

SMART Domains

Protein: ENSMUSP00000033160
Gene: ENSMUSG00000030872
AA Change: T4M

Domain	Start	End	E-Value	Type
low complexity region	13	28	N/A	INTRINSIC
VHS	29	162	2.45e-58	SMART
Pfam:GAT	241	318	2.2e-20	PFAM
low complexity region	320	338	N/A	INTRINSIC
Alpha_adaptinC2	471	595	8.68e-39	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000124566
AA Change: T4M

SMART Domains

Protein: ENSMUSP00000115581
Gene: ENSMUSG00000030872
AA Change: T4M

Domain	Start	End	E-Value	Type
low complexity region	13	28	N/A	INTRINSIC
VHS	29	162	2.45e-58	SMART
Pfam:GAT	225	326	1.3e-30	PFAM
Alpha_adaptinC2	471	595	8.68e-39	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131081

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145277

Meta Mutation Damage Score

0.0869

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.1%
20x: 94.9%

Validation Efficiency

96% (50/52)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the Golgi-localized, gamma adaptin ear-containing, ARF-binding (GGA) family. This family includes ubiquitous coat proteins that regulate the trafficking of proteins between the trans-Golgi network and the lysosome. These proteins share an amino-terminal VHS domain which mediates sorting of the mannose 6-phosphate receptors at the trans-Golgi network. They also contain a carboxy-terminal region with homology to the ear domain of gamma-adaptins. This family member may play a significant role in cargo molecules regulation and clathrin-coated vesicle assembly. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a gene trapped allele exhibit complete embryonic lethality. Mice homozygous for a different gene trapped allele show decreased birth weight, hypoglycemia and partial neonatal lethality, with all remaining mice dying within the first three weeks of life. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9330159F19Rik	T	A	10: 29,100,819 (GRCm39)	D397E	probably benign	Het
Abcc10	A	G	17: 46,618,136 (GRCm39)	F1005L	probably damaging	Het
Ackr4	T	C	9: 103,975,930 (GRCm39)	E339G	probably benign	Het
Adam39	G	T	8: 41,279,328 (GRCm39)	C573F	probably damaging	Het
Anks1b	A	G	10: 90,346,652 (GRCm39)	T651A	probably benign	Het
Aoc1	C	A	6: 48,884,740 (GRCm39)	H594Q	probably damaging	Het
Arid1a	A	C	4: 133,423,010 (GRCm39)		probably benign	Het
Atp4a	G	T	7: 30,423,678 (GRCm39)	E928*	probably null	Het
Atp5pf	T	C	16: 84,624,862 (GRCm39)	D104G	probably benign	Het
Atp8b5	A	G	4: 43,320,629 (GRCm39)	T206A	probably damaging	Het
Atrn	G	A	2: 130,777,497 (GRCm39)	W182*	probably null	Het
Bltp2	T	C	11: 78,168,154 (GRCm39)	S1530P	possibly damaging	Het
Cacna1e	G	A	1: 154,437,579 (GRCm39)	T257I	probably damaging	Het
Caskin1	G	A	17: 24,725,602 (GRCm39)	S1296N	probably benign	Het
Crebrf	A	G	17: 26,961,938 (GRCm39)	Y345C	probably benign	Het
Cyp26b1	G	A	6: 84,551,473 (GRCm39)	R248W	probably damaging	Het
Dclk3	C	A	9: 111,297,060 (GRCm39)	H201Q	probably benign	Het
Ddx17	A	T	15: 79,422,793 (GRCm39)	V315E	probably damaging	Het
Dhrs11	T	C	11: 84,716,342 (GRCm39)	*51W	probably null	Het
Fgfr4	C	A	13: 55,309,328 (GRCm39)	P455Q	possibly damaging	Het
Gabbr1	A	G	17: 37,380,103 (GRCm39)	K697E	probably damaging	Het
Gcnt1	G	A	19: 17,307,641 (GRCm39)	T28I	probably benign	Het
Gm12185	T	A	11: 48,799,305 (GRCm39)	H396L	possibly damaging	Het
Gm21976	A	G	13: 98,441,839 (GRCm39)	R123G	probably benign	Het
Hecw1	A	C	13: 14,531,776 (GRCm39)	V166G	probably damaging	Het
Hpx	A	G	7: 105,241,295 (GRCm39)	V372A	possibly damaging	Het
Igkv2-109	A	G	6: 68,279,962 (GRCm39)	Y61C	probably damaging	Het
Igsf1	A	G	X: 48,875,050 (GRCm39)	F789S	probably damaging	Het
Il4ra	A	G	7: 125,175,280 (GRCm39)	D496G	possibly damaging	Het
Ilf3	A	G	9: 21,310,511 (GRCm39)	T547A	possibly damaging	Het
Insrr	C	A	3: 87,715,978 (GRCm39)	P558T	possibly damaging	Het
Ints9	A	G	14: 65,266,381 (GRCm39)	D411G	possibly damaging	Het
Irak3	T	A	10: 119,981,813 (GRCm39)	H393L	probably damaging	Het
Isx	G	A	8: 75,600,298 (GRCm39)	M10I	probably benign	Het
Itga11	A	G	9: 62,668,870 (GRCm39)	D709G	probably damaging	Het
Kcng2	G	T	18: 80,338,930 (GRCm39)	R453S	probably benign	Het
Kif5b	A	G	18: 6,214,011 (GRCm39)	V664A	probably benign	Het
Lalba	A	G	15: 98,380,422 (GRCm39)	L44P	probably benign	Het
Ldlrad1	T	G	4: 107,066,715 (GRCm39)	F17V	probably benign	Het
Lnx1	C	T	5: 74,780,853 (GRCm39)	D382N	probably damaging	Het
Lrp1	T	C	10: 127,429,717 (GRCm39)	Y451C	probably damaging	Het
Lrp2	A	T	2: 69,310,406 (GRCm39)	N2722K	possibly damaging	Het
Mctp1	G	A	13: 76,973,391 (GRCm39)	V431I	probably benign	Het
Mmrn2	T	C	14: 34,125,016 (GRCm39)	F866L	possibly damaging	Het
Mylk2	A	G	2: 152,759,330 (GRCm39)	E367G	probably damaging	Het
Nfatc1	A	G	18: 80,678,794 (GRCm39)	S865P	probably damaging	Het
Nol6	G	C	4: 41,123,526 (GRCm39)	T74R	probably damaging	Het
Notch2	T	C	3: 98,053,637 (GRCm39)	M2100T	probably benign	Het
Parp1	A	G	1: 180,418,841 (GRCm39)	K667R	possibly damaging	Het
Phlda3	A	G	1: 135,694,400 (GRCm39)	T72A	probably damaging	Het
Polg	T	C	7: 79,105,270 (GRCm39)	Q758R	probably benign	Het
Polq	G	A	16: 36,868,925 (GRCm39)	R765H	probably damaging	Het
Pramel19	A	T	4: 101,798,757 (GRCm39)	M243L	probably benign	Het
Prkd1	T	C	12: 50,439,762 (GRCm39)	D355G	possibly damaging	Het
Prpf8	T	C	11: 75,382,652 (GRCm39)	Y398H	probably damaging	Het
Ripk1	T	C	13: 34,210,731 (GRCm39)	Y309H	probably damaging	Het
Rngtt	A	T	4: 33,339,032 (GRCm39)	Q279L	possibly damaging	Het
Rusf1	A	T	7: 127,875,312 (GRCm39)	F319Y	probably damaging	Het
Samd4	T	A	14: 47,315,042 (GRCm39)	V114D	probably benign	Het
Sec23ip	G	A	7: 128,380,900 (GRCm39)	E956K	probably damaging	Het
Slc4a1ap	A	T	5: 31,684,747 (GRCm39)	T128S	probably benign	Het
Slc5a11	A	T	7: 122,834,858 (GRCm39)	I6F	probably benign	Het
Slc6a19	A	C	13: 73,832,094 (GRCm39)	L494R	probably damaging	Het
Slc6a21	A	G	7: 44,936,713 (GRCm39)	D189G	probably damaging	Het
Slc7a1	G	T	5: 148,277,372 (GRCm39)	A381D	probably damaging	Het
Smc4	T	A	3: 68,923,980 (GRCm39)		probably null	Het
Stk19	T	C	17: 35,051,504 (GRCm39)	E17G	probably damaging	Het
Tekt5	A	C	16: 10,175,877 (GRCm39)	V556G	probably benign	Het
Tenm4	T	C	7: 96,544,070 (GRCm39)	F2029L	probably benign	Het
Thnsl1	T	C	2: 21,217,236 (GRCm39)	V330A	probably damaging	Het
Tnfrsf21	A	G	17: 43,375,910 (GRCm39)	D432G	probably damaging	Het
Tnip1	T	A	11: 54,817,616 (GRCm39)	S244C	probably benign	Het
Tnrc6c	A	T	11: 117,633,784 (GRCm39)	N1294I	possibly damaging	Het
Trpm3	A	G	19: 22,965,381 (GRCm39)	I1625M	probably benign	Het
Ttn	A	T	2: 76,575,773 (GRCm39)	V25040E	probably damaging	Het
Vwa5a	A	G	9: 38,633,853 (GRCm39)	N19D	possibly damaging	Het
Washc2	A	T	6: 116,197,517 (GRCm39)	D250V	probably damaging	Het
Xpo1	A	G	11: 23,237,401 (GRCm39)	T755A	possibly damaging	Het
Zfp462	C	T	4: 55,008,934 (GRCm39)	T300I	possibly damaging	Het
Zfp937	A	C	2: 150,080,431 (GRCm39)	T154P	probably damaging	Het
Zzef1	A	G	11: 72,778,996 (GRCm39)	D1819G	probably benign	Het

Other mutations in Gga2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01519:Gga2	APN	7	121,601,411 (GRCm39)	missense	probably damaging	1.00
IGL01577:Gga2	APN	7	121,589,006 (GRCm39)	missense	probably damaging	1.00
IGL01584:Gga2	APN	7	121,590,761 (GRCm39)	missense	probably benign
IGL01671:Gga2	APN	7	121,594,079 (GRCm39)	missense	probably benign	0.01
IGL01680:Gga2	APN	7	121,597,299 (GRCm39)	missense	probably benign	0.06
IGL02745:Gga2	APN	7	121,607,592 (GRCm39)	missense	probably damaging	1.00
R0122:Gga2	UTSW	7	121,590,797 (GRCm39)	missense	probably damaging	1.00
R0218:Gga2	UTSW	7	121,598,123 (GRCm39)	missense	possibly damaging	0.46
R1367:Gga2	UTSW	7	121,598,138 (GRCm39)	nonsense	probably null
R1774:Gga2	UTSW	7	121,611,444 (GRCm39)	missense	probably damaging	0.98
R4127:Gga2	UTSW	7	121,601,943 (GRCm39)	missense	probably damaging	1.00
R6319:Gga2	UTSW	7	121,601,389 (GRCm39)	missense	possibly damaging	0.92
R6395:Gga2	UTSW	7	121,607,661 (GRCm39)	splice site	probably null
R6486:Gga2	UTSW	7	121,601,411 (GRCm39)	missense	probably damaging	1.00
R6952:Gga2	UTSW	7	121,598,111 (GRCm39)	missense	probably benign	0.00
R7035:Gga2	UTSW	7	121,588,939 (GRCm39)	missense	probably damaging	1.00
R7320:Gga2	UTSW	7	121,601,326 (GRCm39)	missense	probably benign
R7454:Gga2	UTSW	7	121,601,369 (GRCm39)	missense	probably benign	0.00
R7593:Gga2	UTSW	7	121,589,672 (GRCm39)	missense	probably benign	0.00
R7602:Gga2	UTSW	7	121,596,553 (GRCm39)	missense	probably benign	0.05
R7638:Gga2	UTSW	7	121,603,157 (GRCm39)	missense	probably damaging	1.00
R7736:Gga2	UTSW	7	121,589,747 (GRCm39)	missense	probably damaging	1.00
R8032:Gga2	UTSW	7	121,620,210 (GRCm39)	critical splice donor site	probably null
R8803:Gga2	UTSW	7	121,597,002 (GRCm39)	missense	probably benign	0.01
R8817:Gga2	UTSW	7	121,590,845 (GRCm39)	nonsense	probably null
R9420:Gga2	UTSW	7	121,603,195 (GRCm39)	missense	probably damaging	1.00
R9515:Gga2	UTSW	7	121,611,448 (GRCm39)	missense	probably damaging	1.00
R9660:Gga2	UTSW	7	121,606,494 (GRCm39)	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- AGAATCCCCTGGGTGAGTCTAG -3'
(R):5'- GCTTGGCTTTTGACCTTTCAAG -3'

Sequencing Primer
(F):5'- TGGGTGAGTCTAGAGGCCC -3'
(R):5'- AAAGACCTCGTGAGTTGGAG -3'

Posted On

2016-03-25