Mutagenetix > Incidental Mutation

Incidental Mutation 'R4911:Pigk'

379491

Institutional Source

Beutler Lab

Gene Symbol

Pigk

Ensembl Gene

ENSMUSG00000039047

Gene Name

phosphatidylinositol glycan anchor biosynthesis, class K

Synonyms

3000001O05Rik

MMRRC Submission

042513-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.817) question?

Stock #

R4911 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

152419718-152548705 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 152445841 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 151 (S151P)

Ref Sequence

ENSEMBL: ENSMUSP00000123772 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045029] [ENSMUST00000159899] [ENSMUST00000161596] [ENSMUST00000162642] [ENSMUST00000200224]

AlphaFold

Q9CXY9

Predicted Effect

probably damaging
Transcript: ENSMUST00000045029
AA Change: S151P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000045351
Gene: ENSMUSG00000039047
AA Change: S151P

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
Pfam:Peptidase_C13	45	183	2.4e-25	PFAM
Pfam:Peptidase_C13	203	353	2.2e-17	PFAM
transmembrane domain	411	430	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000051510

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159045

Predicted Effect

probably damaging
Transcript: ENSMUST00000159899
AA Change: S151P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000123772
Gene: ENSMUSG00000039047
AA Change: S151P

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
Pfam:Peptidase_C13	45	306	1.6e-47	PFAM
transmembrane domain	364	383	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000161596
AA Change: S151P

PolyPhen 2 Score 0.805 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000123753
Gene: ENSMUSG00000039047
AA Change: S151P

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
Pfam:Peptidase_C13	45	306	5.5e-48	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000162642
AA Change: S151P

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000123899
Gene: ENSMUSG00000039047
AA Change: S151P

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
Pfam:Peptidase_C13	45	306	1.5e-47	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162835

Predicted Effect

probably benign
Transcript: ENSMUST00000200224

SMART Domains

Protein: ENSMUSP00000142966
Gene: ENSMUSG00000039047

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC

Meta Mutation Damage Score

0.2639

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.5%
20x: 89.7%

Validation Efficiency

97% (149/153)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the cysteine protease family C13 that is involved in glycosylphosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is a glycolipid found on many blood cells and serves to anchor proteins to the cell surface. This protein is a member of the multisubunit enzyme, GPI transamidase and is thought to be its enzymatic component. GPI transamidase mediates GPI anchoring in the endoplasmic reticulum, by catalyzing the transfer of fully assembled GPI units to proteins. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 132 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aacs	A	G	5: 125,583,224 (GRCm39)	D260G	possibly damaging	Het
Aadacl4	T	A	4: 144,340,362 (GRCm39)	L29H	probably damaging	Het
Abca7	T	C	10: 79,848,022 (GRCm39)		probably null	Het
Adgre1	G	A	17: 57,754,832 (GRCm39)	M643I	possibly damaging	Het
Adgrl2	A	T	3: 148,596,099 (GRCm39)	M79K	probably damaging	Het
Ankrd55	T	A	13: 112,459,573 (GRCm39)		probably null	Het
Aopep	A	T	13: 63,318,753 (GRCm39)		probably null	Het
Arhgap21	A	G	2: 20,863,800 (GRCm39)	I1257T	probably damaging	Het
Arhgap26	T	A	18: 39,126,690 (GRCm39)		probably benign	Het
Arhgap39	A	G	15: 76,622,005 (GRCm39)	S199P	probably damaging	Het
Arhgef5	A	G	6: 43,249,762 (GRCm39)	D171G	probably benign	Het
Atp7a	T	C	X: 105,163,980 (GRCm39)	V1305A	probably damaging	Het
B3gnt3	T	A	8: 72,145,578 (GRCm39)	R263S	probably benign	Het
B9d1	A	C	11: 61,398,497 (GRCm39)	D59A	probably benign	Het
Bag2	A	T	1: 33,787,357 (GRCm39)	I55N	probably benign	Het
Bank1	T	C	3: 135,990,004 (GRCm39)	I29V	probably benign	Het
Bbs2	A	T	8: 94,815,743 (GRCm39)	D174E	probably damaging	Het
Bmp8b	T	C	4: 123,009,030 (GRCm39)	W203R	probably damaging	Het
Cacnb2	A	T	2: 14,986,151 (GRCm39)	E359D	possibly damaging	Het
Camp	T	A	9: 109,676,651 (GRCm39)		probably null	Het
Casp4	C	T	9: 5,328,580 (GRCm39)		probably benign	Het
Ccdc110	A	T	8: 46,395,944 (GRCm39)	T612S	probably benign	Het
Cd209b	T	A	8: 3,976,640 (GRCm39)		probably null	Het
Cemip	T	C	7: 83,632,461 (GRCm39)	D367G	probably damaging	Het
Cers5	T	A	15: 99,644,960 (GRCm39)	N131I	probably damaging	Het
Cfhr4	T	G	1: 139,702,301 (GRCm39)	D61A	probably damaging	Het
Chd5	T	G	4: 152,445,129 (GRCm39)	V370G	probably damaging	Het
Cipc	C	A	12: 86,999,531 (GRCm39)	Q20K	probably benign	Het
Cnr2	T	A	4: 135,644,512 (GRCm39)	F197I	possibly damaging	Het
Col7a1	G	A	9: 108,804,287 (GRCm39)	G2233S	unknown	Het
Dcdc2b	T	A	4: 129,505,060 (GRCm39)	I125F	possibly damaging	Het
Ddi2	A	G	4: 141,411,713 (GRCm39)	S400P	probably benign	Het
Ddx31	C	A	2: 28,794,696 (GRCm39)	T664K	probably benign	Het
Dhx30	C	A	9: 109,929,992 (GRCm39)	G35C	probably damaging	Het
Dmxl2	G	A	9: 54,318,937 (GRCm39)	T1576I	probably damaging	Het
Dnah1	T	C	14: 31,017,280 (GRCm39)	Y1510C	probably damaging	Het
Dnah2	C	T	11: 69,389,930 (GRCm39)		probably null	Het
Dock10	C	A	1: 80,583,953 (GRCm39)	G163C	probably damaging	Het
Edar	T	C	10: 58,457,146 (GRCm39)	N144S	probably benign	Het
Elavl2	T	A	4: 91,196,915 (GRCm39)	E54D	possibly damaging	Het
Enam	T	G	5: 88,650,173 (GRCm39)	S561A	probably benign	Het
Ercc5	C	A	1: 44,206,031 (GRCm39)	H315N	possibly damaging	Het
Esp31	A	G	17: 38,955,552 (GRCm39)	E65G	possibly damaging	Het
Faap100	T	C	11: 120,262,939 (GRCm39)	I806M	probably benign	Het
Fbxw21	T	C	9: 108,974,731 (GRCm39)	Y263C	probably damaging	Het
Fsip2	T	A	2: 82,811,837 (GRCm39)	S2719T	possibly damaging	Het
Fv1	T	C	4: 147,953,875 (GRCm39)	V147A	probably benign	Het
Gal	T	C	19: 3,461,590 (GRCm39)	E65G	probably benign	Het
Galnt2l	A	G	8: 123,807,343 (GRCm39)		probably benign	Het
Galnt6	T	C	15: 100,614,059 (GRCm39)	T81A	probably benign	Het
Gcc2	A	G	10: 58,106,261 (GRCm39)	E399G	probably damaging	Het
Gfi1b	A	T	2: 28,500,114 (GRCm39)	C306S	probably damaging	Het
Gm10654	T	A	8: 71,384,496 (GRCm39)		noncoding transcript	Het
Gm4953	T	A	1: 158,995,929 (GRCm39)		noncoding transcript	Het
Gorasp2	T	C	2: 70,518,683 (GRCm39)		probably benign	Het
Gse1	T	C	8: 121,295,205 (GRCm39)		probably benign	Het
H2-D1	A	G	17: 35,484,973 (GRCm39)	E278G	probably damaging	Het
Herc2	T	C	7: 55,877,640 (GRCm39)	L4569P	probably damaging	Het
Hgs	T	A	11: 120,368,028 (GRCm39)	S246T	probably damaging	Het
Hs2st1	T	C	3: 144,170,843 (GRCm39)	T110A	probably benign	Het
Hydin	A	G	8: 111,322,070 (GRCm39)	Y4574C	probably benign	Het
Ighv1-23	C	A	12: 114,728,372 (GRCm39)	V17F	possibly damaging	Het
Ighv8-14	A	T	12: 115,772,185 (GRCm39)		noncoding transcript	Het
Igsf21	C	T	4: 139,761,934 (GRCm39)	R248H	probably benign	Het
Il22b	T	C	10: 118,130,894 (GRCm39)	M1V	probably null	Het
Il23r	T	C	6: 67,400,545 (GRCm39)	N595S	probably benign	Het
Il5ra	G	T	6: 106,692,629 (GRCm39)	P372Q	probably damaging	Het
Inppl1	A	G	7: 101,481,516 (GRCm39)	V222A	possibly damaging	Het
Ints10	T	C	8: 69,279,964 (GRCm39)	V697A	probably damaging	Het
Isg15	T	A	4: 156,284,217 (GRCm39)	T104S	probably benign	Het
Kif11	A	G	19: 37,406,385 (GRCm39)	T983A	probably benign	Het
Kif3b	A	T	2: 153,159,212 (GRCm39)	K338*	probably null	Het
Kpna2	T	A	11: 106,881,545 (GRCm39)	I362F	probably damaging	Het
Lama2	G	A	10: 27,014,923 (GRCm39)	T1595M	probably damaging	Het
Lrrc36	A	G	8: 106,153,567 (GRCm39)	T126A	probably benign	Het
Lrrk1	T	A	7: 65,945,202 (GRCm39)	D604V	probably damaging	Het
Map7d1	T	C	4: 126,130,484 (GRCm39)	K409E	probably damaging	Het
Mast2	T	C	4: 116,210,254 (GRCm39)	T110A	probably benign	Het
Micall2	G	A	5: 139,702,580 (GRCm39)	T221M	probably damaging	Het
Morc2b	T	A	17: 33,356,351 (GRCm39)	N474Y	probably damaging	Het
Myo1e	T	A	9: 70,250,378 (GRCm39)	M528K	probably benign	Het
Nlrp1c-ps	G	T	11: 71,151,195 (GRCm39)		noncoding transcript	Het
Nostrin	T	C	2: 68,991,486 (GRCm39)	S160P	possibly damaging	Het
Nup133	T	C	8: 124,653,870 (GRCm39)	R530G	possibly damaging	Het
Or2f2	T	A	6: 42,767,138 (GRCm39)	L55H	probably damaging	Het
Or5p64	T	C	7: 107,855,244 (GRCm39)	I34V	possibly damaging	Het
Or8c16	A	G	9: 38,130,392 (GRCm39)	E91G	probably damaging	Het
Pabpc4l	A	T	3: 46,400,597 (GRCm39)	M349K	possibly damaging	Het
Pah	G	A	10: 87,406,129 (GRCm39)	G256S	probably benign	Het
Plcd4	A	C	1: 74,603,572 (GRCm39)	T658P	possibly damaging	Het
Pld4	A	T	12: 112,730,951 (GRCm39)	S178C	probably benign	Het
Polr1a	G	A	6: 71,886,213 (GRCm39)	E23K	possibly damaging	Het
Pomt1	T	C	2: 32,131,691 (GRCm39)	S127P	probably damaging	Het
Pon2	A	G	6: 5,269,029 (GRCm39)	V215A	possibly damaging	Het
Ppp3cb	A	T	14: 20,559,508 (GRCm39)	M416K	probably damaging	Het
Prdm1	A	T	10: 44,318,048 (GRCm39)	N273K	possibly damaging	Het
Prg4	T	A	1: 150,331,574 (GRCm39)		probably benign	Het
Prkn	G	T	17: 11,059,359 (GRCm39)		probably benign	Het
Ptch1	G	A	13: 63,670,866 (GRCm39)	T888M	probably damaging	Het
Pusl1	T	G	4: 155,975,899 (GRCm39)		probably benign	Het
Rapgef6	A	T	11: 54,513,143 (GRCm39)	E122D	probably damaging	Het
Rif1	C	T	2: 52,000,530 (GRCm39)	T1328I	probably damaging	Het
Rngtt	T	G	4: 33,500,292 (GRCm39)		probably null	Het
Runx2	G	A	17: 45,125,079 (GRCm39)	P80L	probably damaging	Het
Samd1	A	G	8: 84,725,618 (GRCm39)		probably benign	Het
Scamp5	A	T	9: 57,358,735 (GRCm39)	F14I	probably damaging	Het
Shank3	C	T	15: 89,388,547 (GRCm39)	R380C	probably damaging	Het
Shisal2a	T	C	4: 108,234,658 (GRCm39)	T70A	probably benign	Het
Slc1a4	C	A	11: 20,282,166 (GRCm39)	A103S	probably damaging	Het
Slc39a14	A	G	14: 70,547,371 (GRCm39)	V325A	probably benign	Het
Slc5a9	C	A	4: 111,748,941 (GRCm39)		probably null	Het
Spata6l	G	A	19: 28,874,903 (GRCm39)		probably benign	Het
Spta1	T	A	1: 174,013,213 (GRCm39)	S375T	probably damaging	Het
Sval1	A	G	6: 41,932,378 (GRCm39)	N76S	probably benign	Het
Synpo	C	T	18: 60,762,936 (GRCm39)		probably benign	Het
Sytl5	C	T	X: 9,781,841 (GRCm39)	P181L	possibly damaging	Het
Tacc1	A	G	8: 25,672,622 (GRCm39)	M111T	possibly damaging	Het
Tec	T	C	5: 72,913,694 (GRCm39)	D613G	probably benign	Het
Tecpr2	C	T	12: 110,897,921 (GRCm39)	T391I	possibly damaging	Het
Thop1	G	A	10: 80,909,125 (GRCm39)	G52D	probably damaging	Het
Tmco5	T	A	2: 116,722,689 (GRCm39)	V270D	possibly damaging	Het
Ttn	C	T	2: 76,556,973 (GRCm39)	E28265K	possibly damaging	Het
Tuft1	T	C	3: 94,542,750 (GRCm39)	D72G	probably damaging	Het
Tyrp1	C	T	4: 80,769,144 (GRCm39)		probably benign	Het
Usp9y	T	C	Y: 1,308,041 (GRCm39)	D2265G	probably damaging	Het
Vmn2r104	G	A	17: 20,250,288 (GRCm39)	A661V	probably benign	Het
Vwa5a	A	T	9: 38,649,268 (GRCm39)	N672I	probably benign	Het
Wdr95	A	T	5: 149,535,157 (GRCm39)	K772*	probably null	Het
Ybx1	T	C	4: 119,140,010 (GRCm39)	T106A	probably benign	Het
Ypel3	T	C	7: 126,376,961 (GRCm39)	S14P	probably benign	Het
Zfp518a	T	A	19: 40,903,972 (GRCm39)	S1300R	probably benign	Het
Zscan5b	A	T	7: 6,242,189 (GRCm39)	*469Y	probably null	Het

Other mutations in Pigk

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00323:Pigk	APN	3	152,453,269 (GRCm39)	nonsense	probably null
IGL00668:Pigk	APN	3	152,448,173 (GRCm39)	missense	possibly damaging	0.50
IGL01335:Pigk	APN	3	152,448,173 (GRCm39)	missense	probably benign	0.30
IGL01657:Pigk	APN	3	152,428,157 (GRCm39)	missense	probably damaging	1.00
IGL01813:Pigk	APN	3	152,448,156 (GRCm39)	missense	probably damaging	1.00
IGL02426:Pigk	APN	3	152,448,120 (GRCm39)	splice site	probably null
IGL02871:Pigk	APN	3	152,472,153 (GRCm39)	missense	probably damaging	1.00
IGL02963:Pigk	APN	3	152,472,098 (GRCm39)	nonsense	probably null
R0135:Pigk	UTSW	3	152,450,343 (GRCm39)	splice site	probably benign
R1750:Pigk	UTSW	3	152,450,101 (GRCm39)	missense	probably damaging	1.00
R1766:Pigk	UTSW	3	152,445,793 (GRCm39)	missense	probably damaging	1.00
R1990:Pigk	UTSW	3	152,450,131 (GRCm39)	missense	probably damaging	1.00
R1991:Pigk	UTSW	3	152,450,131 (GRCm39)	missense	probably damaging	1.00
R2010:Pigk	UTSW	3	152,472,151 (GRCm39)	missense	probably damaging	1.00
R2864:Pigk	UTSW	3	152,428,189 (GRCm39)	missense	probably damaging	1.00
R3883:Pigk	UTSW	3	152,419,832 (GRCm39)	missense	probably benign	0.00
R4153:Pigk	UTSW	3	152,445,766 (GRCm39)	missense	probably damaging	1.00
R4730:Pigk	UTSW	3	152,448,203 (GRCm39)	nonsense	probably null
R4942:Pigk	UTSW	3	152,450,154 (GRCm39)	missense	probably damaging	1.00
R5323:Pigk	UTSW	3	152,443,837 (GRCm39)	missense	probably damaging	1.00
R5655:Pigk	UTSW	3	152,445,858 (GRCm39)	missense	probably damaging	1.00
R5941:Pigk	UTSW	3	152,472,150 (GRCm39)	missense	possibly damaging	0.94
R5986:Pigk	UTSW	3	152,446,486 (GRCm39)	missense	probably benign	0.00
R6391:Pigk	UTSW	3	152,446,486 (GRCm39)	missense	probably benign
R7182:Pigk	UTSW	3	152,428,188 (GRCm39)	missense	possibly damaging	0.95
R7349:Pigk	UTSW	3	152,453,238 (GRCm39)	missense	probably benign	0.04
R7947:Pigk	UTSW	3	152,453,404 (GRCm39)	missense	probably benign	0.00
R7971:Pigk	UTSW	3	152,450,176 (GRCm39)	missense	probably benign	0.26
R8915:Pigk	UTSW	3	152,472,098 (GRCm39)	missense	probably benign	0.00
R8932:Pigk	UTSW	3	152,445,871 (GRCm39)	missense	possibly damaging	0.64
Z1177:Pigk	UTSW	3	152,472,109 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CTCGGAAGTGTATGCTTAGCTTTAG -3'
(R):5'- AAGGATCCTCAACCTATGTCCC -3'

Sequencing Primer
(F):5'- CGCTGAGTAATATATAGCTAGG -3'
(R):5'- GTCATTTCAGGTATACACACACTCG -3'

Posted On

2016-04-15