Mutagenetix > Incidental Mutations

Incidental Mutation 'R4936:Rtkn2'

380393

Institutional Source

Beutler Lab

Gene Symbol

Rtkn2

Ensembl Gene

ENSMUSG00000037846

Gene Name

rhotekin 2

Synonyms

Plekhk1, B130039D23Rik, RTKN2, Mbf

MMRRC Submission

042536-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.150) question?

Stock #

R4936 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

67979570-68059740 bp(+) (GRCm38)

Type of Mutation

makesense

DNA Base Change (assembly)

T to C at 68041915 bp

Zygosity

Heterozygous

Amino Acid Change

Stop codon to Glutamine at position 602 (*602Q)

Ref Sequence

ENSEMBL: ENSMUSP00000116166 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000068994] [ENSMUST00000105437] [ENSMUST00000117086] [ENSMUST00000118160] [ENSMUST00000147556]

Predicted Effect

probably null
Transcript: ENSMUST00000068994
AA Change: *605Q

SMART Domains

Protein: ENSMUSP00000070717
Gene: ENSMUSG00000037846
AA Change: *605Q

Domain	Start	End	E-Value	Type
Blast:Hr1	12	75	4e-30	BLAST
Pfam:Anillin	93	243	4.9e-37	PFAM
PH	282	389	1.11e-6	SMART
low complexity region	529	543	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000105437
AA Change: *603Q

SMART Domains

Protein: ENSMUSP00000101077
Gene: ENSMUSG00000037846
AA Change: *603Q

Domain	Start	End	E-Value	Type
Blast:Hr1	12	75	4e-30	BLAST
Pfam:Anillin	90	241	3.1e-37	PFAM
PH	280	387	1.11e-6	SMART
low complexity region	527	541	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000117086
AA Change: *602Q

SMART Domains

Protein: ENSMUSP00000112419
Gene: ENSMUSG00000037846
AA Change: *602Q

Domain	Start	End	E-Value	Type
Blast:Hr1	12	75	4e-30	BLAST
Pfam:Anillin	90	240	4.9e-37	PFAM
PH	279	386	1.11e-6	SMART
low complexity region	526	540	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000118160
AA Change: *605Q

SMART Domains

Protein: ENSMUSP00000112946
Gene: ENSMUSG00000037846
AA Change: *605Q

Domain	Start	End	E-Value	Type
Blast:Hr1	12	75	4e-30	BLAST
Pfam:Anillin	94	242	1.4e-49	PFAM
PH	282	389	1.11e-6	SMART
low complexity region	529	543	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123147

Predicted Effect

probably null
Transcript: ENSMUST00000147556
AA Change: *602Q

SMART Domains

Protein: ENSMUSP00000116166
Gene: ENSMUSG00000037846
AA Change: *602Q

Domain	Start	End	E-Value	Type
Blast:Hr1	12	75	4e-30	BLAST
Pfam:Anillin	90	240	4.9e-37	PFAM
PH	279	386	1.11e-6	SMART
low complexity region	526	540	N/A	INTRINSIC

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.0%
20x: 87.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2300002M23Rik	T	A	17: 35,568,315	F183L	possibly damaging	Het
4930590J08Rik	T	A	6: 91,944,264	M775K	probably damaging	Het
Actn1	T	G	12: 80,172,998	I700L	probably benign	Het
Adam5	T	C	8: 24,786,271	Y460C	probably damaging	Het
Akna	C	T	4: 63,395,265	G207E	probably damaging	Het
Ank2	T	A	3: 126,955,039	H527L	possibly damaging	Het
Anks1	C	A	17: 27,988,805	N383K	probably damaging	Het
Apba3	C	T	10: 81,269,370		probably null	Het
Atp9b	C	A	18: 80,736,093	V1121F	possibly damaging	Het
Bsn	T	C	9: 108,111,761	Y2264C	probably damaging	Het
Bst1	A	G	5: 43,840,457	D266G	probably damaging	Het
Cep55	A	G	19: 38,071,754		probably null	Het
Ces4a	G	A	8: 105,138,097	G69S	probably damaging	Het
Ckb	T	C	12: 111,671,230	K156E	probably benign	Het
Cln3	T	A	7: 126,575,221	H315L	probably damaging	Het
Cnot6l	A	G	5: 96,079,937	F479S	probably damaging	Het
Col1a1	A	G	11: 94,947,132	D826G	unknown	Het
Cyp27a1	T	C	1: 74,735,405	V194A	probably benign	Het
Dis3l2	C	T	1: 87,044,168	P643S	probably benign	Het
Dpf3	T	C	12: 83,331,966	D108G	probably damaging	Het
Eif2b4	C	T	5: 31,192,897	G27D	probably benign	Het
Eif4a1	T	G	11: 69,672,425		probably benign	Het
Espl1	A	T	15: 102,304,937	D566V	probably damaging	Het
Ext2	T	A	2: 93,813,679	R86*	probably null	Het
Fasn	A	T	11: 120,816,085	F914I	probably damaging	Het
Fbf1	A	G	11: 116,152,552	L477P	probably benign	Het
Fsd1	A	T	17: 55,996,452	K441N	possibly damaging	Het
Fsip2	T	A	2: 82,985,040	S3706T	probably benign	Het
Gabra5	A	T	7: 57,408,799	N400K	probably benign	Het
Gimap8	G	T	6: 48,656,134	G296W	probably damaging	Het
Gli2	A	G	1: 118,836,140	V1427A	probably benign	Het
Gm7334	A	T	17: 50,698,827	Y47F	probably damaging	Het
Gm8674	T	G	13: 49,900,755		noncoding transcript	Het
Gmeb2	G	T	2: 181,254,246	T377K	probably benign	Het
Gp9	T	A	6: 87,779,247	D81E	probably benign	Het
Il5ra	T	A	6: 106,738,162	I212F	possibly damaging	Het
Klhl18	G	T	9: 110,428,961	N470K	possibly damaging	Het
Lfng	G	T	5: 140,612,395		probably null	Het
Lpo	A	G	11: 87,810,340	I430T	probably benign	Het
Lrrc31	C	T	3: 30,689,268	D183N	probably damaging	Het
Meis2	T	C	2: 115,864,412	T410A	probably benign	Het
Myo6	A	G	9: 80,307,681	D1232G	probably damaging	Het
Ncapd2	C	T	6: 125,169,840	R1261H	probably benign	Het
Nfkb1	C	T	3: 135,613,982	V251M	probably damaging	Het
Nmbr	C	A	10: 14,766,986	H96Q	probably damaging	Het
Nop14	C	T	5: 34,652,393	R256H	probably damaging	Het
Nqo2	T	A	13: 33,981,518	Y133N	probably damaging	Het
Olfr1153	A	G	2: 87,896,813	I213V	probably benign	Het
Olfr1366	T	C	13: 21,537,187	I273V	probably benign	Het
Pbld2	C	A	10: 63,052,238	S168R	probably damaging	Het
Pcdhb7	G	T	18: 37,342,149	G113*	probably null	Het
Pcdhb7	G	T	18: 37,342,150	G113V	probably damaging	Het
Pdgfra	A	T	5: 75,195,026	T1066S	probably damaging	Het
Prdm8	A	T	5: 98,185,022		probably null	Het
Prdm8	G	T	5: 98,185,023		probably null	Het
Prkg1	T	C	19: 30,586,375	Y479C	probably benign	Het
Pudp	T	C	18: 50,568,468	T65A	probably benign	Het
Rbbp6	C	T	7: 122,999,703		probably benign	Het
Rcc1	C	G	4: 132,335,735	V187L	probably damaging	Het
Rims2	T	A	15: 39,437,728	M285K	probably damaging	Het
Rxfp3	T	G	15: 11,036,780	S169R	probably damaging	Het
Sardh	T	C	2: 27,228,241		probably null	Het
Slc24a2	A	T	4: 87,227,347	F157I	probably damaging	Het
Slc25a20	T	C	9: 108,681,992	Y186H	probably damaging	Het
Slc25a24	A	G	3: 109,163,548	R408G	probably damaging	Het
Slc44a5	T	G	3: 154,253,716	I348S	probably damaging	Het
Slc8a2	A	T	7: 16,134,175	K111*	probably null	Het
Smc5	A	G	19: 23,234,003	V589A	probably damaging	Het
Thbd	A	T	2: 148,407,735	I71N	probably damaging	Het
Thsd7b	T	C	1: 129,678,145	M541T	probably benign	Het
Tie1	T	A	4: 118,484,771		silent	Het
Tln1	A	G	4: 43,547,522	F813S	possibly damaging	Het
Tnrc18	A	T	5: 142,765,977	L1191*	probably null	Het
Tubb2a	A	C	13: 34,075,257	Y183*	probably null	Het
Ubr4	T	A	4: 139,396,566	V343E	probably damaging	Het
Vmn2r93	A	T	17: 18,304,065	D107V	possibly damaging	Het
Vwa5a	T	G	9: 38,736,198	S624R	probably benign	Het
Wwox	G	A	8: 114,706,358	V255I	probably benign	Het
Wwp1	T	C	4: 19,638,804	K546E	probably damaging	Het
Xirp2	T	A	2: 67,509,819	F801L	possibly damaging	Het
Zfp407	T	C	18: 84,559,464	I1175V	probably benign	Het
Zfp646	T	A	7: 127,881,761	C1037S	possibly damaging	Het
Zfp786	A	T	6: 47,821,268	C245*	probably null	Het
Zfp827	T	C	8: 79,061,183	V326A	probably benign	Het

Other mutations in Rtkn2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01069:Rtkn2	APN	10	68041664	missense	probably benign	0.00
IGL01338:Rtkn2	APN	10	68025519	missense	possibly damaging	0.83
IGL01865:Rtkn2	APN	10	68035875	missense	probably benign	0.44
IGL03074:Rtkn2	APN	10	68041721	missense	probably damaging	0.99
IGL03383:Rtkn2	APN	10	68017837	missense	probably damaging	1.00
PIT4520001:Rtkn2	UTSW	10	67987461	missense	probably damaging	1.00
R1167:Rtkn2	UTSW	10	67997620	missense	probably damaging	1.00
R2166:Rtkn2	UTSW	10	68041696	missense	possibly damaging	0.55
R2323:Rtkn2	UTSW	10	68001934	missense	probably damaging	1.00
R3826:Rtkn2	UTSW	10	67997626	splice site	probably null
R3827:Rtkn2	UTSW	10	67997626	splice site	probably null
R3828:Rtkn2	UTSW	10	67997626	splice site	probably null
R3829:Rtkn2	UTSW	10	67997626	splice site	probably null
R4742:Rtkn2	UTSW	10	68003314	missense	possibly damaging	0.72
R4867:Rtkn2	UTSW	10	68001927	missense	probably damaging	0.99
R4871:Rtkn2	UTSW	10	68005633	missense	probably damaging	1.00
R5009:Rtkn2	UTSW	10	68041409	missense	probably benign	0.14
R5709:Rtkn2	UTSW	10	68001970	missense	probably benign	0.31
R6295:Rtkn2	UTSW	10	67979699	start gained	probably benign
R6307:Rtkn2	UTSW	10	68035832	missense	possibly damaging	0.60
R6751:Rtkn2	UTSW	10	68041453	missense	probably benign	0.43
R6823:Rtkn2	UTSW	10	68026632	missense	probably damaging	0.96
R7011:Rtkn2	UTSW	10	67979665	unclassified	probably benign
R7369:Rtkn2	UTSW	10	68041429	missense	probably damaging	0.96
R7403:Rtkn2	UTSW	10	68005636	missense	probably benign	0.18
R7760:Rtkn2	UTSW	10	68005609	missense	probably damaging	1.00
R7803:Rtkn2	UTSW	10	67979813	critical splice donor site	probably null
Z1177:Rtkn2	UTSW	10	68025603	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCATCATCTCCAGAAACCTGTG -3'
(R):5'- GTCTAGAAACTGCCTCTTTTGC -3'

Sequencing Primer
(F):5'- TCTCCAGAAACCTGTGGCAGC -3'
(R):5'- GGAGGATCATTTCTATTCTGGAAAG -3'

Posted On

2016-04-15