Mutagenetix > Incidental Mutation

Incidental Mutation 'R4937:Sema3c'

380456

Institutional Source

Beutler Lab

Gene Symbol

Sema3c

Ensembl Gene

ENSMUSG00000028780

Gene Name

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C

Synonyms

Semae, 1110036B02Rik

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4937 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

17779814-17935266 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 17899684 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 392 (D392G)

Ref Sequence

ENSEMBL: ENSMUSP00000030568 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030568]

AlphaFold

Q62181

Predicted Effect

probably benign
Transcript: ENSMUST00000030568
AA Change: D392G

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000030568
Gene: ENSMUSG00000028780
AA Change: D392G

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Sema	54	495	1.16e-200	SMART
PSI	513	565	2.87e-13	SMART
IG	577	662	7.08e-4	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000115271

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.1%
20x: 88.3%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for an ENU mutation exhibit perinatal lethality, hypopigmentation and abnormal heart development. Mice homozygous for a knock-out allele exhibit prenatal lethality associated with heart defects. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 102 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930522L14Rik	A	G	5: 109,884,067 (GRCm39)	F597S	probably benign	Het
Aasdh	C	A	5: 77,036,501 (GRCm39)	E347*	probably null	Het
Abca16	G	T	7: 120,126,309 (GRCm39)	C1155F	probably damaging	Het
Adam26a	T	C	8: 44,021,918 (GRCm39)	D524G	probably damaging	Het
Adamts20	G	C	15: 94,277,656 (GRCm39)	H269D	probably benign	Het
Akap9	T	A	5: 4,100,145 (GRCm39)		probably null	Het
Akt3	T	C	1: 176,877,693 (GRCm39)	I358M	possibly damaging	Het
Aldh9a1	G	T	1: 167,189,376 (GRCm39)	A375S	probably damaging	Het
Alg2	A	G	4: 47,473,974 (GRCm39)	S105P	probably benign	Het
Amph	A	G	13: 19,288,515 (GRCm39)	T335A	probably damaging	Het
Ank2	C	T	3: 126,756,050 (GRCm39)	V1056M	probably damaging	Het
Apoh	A	G	11: 108,298,204 (GRCm39)	D168G	probably benign	Het
Arfgef3	C	T	10: 18,465,454 (GRCm39)	A2130T	probably damaging	Het
Arhgap30	A	G	1: 171,230,897 (GRCm39)	D218G	probably benign	Het
Ascc3	C	T	10: 50,699,894 (GRCm39)	P1906S	probably damaging	Het
Atp11b	T	G	3: 35,861,157 (GRCm39)		probably null	Het
B4galnt2	A	G	11: 95,759,255 (GRCm39)	V343A	probably damaging	Het
Barhl1	T	C	2: 28,799,785 (GRCm39)	Y280C	probably damaging	Het
Bcar1	A	T	8: 112,447,669 (GRCm39)	Y103N	probably damaging	Het
Bid	A	G	6: 120,872,707 (GRCm39)	I150T	probably benign	Het
Ccdc171	T	C	4: 83,467,876 (GRCm39)	S74P	probably damaging	Het
Ccni	A	T	5: 93,336,113 (GRCm39)		probably null	Het
Cct8l1	A	G	5: 25,721,891 (GRCm39)	E202G	probably benign	Het
Cd200r3	A	G	16: 44,774,622 (GRCm39)	K212E	probably benign	Het
Cdh19	A	G	1: 110,817,694 (GRCm39)	S683P	probably damaging	Het
Ces2b	A	T	8: 105,559,413 (GRCm39)	H93L	probably benign	Het
Cimip2b	T	A	4: 43,427,514 (GRCm39)	Q270L	possibly damaging	Het
Clec4a1	G	A	6: 122,907,654 (GRCm39)	C114Y	probably damaging	Het
Dcc	G	T	18: 71,675,320 (GRCm39)	S636*	probably null	Het
Dcdc2c	T	C	12: 28,580,472 (GRCm39)	D187G	possibly damaging	Het
Dgkb	G	T	12: 38,164,657 (GRCm39)	E150*	probably null	Het
Dhx30	A	G	9: 109,915,029 (GRCm39)	L884P	probably damaging	Het
Dmwd	T	G	7: 18,815,228 (GRCm39)		probably null	Het
Dnah17	T	A	11: 117,932,980 (GRCm39)	N3593Y	probably damaging	Het
Dnm2	G	A	9: 21,392,633 (GRCm39)	S447N	probably benign	Het
Elk4	G	A	1: 131,945,419 (GRCm39)	G99D	probably damaging	Het
Entpd1	A	T	19: 40,727,965 (GRCm39)		probably benign	Het
Fam114a1	T	A	5: 65,137,070 (GRCm39)	D4E	probably damaging	Het
Fbln2	A	G	6: 91,241,681 (GRCm39)	D754G	probably damaging	Het
Fhip2a	T	C	19: 57,367,069 (GRCm39)	V204A	probably benign	Het
Foxred2	T	C	15: 77,840,035 (GRCm39)	N85S	probably damaging	Het
Fut9	A	G	4: 25,799,591 (GRCm39)		probably benign	Het
Gm1818	G	A	12: 48,606,607 (GRCm39)		noncoding transcript	Het
Gm4894	C	A	9: 49,190,000 (GRCm39)	Q92K	unknown	Het
Gpx2	T	C	12: 76,839,574 (GRCm39)	I141M	probably benign	Het
Gusb	T	C	5: 130,024,326 (GRCm39)	T476A	probably damaging	Het
Hmmr	G	A	11: 40,612,667 (GRCm39)	T180I	possibly damaging	Het
Itgbl1	T	C	14: 124,210,780 (GRCm39)	Y493H	probably benign	Het
Klhdc9	G	T	1: 171,187,951 (GRCm39)	C93*	probably null	Het
Ldaf1	T	C	7: 119,715,535 (GRCm39)	S120P	probably damaging	Het
Lpar3	A	G	3: 145,990,506 (GRCm39)	K275E	probably damaging	Het
Lrp1b	A	G	2: 40,692,897 (GRCm39)		probably null	Het
Lrrc63	C	T	14: 75,322,389 (GRCm39)	G572S	probably damaging	Het
Mapk11	A	T	15: 89,030,685 (GRCm39)	D98E	probably benign	Het
Mgat4f	T	A	1: 134,317,714 (GRCm39)	M162K	probably benign	Het
Net1	G	A	13: 3,934,905 (GRCm39)	R374W	probably damaging	Het
Nlrp4g	T	A	9: 124,354,005 (GRCm38)		noncoding transcript	Het
Nrap	T	A	19: 56,335,652 (GRCm39)	Y923F	probably damaging	Het
Or13a20	T	A	7: 140,232,534 (GRCm39)	M214K	probably benign	Het
Or4c108	T	A	2: 88,803,834 (GRCm39)	I134F	probably damaging	Het
Or6c215	A	T	10: 129,637,932 (GRCm39)	V154E	probably benign	Het
Plxnc1	A	G	10: 94,677,335 (GRCm39)	V964A	probably damaging	Het
Pmfbp1	A	G	8: 110,262,498 (GRCm39)	I731V	probably benign	Het
Polq	T	A	16: 36,848,274 (GRCm39)	S294T	probably benign	Het
Pomgnt2	T	C	9: 121,811,620 (GRCm39)	D387G	probably benign	Het
Pramel25	T	C	4: 143,520,407 (GRCm39)	V53A	possibly damaging	Het
Prmt2	G	A	10: 76,056,842 (GRCm39)	T227I	probably damaging	Het
Psmd1	T	A	1: 86,010,947 (GRCm39)	F341I	probably damaging	Het
Ptpn23	T	C	9: 110,221,806 (GRCm39)	M127V	probably benign	Het
Ptprc	A	G	1: 138,017,238 (GRCm39)	F483L	probably damaging	Het
Rab35	A	C	5: 115,778,147 (GRCm39)	I38L	probably damaging	Het
Rapgef6	A	G	11: 54,548,143 (GRCm39)	T486A	probably damaging	Het
Rgl3	A	T	9: 21,899,004 (GRCm39)	C68*	probably null	Het
Rilpl1	T	C	5: 124,653,594 (GRCm39)	E189G	possibly damaging	Het
Rnf217	T	C	10: 31,393,520 (GRCm39)	I354V	probably benign	Het
Rspo3	T	C	10: 29,382,524 (GRCm39)	D50G	probably damaging	Het
Sbno1	A	G	5: 124,512,672 (GRCm39)	S1366P	possibly damaging	Het
Serpinb9e	A	T	13: 33,436,935 (GRCm39)	Y85F	probably benign	Het
Shprh	C	T	10: 11,032,863 (GRCm39)	T283I	probably benign	Het
Sipa1l1	T	C	12: 82,388,103 (GRCm39)	S110P	probably benign	Het
Slc16a12	T	A	19: 34,652,643 (GRCm39)	I168F	probably damaging	Het
Slc23a3	A	G	1: 75,109,268 (GRCm39)	S221P	probably damaging	Het
Slc35b3	A	T	13: 39,116,887 (GRCm39)	I366K	possibly damaging	Het
Slc44a5	T	C	3: 153,949,252 (GRCm39)		probably null	Het
Slc5a12	A	T	2: 110,450,753 (GRCm39)	D316V	probably damaging	Het
Ssr3	A	G	3: 65,299,874 (GRCm39)	S29P	probably damaging	Het
Taf2	G	A	15: 54,890,619 (GRCm39)	Q1055*	probably null	Het
Them6	A	T	15: 74,593,367 (GRCm39)	D75V	probably damaging	Het
Tom1l2	A	G	11: 60,149,744 (GRCm39)	S239P	probably damaging	Het
Tspear	A	G	10: 77,710,877 (GRCm39)	T500A	probably damaging	Het
Tubgcp6	G	A	15: 88,985,752 (GRCm39)	A1487V	probably damaging	Het
Uba7	G	A	9: 107,856,190 (GRCm39)	V522I	possibly damaging	Het
Virma	C	A	4: 11,521,147 (GRCm39)	C901*	probably null	Het
Vmn1r172	A	T	7: 23,359,312 (GRCm39)	I66F	possibly damaging	Het
Vmn2r82	A	T	10: 79,215,010 (GRCm39)	Y331F	probably benign	Het
Wdr55	G	A	18: 36,895,451 (GRCm39)	V143I	probably benign	Het
Zbtb49	A	T	5: 38,371,307 (GRCm39)	D191E	possibly damaging	Het
Zfhx4	A	G	3: 5,307,071 (GRCm39)	H99R	probably damaging	Het
Zfp1005	C	T	2: 150,110,680 (GRCm39)	H457Y	unknown	Het
Zfp560	C	T	9: 20,259,263 (GRCm39)	C533Y	probably damaging	Het
Zfp646	C	T	7: 127,478,354 (GRCm39)	A177V	probably benign	Het
Zfp653	C	T	9: 21,967,074 (GRCm39)	E604K	probably damaging	Het

Other mutations in Sema3c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00559:Sema3c	APN	5	17,899,858 (GRCm39)	missense	probably damaging	1.00
IGL01528:Sema3c	APN	5	17,919,413 (GRCm39)	missense	probably benign
IGL01618:Sema3c	APN	5	17,877,504 (GRCm39)	missense	probably damaging	1.00
IGL01730:Sema3c	APN	5	17,916,434 (GRCm39)	missense	probably benign	0.01
IGL01762:Sema3c	APN	5	17,899,849 (GRCm39)	missense	possibly damaging	0.81
IGL02049:Sema3c	APN	5	17,926,923 (GRCm39)	splice site	probably benign
IGL02249:Sema3c	APN	5	17,867,961 (GRCm39)	missense	probably damaging	1.00
IGL02657:Sema3c	APN	5	17,867,972 (GRCm39)	missense	probably damaging	1.00
IGL02657:Sema3c	APN	5	17,781,866 (GRCm39)	start codon destroyed	possibly damaging	0.71
IGL03213:Sema3c	APN	5	17,899,637 (GRCm39)	splice site	probably benign
PIT4651001:Sema3c	UTSW	5	17,899,731 (GRCm39)	missense	probably benign	0.37
R0031:Sema3c	UTSW	5	17,899,726 (GRCm39)	missense	probably damaging	1.00
R0558:Sema3c	UTSW	5	17,919,413 (GRCm39)	missense	probably benign	0.00
R0964:Sema3c	UTSW	5	17,926,907 (GRCm39)	missense	probably damaging	1.00
R1164:Sema3c	UTSW	5	17,883,312 (GRCm39)	missense	probably benign	0.40
R1351:Sema3c	UTSW	5	17,883,334 (GRCm39)	missense	possibly damaging	0.60
R1368:Sema3c	UTSW	5	17,883,330 (GRCm39)	missense	possibly damaging	0.96
R1480:Sema3c	UTSW	5	17,887,029 (GRCm39)	missense	possibly damaging	0.57
R1880:Sema3c	UTSW	5	17,932,464 (GRCm39)	nonsense	probably null
R1916:Sema3c	UTSW	5	17,932,399 (GRCm39)	missense	probably benign	0.06
R3934:Sema3c	UTSW	5	17,886,938 (GRCm39)	missense	probably damaging	0.97
R4284:Sema3c	UTSW	5	17,883,345 (GRCm39)	missense	probably benign	0.01
R4449:Sema3c	UTSW	5	17,781,844 (GRCm39)	start gained	probably benign
R4545:Sema3c	UTSW	5	17,899,770 (GRCm39)	missense	probably benign	0.01
R4546:Sema3c	UTSW	5	17,899,770 (GRCm39)	missense	probably benign	0.01
R4660:Sema3c	UTSW	5	17,877,511 (GRCm39)	missense	probably damaging	1.00
R4890:Sema3c	UTSW	5	17,880,157 (GRCm39)	missense	probably benign	0.00
R5065:Sema3c	UTSW	5	17,932,615 (GRCm39)	missense	possibly damaging	0.89
R5145:Sema3c	UTSW	5	17,932,615 (GRCm39)	missense	possibly damaging	0.89
R5452:Sema3c	UTSW	5	17,922,068 (GRCm39)	critical splice donor site	probably null
R5586:Sema3c	UTSW	5	17,916,422 (GRCm39)	missense	probably damaging	0.99
R5811:Sema3c	UTSW	5	17,880,188 (GRCm39)	splice site	probably null
R5886:Sema3c	UTSW	5	17,886,984 (GRCm39)	missense	possibly damaging	0.90
R6120:Sema3c	UTSW	5	17,932,630 (GRCm39)	missense	probably benign	0.00
R6191:Sema3c	UTSW	5	17,858,804 (GRCm39)	missense	probably damaging	1.00
R6318:Sema3c	UTSW	5	17,877,430 (GRCm39)	missense	probably damaging	0.96
R6416:Sema3c	UTSW	5	17,781,959 (GRCm39)	missense	probably damaging	0.99
R6441:Sema3c	UTSW	5	17,929,130 (GRCm39)	missense	possibly damaging	0.96
R6816:Sema3c	UTSW	5	17,875,463 (GRCm39)	missense	probably benign	0.36
R7146:Sema3c	UTSW	5	17,899,701 (GRCm39)	missense	probably benign	0.22
R7526:Sema3c	UTSW	5	17,932,594 (GRCm39)	missense	possibly damaging	0.46
R7832:Sema3c	UTSW	5	17,899,845 (GRCm39)	missense	probably damaging	0.99
R8034:Sema3c	UTSW	5	17,932,480 (GRCm39)	missense	probably damaging	1.00
R8053:Sema3c	UTSW	5	17,860,020 (GRCm39)	missense	probably benign	0.00
R8076:Sema3c	UTSW	5	17,932,362 (GRCm39)	missense	probably benign	0.00
R8264:Sema3c	UTSW	5	17,881,537 (GRCm39)	intron	probably benign
R8359:Sema3c	UTSW	5	17,858,726 (GRCm39)	missense	possibly damaging	0.56
R8437:Sema3c	UTSW	5	17,867,936 (GRCm39)	missense	probably damaging	0.99
R9174:Sema3c	UTSW	5	17,868,039 (GRCm39)	critical splice donor site	probably null
R9295:Sema3c	UTSW	5	17,932,495 (GRCm39)	missense	probably benign	0.09
R9477:Sema3c	UTSW	5	17,921,981 (GRCm39)	missense
R9599:Sema3c	UTSW	5	17,919,452 (GRCm39)	critical splice donor site	probably null
R9702:Sema3c	UTSW	5	17,858,828 (GRCm39)	missense	probably damaging	1.00
Z1176:Sema3c	UTSW	5	17,932,517 (GRCm39)	missense	probably benign	0.04
Z1177:Sema3c	UTSW	5	17,922,029 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCCTGTGAAAACTTGAGGC -3'
(R):5'- GCTTAAACACCTACCTGTGCC -3'

Sequencing Primer
(F):5'- GAGGCTCAAGACTCTCCTTG -3'
(R):5'- CTGTGCCCAGAAACAGAACGTG -3'

Posted On

2016-04-15