Mutagenetix > Incidental Mutation

Incidental Mutation 'R4945:Rfc3'

381298

Institutional Source

Beutler Lab

Gene Symbol

Rfc3

Ensembl Gene

ENSMUSG00000033970

Gene Name

replication factor C (activator 1) 3

Synonyms

38kDa, 38kDa, 2810416I22Rik, Recc3

MMRRC Submission

042542-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.971) question?

Stock #

R4945 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

151566282-151574673 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 151566450 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 333 (E333G)

Ref Sequence

ENSEMBL: ENSMUSP00000039621 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038131]

AlphaFold

Q8R323

Predicted Effect

probably damaging
Transcript: ENSMUST00000038131
AA Change: E333G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000039621
Gene: ENSMUSG00000033970
AA Change: E333G

Domain	Start	End	E-Value	Type
AAA	34	190	1.5e-6	SMART
Pfam:Rep_fac_C	216	338	7.8e-19	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127366

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132709

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140067

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145106

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156667

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000202147

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The elongation of primed DNA templates by DNA polymerase delta and DNA polymerase epsilon requires the accessory proteins proliferating cell nuclear antigen (PCNA) and replication factor C (RFC). RFC, also named activator 1, is a protein complex consisting of five distinct subunits of 140, 40, 38, 37, and 36 kDa. This gene encodes the 38 kDa subunit. This subunit is essential for the interaction between the 140 kDa subunit and the core complex that consists of the 36, 37, and 40 kDa subunits. Alternatively spliced transcript variants encoding distinct isoforms have been described. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts13	G	A	2: 26,876,622 (GRCm39)	R512H	probably damaging	Het
Adgrl2	T	A	3: 148,528,672 (GRCm39)	M1158L	probably damaging	Het
Adgrl3	C	A	5: 81,659,895 (GRCm39)	H153Q	probably damaging	Het
Aldh1a2	C	A	9: 71,123,198 (GRCm39)	Q24K	probably benign	Het
Atp1b1	A	G	1: 164,265,867 (GRCm39)	V298A	probably damaging	Het
Casp8ap2	T	A	4: 32,631,163 (GRCm39)	N74K	possibly damaging	Het
Cep135	A	G	5: 76,745,275 (GRCm39)	D229G	probably benign	Het
Cerk	C	G	15: 86,040,802 (GRCm39)	D186H	probably benign	Het
Cmtr2	T	C	8: 110,948,065 (GRCm39)	F125S	probably damaging	Het
Col6a1	A	G	10: 76,548,106 (GRCm39)	V650A	unknown	Het
Cuzd1	A	G	7: 130,918,350 (GRCm39)	F196L	probably damaging	Het
Esm1	T	G	13: 113,346,679 (GRCm39)		probably null	Het
Fbn2	T	A	18: 58,183,325 (GRCm39)	I1787F	possibly damaging	Het
Gm1110	T	C	9: 26,831,891 (GRCm39)	M87V	possibly damaging	Het
Gpr179	T	C	11: 97,240,544 (GRCm39)	H293R	probably damaging	Het
Grk2	A	G	19: 4,340,475 (GRCm39)	I302T	probably damaging	Het
Hoxb6	A	G	11: 96,190,085 (GRCm39)	Y28C	possibly damaging	Het
Ift27	A	G	15: 78,048,454 (GRCm39)	V110A	probably damaging	Het
Igfbp7	T	C	5: 77,499,104 (GRCm39)	D267G	probably benign	Het
Ighv1-49	C	A	12: 115,019,028 (GRCm39)	V56L	possibly damaging	Het
Ighv8-8	C	T	12: 115,257,881 (GRCm39)	M53I	probably benign	Het
Kcnj3	T	A	2: 55,327,590 (GRCm39)	N126K	probably damaging	Het
Kif12	C	T	4: 63,086,730 (GRCm39)		probably null	Het
Lrif1	A	C	3: 106,643,069 (GRCm39)	I725L	probably damaging	Het
Lrrk2	T	C	15: 91,689,123 (GRCm39)	V2265A	probably benign	Het
Med25	T	C	7: 44,532,526 (GRCm39)	N438S	possibly damaging	Het
Mex3b	A	T	7: 82,519,382 (GRCm39)	T566S	probably benign	Het
Mkx	T	C	18: 7,000,657 (GRCm39)	N95S	possibly damaging	Het
Morc3	A	T	16: 93,668,082 (GRCm39)	D820V	probably damaging	Het
Mroh4	G	T	15: 74,483,857 (GRCm39)	N562K	probably benign	Het
Ndst3	A	T	3: 123,346,201 (GRCm39)	I276N	probably damaging	Het
Notch2	A	G	3: 98,019,037 (GRCm39)	N733S	probably benign	Het
Or10a5	A	T	7: 106,635,526 (GRCm39)	M55L	probably benign	Het
Or2l13b	C	A	16: 19,349,307 (GRCm39)	R121L	probably benign	Het
Or51k1	G	A	7: 103,661,585 (GRCm39)	T108I	possibly damaging	Het
Or5ak24	T	C	2: 85,260,895 (GRCm39)	T93A	probably benign	Het
Or5m13	T	A	2: 85,748,917 (GRCm39)	I216N	possibly damaging	Het
Or8b38	G	T	9: 37,973,068 (GRCm39)	G151C	probably damaging	Het
Or8b44	A	T	9: 38,410,585 (GRCm39)	I207F	probably damaging	Het
Or8k37	T	C	2: 86,469,833 (GRCm39)	Y73C	probably damaging	Het
Patj	A	T	4: 98,383,301 (GRCm39)	N268Y	probably damaging	Het
Pbrm1	T	A	14: 30,774,173 (GRCm39)	D446E	probably damaging	Het
Pcdhga11	A	G	18: 37,891,085 (GRCm39)	T698A	probably benign	Het
Pde6a	T	C	18: 61,367,790 (GRCm39)	V266A	probably damaging	Het
Phax	G	T	18: 56,709,063 (GRCm39)	R209L	probably damaging	Het
Pld2	T	A	11: 70,446,524 (GRCm39)	M20K	probably damaging	Het
Rabl3	T	C	16: 37,362,220 (GRCm39)	S20P	probably damaging	Het
Rad51	T	A	2: 118,957,629 (GRCm39)	V174E	probably damaging	Het
Rb1cc1	A	G	1: 6,319,851 (GRCm39)	E1090G	probably benign	Het
Rfx6	T	G	10: 51,602,947 (GRCm39)	Y821*	probably null	Het
Riok3	A	G	18: 12,261,972 (GRCm39)	D2G	probably damaging	Het
Rtn1	G	T	12: 72,264,258 (GRCm39)	A183E	probably damaging	Het
Skint8	T	C	4: 111,796,805 (GRCm39)	L303P	probably damaging	Het
Slc36a2	C	A	11: 55,065,520 (GRCm39)	V162L	probably benign	Het
Sorcs3	T	C	19: 48,752,587 (GRCm39)	V794A	possibly damaging	Het
Sspo	A	G	6: 48,444,021 (GRCm39)		probably null	Het
Tbk1	T	C	10: 121,387,174 (GRCm39)	N707S	probably damaging	Het
Tchhl1	A	T	3: 93,378,883 (GRCm39)	H529L	probably benign	Het
Tgfbr2	A	T	9: 115,960,633 (GRCm39)	H106Q	probably benign	Het
Trim8	A	G	19: 46,491,214 (GRCm39)	E111G	probably benign	Het
Tshz2	A	G	2: 169,725,794 (GRCm39)	Y130C	probably damaging	Het
Txndc15	T	A	13: 55,865,978 (GRCm39)	D147E	probably benign	Het
Vmn1r172	T	A	7: 23,359,745 (GRCm39)	L210H	possibly damaging	Het
Vmn1r55	A	G	7: 5,150,105 (GRCm39)	V106A	probably damaging	Het
Vmn2r49	T	A	7: 9,720,214 (GRCm39)	K426*	probably null	Het
Wnk2	C	T	13: 49,210,722 (GRCm39)	R206Q	probably damaging	Het
Zfp1007	A	T	5: 109,824,941 (GRCm39)	C170S	possibly damaging	Het
Zfp473	T	C	7: 44,383,988 (GRCm39)	N115S	probably benign	Het
Zfp536	G	T	7: 37,269,161 (GRCm39)	A85D	probably damaging	Het
Zfp853	C	A	5: 143,274,584 (GRCm39)	Q345H	unknown	Het

Other mutations in Rfc3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01484:Rfc3	APN	5	151,566,401 (GRCm39)	missense	probably benign	0.00
IGL02429:Rfc3	APN	5	151,574,596 (GRCm39)	missense	probably benign	0.01
IGL02588:Rfc3	APN	5	151,566,381 (GRCm39)	missense	possibly damaging	0.69
IGL02878:Rfc3	APN	5	151,566,379 (GRCm39)	makesense	probably null
IGL03109:Rfc3	APN	5	151,566,559 (GRCm39)	missense	probably benign	0.10
R0129:Rfc3	UTSW	5	151,574,616 (GRCm39)	start codon destroyed	probably null	1.00
R0456:Rfc3	UTSW	5	151,570,988 (GRCm39)	missense	possibly damaging	0.61
R2015:Rfc3	UTSW	5	151,571,003 (GRCm39)	critical splice acceptor site	probably null
R2096:Rfc3	UTSW	5	151,568,383 (GRCm39)	missense	probably benign	0.03
R2306:Rfc3	UTSW	5	151,567,243 (GRCm39)	missense	probably damaging	1.00
R4223:Rfc3	UTSW	5	151,574,637 (GRCm39)	start gained	probably benign
R4739:Rfc3	UTSW	5	151,568,241 (GRCm39)	splice site	probably benign
R4906:Rfc3	UTSW	5	151,570,960 (GRCm39)	missense	probably damaging	0.98
R5643:Rfc3	UTSW	5	151,573,444 (GRCm39)	missense	probably benign	0.05
R5644:Rfc3	UTSW	5	151,573,444 (GRCm39)	missense	probably benign	0.05
R6011:Rfc3	UTSW	5	151,567,184 (GRCm39)	missense	probably damaging	1.00
R6181:Rfc3	UTSW	5	151,570,985 (GRCm39)	missense	probably damaging	1.00
R6885:Rfc3	UTSW	5	151,571,749 (GRCm39)	missense	probably benign	0.00
R7509:Rfc3	UTSW	5	151,570,975 (GRCm39)	missense	probably damaging	1.00
R7587:Rfc3	UTSW	5	151,574,616 (GRCm39)	start codon destroyed	probably null	1.00
R8346:Rfc3	UTSW	5	151,569,100 (GRCm39)	missense	probably damaging	1.00
R8414:Rfc3	UTSW	5	151,568,381 (GRCm39)	missense	possibly damaging	0.94
R9140:Rfc3	UTSW	5	151,568,141 (GRCm39)	missense	probably benign	0.17
R9492:Rfc3	UTSW	5	151,566,411 (GRCm39)	missense	probably damaging	0.99
Z1088:Rfc3	UTSW	5	151,568,327 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CCTCAGAGAGGCTTAACTTTTAAAAC -3'
(R):5'- TTTATGGGTGAGAAGAGTATGCAC -3'

Sequencing Primer
(F):5'- AGGCTTAACTTTTAAAACACAAACAC -3'
(R):5'- AGAGTATGCACGTTTGACTTTTTCC -3'

Posted On

2016-04-27