Mutagenetix > Incidental Mutation

Incidental Mutation 'R4953:Loxl4'

381445

Institutional Source

Beutler Lab

Gene Symbol

Loxl4

Ensembl Gene

ENSMUSG00000025185

Gene Name

lysyl oxidase-like 4

Synonyms

4833426I20Rik

MMRRC Submission

042550-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4953 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

42582421-42601252 bp(-) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

G to T at 42599133 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000126686 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026190] [ENSMUST00000164786] [ENSMUST00000166128] [ENSMUST00000171432]

AlphaFold

Q924C6

Predicted Effect

probably benign
Transcript: ENSMUST00000026190

SMART Domains

Protein: ENSMUSP00000026190
Gene: ENSMUSG00000025185

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
SR	33	134	1.57e-49	SMART
SR	160	288	3.96e-14	SMART
SR	312	412	2.6e-41	SMART
SR	422	530	5.41e-30	SMART
Pfam:Lysyl_oxidase	534	737	1.3e-113	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000164786

SMART Domains

Protein: ENSMUSP00000125803
Gene: ENSMUSG00000025185

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
SR	33	134	1.57e-49	SMART
SR	160	288	3.96e-14	SMART
SR	313	413	2.6e-41	SMART
SR	423	531	5.41e-30	SMART
Pfam:Lysyl_oxidase	535	735	1.8e-101	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000166128

SMART Domains

Protein: ENSMUSP00000126552
Gene: ENSMUSG00000025185

Domain	Start	End	E-Value	Type
signal peptide	1	38	N/A	INTRINSIC
SR	46	147	1.57e-49	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000171432

SMART Domains

Protein: ENSMUSP00000126686
Gene: ENSMUSG00000025185

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
SR	33	134	1.57e-49	SMART
SR	160	288	3.96e-14	SMART
SR	312	412	2.6e-41	SMART
SR	422	530	5.41e-30	SMART
Pfam:Lysyl_oxidase	534	737	1.3e-113	PFAM

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.5%
20x: 93.0%

Validation Efficiency

97% (113/116)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the lysyl oxidase gene family. The prototypic member of the family is essential to the biogenesis of connective tissue, encoding an extracellular copper-dependent amine oxidase that catalyses the first step in the formation of crosslinks in collagens and elastin. A highly conserved amino acid sequence at the C-terminus end appears to be sufficient for amine oxidase activity, suggesting that each family member may retain this function. The N-terminus is poorly conserved and may impart additional roles in developmental regulation, senescence, tumor suppression, cell growth control, and chemotaxis to each member of the family. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acad9	T	C	3: 36,128,525 (GRCm39)	Y129H	probably damaging	Het
Adcy4	C	T	14: 56,016,486 (GRCm39)	D322N	probably damaging	Het
Adgre1	G	A	17: 57,748,321 (GRCm39)	G507E	probably damaging	Het
Agpat5	G	A	8: 18,918,971 (GRCm39)	V118I	probably benign	Het
Aif1	T	C	17: 35,390,074 (GRCm39)		probably null	Het
Akr1c6	A	T	13: 4,488,608 (GRCm39)		probably null	Het
Akt2	T	A	7: 27,337,597 (GRCm39)		probably null	Het
Ankrd35	T	A	3: 96,590,989 (GRCm39)	L425Q	possibly damaging	Het
Arhgap40	A	G	2: 158,385,326 (GRCm39)	T520A	possibly damaging	Het
Arhgef28	T	A	13: 98,066,062 (GRCm39)	D1597V	possibly damaging	Het
Aspm	A	G	1: 139,399,472 (GRCm39)	D1079G	probably benign	Het
Atp1a2	A	T	1: 172,119,009 (GRCm39)		probably benign	Het
Cage1	C	A	13: 38,207,406 (GRCm39)	E252D	possibly damaging	Het
Ccdc185	A	G	1: 182,576,582 (GRCm39)	S36P	possibly damaging	Het
Cd300a	T	C	11: 114,784,247 (GRCm39)	V85A	probably damaging	Het
Cd38	A	C	5: 44,064,887 (GRCm39)	D235A	possibly damaging	Het
Cdcp1	T	C	9: 123,009,088 (GRCm39)	K530R	probably benign	Het
Ceacam20	T	A	7: 19,705,651 (GRCm39)	L214Q	probably damaging	Het
Cntn4	G	A	6: 106,502,379 (GRCm39)	A379T	probably benign	Het
Col4a2	A	T	8: 11,479,505 (GRCm39)	E796V	probably benign	Het
Copa	A	G	1: 171,910,453 (GRCm39)		probably benign	Het
Cpa5	A	G	6: 30,631,363 (GRCm39)	T426A	possibly damaging	Het
Csmd1	A	G	8: 16,249,931 (GRCm39)	F1016L	probably damaging	Het
Cyb5r3	A	T	15: 83,042,822 (GRCm39)	L290*	probably null	Het
Ddx42	A	G	11: 106,133,766 (GRCm39)	T581A	probably damaging	Het
Deaf1	C	T	7: 140,902,381 (GRCm39)	G221S	probably damaging	Het
Dnah6	A	G	6: 73,165,366 (GRCm39)	S580P	probably benign	Het
Dock1	A	G	7: 134,754,017 (GRCm39)	E1598G	probably benign	Het
Drg2	T	C	11: 60,350,262 (GRCm39)		probably benign	Het
Eif3f	C	A	7: 108,533,847 (GRCm39)		probably benign	Het
Fam184a	G	T	10: 53,574,901 (GRCm39)	T236K	probably benign	Het
Gas7	C	T	11: 67,550,876 (GRCm39)	T126M	possibly damaging	Het
Gckr	T	G	5: 31,465,608 (GRCm39)	F408C	probably damaging	Het
Gm17472	A	G	6: 42,958,004 (GRCm39)	D91G	probably damaging	Het
Gm5117	G	A	8: 32,228,608 (GRCm39)		noncoding transcript	Het
Gsto1	T	A	19: 47,843,759 (GRCm39)	I47N	probably damaging	Het
Hck	C	T	2: 152,976,597 (GRCm39)	P244S	probably damaging	Het
Hif3a	T	C	7: 16,784,490 (GRCm39)	T250A	probably damaging	Het
Hmcn1	A	T	1: 150,752,111 (GRCm39)		probably benign	Het
Impa1	G	A	3: 10,380,340 (GRCm39)	S247F	probably damaging	Het
Ints14	G	C	9: 64,889,340 (GRCm39)	R397P	probably damaging	Het
Iqgap1	T	C	7: 80,373,524 (GRCm39)		probably null	Het
Krt1c	T	C	15: 101,722,377 (GRCm39)	K436R	probably damaging	Het
Lama3	G	A	18: 12,581,362 (GRCm39)	C607Y	probably damaging	Het
Lrrc8d	C	T	5: 105,961,234 (GRCm39)	T548M	probably damaging	Het
Man1b1	T	A	2: 25,228,196 (GRCm39)	D155E	probably damaging	Het
Mapk8ip2	C	T	15: 89,341,431 (GRCm39)	P214L	probably benign	Het
Mast1	G	A	8: 85,645,357 (GRCm39)	T696I	probably damaging	Het
Muc15	C	T	2: 110,561,617 (GRCm39)	P18S	probably damaging	Het
Mybl2	T	C	2: 162,922,716 (GRCm39)	S205P	probably damaging	Het
Mylk	T	C	16: 34,809,331 (GRCm39)	S1763P	probably damaging	Het
Nek10	T	A	14: 14,860,986 (GRCm38)	L513M	possibly damaging	Het
Nfib	A	G	4: 82,271,808 (GRCm39)	M252T	probably benign	Het
Nid2	C	A	14: 19,828,146 (GRCm39)	Y261*	probably null	Het
Nmd3	C	T	3: 69,638,970 (GRCm39)	R187C	possibly damaging	Het
Nomo1	G	T	7: 45,700,155 (GRCm39)		probably benign	Het
Npy4r	A	G	14: 33,868,437 (GRCm39)	F284L	probably damaging	Het
Nt5dc2	T	C	14: 30,860,878 (GRCm39)	V351A	possibly damaging	Het
Ofcc1	G	A	13: 40,168,864 (GRCm39)	T841I	probably damaging	Het
Or5b121	T	A	19: 13,507,178 (GRCm39)	L91Q	probably null	Het
Or5g27	T	A	2: 85,410,069 (GRCm39)	L162*	probably null	Het
Pcdhb12	T	A	18: 37,569,209 (GRCm39)	D118E	probably damaging	Het
Pdcd11	C	T	19: 47,116,404 (GRCm39)	T1518I	probably benign	Het
Pde6a	T	A	18: 61,364,434 (GRCm39)	C163*	probably null	Het
Pign	A	T	1: 105,572,227 (GRCm39)	W314R	probably benign	Het
Pip5k1b	T	A	19: 24,367,799 (GRCm39)	H76L	probably damaging	Het
Plcz1	T	C	6: 139,974,277 (GRCm39)	N55S	possibly damaging	Het
Pou5f1	A	T	17: 35,821,438 (GRCm39)	H350L	possibly damaging	Het
Rchy1	A	T	5: 92,110,487 (GRCm39)		probably null	Het
Ric8b	A	G	10: 84,793,946 (GRCm39)	T270A	possibly damaging	Het
Rprml	A	G	11: 103,540,644 (GRCm39)	E13G	probably benign	Het
Secisbp2	T	A	13: 51,836,063 (GRCm39)	I719N	probably damaging	Het
Sergef	C	T	7: 46,283,259 (GRCm39)	R148H	probably benign	Het
Serpina6	T	A	12: 103,618,221 (GRCm39)		probably null	Het
Sirpb1b	C	A	3: 15,613,887 (GRCm39)	W65L	probably damaging	Het
Slc32a1	A	T	2: 158,455,977 (GRCm39)	I211F	possibly damaging	Het
Slc5a9	C	A	4: 111,748,941 (GRCm39)		probably null	Het
Smarce1	A	G	11: 99,105,977 (GRCm39)	V226A	probably benign	Het
Spata31d1b	A	T	13: 59,864,097 (GRCm39)	E415V	probably damaging	Het
Speg	G	A	1: 75,400,508 (GRCm39)	R2556H	possibly damaging	Het
Suclg2	A	C	6: 95,543,417 (GRCm39)	V338G	probably damaging	Het
Tarbp1	T	C	8: 127,174,184 (GRCm39)	E874G	possibly damaging	Het
Tex14	G	T	11: 87,427,727 (GRCm39)		probably null	Het
Trim36	T	A	18: 46,329,245 (GRCm39)	D53V	possibly damaging	Het
Tsga10ip	T	A	19: 5,444,368 (GRCm39)	Y21F	possibly damaging	Het
Ttn	C	T	2: 76,620,289 (GRCm39)	V15849M	probably damaging	Het
Ube3b	T	C	5: 114,539,471 (GRCm39)	S421P	probably benign	Het
Unc5a	A	T	13: 55,147,683 (GRCm39)	M498L	probably benign	Het
Vipr2	A	G	12: 116,107,876 (GRCm39)	I420M	probably benign	Het
Vmn1r179	T	A	7: 23,628,515 (GRCm39)	H235Q	probably damaging	Het
Vps35	T	A	8: 86,008,475 (GRCm39)	I267F	probably damaging	Het
Wdr26	G	A	1: 181,025,216 (GRCm39)	R279W	probably damaging	Het
Xpo6	C	A	7: 125,768,443 (GRCm39)	R88L	probably damaging	Het
Zdhhc1	CGGGGG	CGGGGGG	8: 106,210,376 (GRCm39)		probably null	Het
Zfp105	T	A	9: 122,758,880 (GRCm39)	S184T	probably benign	Het
Zfp574	G	A	7: 24,780,388 (GRCm39)	R470H	probably damaging	Het
Zswim9	T	A	7: 13,003,484 (GRCm39)	H122L	probably damaging	Het

Other mutations in Loxl4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01472:Loxl4	APN	19	42,585,988 (GRCm39)	missense	probably damaging	1.00
IGL02063:Loxl4	APN	19	42,596,778 (GRCm39)	missense	probably benign	0.03
IGL02490:Loxl4	APN	19	42,593,269 (GRCm39)	missense	probably benign
IGL02498:Loxl4	APN	19	42,593,412 (GRCm39)	missense	probably benign	0.27
IGL03107:Loxl4	APN	19	42,593,718 (GRCm39)	missense	probably benign	0.12
IGL03296:Loxl4	APN	19	42,587,262 (GRCm39)	splice site	probably benign
R1145:Loxl4	UTSW	19	42,596,994 (GRCm39)	unclassified	probably benign
R1697:Loxl4	UTSW	19	42,593,379 (GRCm39)	missense	possibly damaging	0.86
R2126:Loxl4	UTSW	19	42,592,402 (GRCm39)	missense	probably damaging	1.00
R2128:Loxl4	UTSW	19	42,592,402 (GRCm39)	missense	probably damaging	1.00
R2148:Loxl4	UTSW	19	42,592,631 (GRCm39)	splice site	probably null
R2159:Loxl4	UTSW	19	42,588,446 (GRCm39)	missense	probably damaging	1.00
R3624:Loxl4	UTSW	19	42,596,015 (GRCm39)	missense	probably benign	0.28
R4030:Loxl4	UTSW	19	42,596,798 (GRCm39)	missense	probably damaging	1.00
R4181:Loxl4	UTSW	19	42,596,030 (GRCm39)	missense	probably benign	0.00
R4302:Loxl4	UTSW	19	42,596,030 (GRCm39)	missense	probably benign	0.00
R4700:Loxl4	UTSW	19	42,596,052 (GRCm39)	missense	probably benign	0.07
R4701:Loxl4	UTSW	19	42,596,052 (GRCm39)	missense	probably benign	0.07
R4719:Loxl4	UTSW	19	42,596,030 (GRCm39)	missense	probably benign	0.00
R4724:Loxl4	UTSW	19	42,596,785 (GRCm39)	missense	probably benign	0.23
R4750:Loxl4	UTSW	19	42,593,443 (GRCm39)	missense	probably damaging	1.00
R5579:Loxl4	UTSW	19	42,592,729 (GRCm39)	missense	probably damaging	1.00
R5840:Loxl4	UTSW	19	42,587,154 (GRCm39)	missense	probably damaging	1.00
R5856:Loxl4	UTSW	19	42,583,805 (GRCm39)	missense	possibly damaging	0.89
R5879:Loxl4	UTSW	19	42,596,066 (GRCm39)	missense	probably benign	0.09
R6137:Loxl4	UTSW	19	42,587,232 (GRCm39)	missense	probably damaging	1.00
R6180:Loxl4	UTSW	19	42,596,791 (GRCm39)	missense	probably damaging	1.00
R6324:Loxl4	UTSW	19	42,583,817 (GRCm39)	missense	probably benign	0.00
R6347:Loxl4	UTSW	19	42,596,709 (GRCm39)	missense	probably damaging	1.00
R6646:Loxl4	UTSW	19	42,587,220 (GRCm39)	missense	probably damaging	1.00
R6788:Loxl4	UTSW	19	42,596,792 (GRCm39)	missense	probably damaging	1.00
R7045:Loxl4	UTSW	19	42,595,074 (GRCm39)	missense	probably damaging	1.00
R8013:Loxl4	UTSW	19	42,596,115 (GRCm39)	missense	probably damaging	1.00
R8072:Loxl4	UTSW	19	42,596,021 (GRCm39)	missense	probably damaging	1.00
R8546:Loxl4	UTSW	19	42,596,027 (GRCm39)	missense	probably benign
R9124:Loxl4	UTSW	19	42,596,099 (GRCm39)	missense	probably damaging	1.00
R9202:Loxl4	UTSW	19	42,593,452 (GRCm39)	missense	probably benign	0.00
R9286:Loxl4	UTSW	19	42,586,047 (GRCm39)	missense	possibly damaging	0.74

Predicted Primers

Posted On

2016-04-27