Incidental Mutation 'R4938:Clasrp'
| ID |
382844 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Clasrp
|
| Ensembl Gene |
ENSMUSG00000061028 |
| Gene Name |
CLK4-associating serine/arginine rich protein |
| Synonyms |
SWAP2, Sfrs16, Srsf16 |
| MMRRC Submission |
042537-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R4938 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
19314960-19338411 bp(-) (GRCm39) |
| Type of Mutation |
splice site (6 bp from exon) |
| DNA Base Change (assembly) |
A to G
at 19318703 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000083205
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000086041]
[ENSMUST00000086041]
[ENSMUST00000108453]
[ENSMUST00000207524]
[ENSMUST00000207663]
[ENSMUST00000208068]
[ENSMUST00000207907]
|
| AlphaFold |
Q8CFC7 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000086041
|
| SMART Domains |
Protein: ENSMUSP00000083205
Gene: ENSMUSG00000061028
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
19 |
35 |
N/A |
INTRINSIC |
|
DRY_EERY
|
39 |
171 |
1.28e-64 |
SMART |
|
low complexity region
|
172 |
212 |
N/A |
INTRINSIC |
|
low complexity region
|
241 |
260 |
N/A |
INTRINSIC |
|
low complexity region
|
263 |
283 |
N/A |
INTRINSIC |
|
low complexity region
|
302 |
324 |
N/A |
INTRINSIC |
|
low complexity region
|
339 |
368 |
N/A |
INTRINSIC |
|
low complexity region
|
372 |
446 |
N/A |
INTRINSIC |
|
low complexity region
|
453 |
476 |
N/A |
INTRINSIC |
|
low complexity region
|
480 |
532 |
N/A |
INTRINSIC |
|
coiled coil region
|
574 |
630 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000086041
|
| SMART Domains |
Protein: ENSMUSP00000083205
Gene: ENSMUSG00000061028
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
19 |
35 |
N/A |
INTRINSIC |
|
DRY_EERY
|
39 |
171 |
1.28e-64 |
SMART |
|
low complexity region
|
172 |
212 |
N/A |
INTRINSIC |
|
low complexity region
|
241 |
260 |
N/A |
INTRINSIC |
|
low complexity region
|
263 |
283 |
N/A |
INTRINSIC |
|
low complexity region
|
302 |
324 |
N/A |
INTRINSIC |
|
low complexity region
|
339 |
368 |
N/A |
INTRINSIC |
|
low complexity region
|
372 |
446 |
N/A |
INTRINSIC |
|
low complexity region
|
453 |
476 |
N/A |
INTRINSIC |
|
low complexity region
|
480 |
532 |
N/A |
INTRINSIC |
|
coiled coil region
|
574 |
630 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000108453
|
| SMART Domains |
Protein: ENSMUSP00000104093
Gene: ENSMUSG00000011267
| Domain | Start | End | E-Value | Type |
|---|
|
ZnF_C2H2
|
138 |
161 |
5.07e0 |
SMART |
|
ZnF_C2H2
|
212 |
234 |
2.05e-2 |
SMART |
|
ZnF_C2H2
|
240 |
262 |
1.1e-2 |
SMART |
|
low complexity region
|
281 |
295 |
N/A |
INTRINSIC |
|
low complexity region
|
317 |
329 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
360 |
382 |
1.95e-3 |
SMART |
|
ZnF_C2H2
|
388 |
410 |
3.39e-3 |
SMART |
|
ZnF_C2H2
|
418 |
441 |
1.14e0 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000207253
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000207264
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000207447
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000207524
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000207663
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000208068
|
| Predicted Effect |
silent
Transcript: ENSMUST00000207907
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000208464
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000209059
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000208716
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000208427
|
| Meta Mutation Damage Score |
0.9588 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 97.0%
- 20x: 94.6%
|
| Validation Efficiency |
99% (74/75) |
| MGI Phenotype |
FUNCTION: The protein encoded by this gene contains serine/arginine (SR) dipeptide repeat domains, and is thought to be involved in the regulation of alternative splicing. This protein is thought to interact with, and be phosphorylated by, Clk4. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2014]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 67 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Arl14ep |
G |
T |
2: 106,799,663 (GRCm39) |
H59Q |
probably damaging |
Het |
| Atp6v0a4 |
T |
A |
6: 38,055,749 (GRCm39) |
I321F |
possibly damaging |
Het |
| Cdr2l |
A |
G |
11: 115,284,651 (GRCm39) |
D329G |
possibly damaging |
Het |
| Cep55 |
A |
G |
19: 38,058,364 (GRCm39) |
E319G |
probably damaging |
Het |
| Cfhr2 |
C |
T |
1: 139,741,265 (GRCm39) |
V237I |
probably benign |
Het |
| Col12a1 |
C |
A |
9: 79,607,632 (GRCm39) |
E399* |
probably null |
Het |
| Cyp19a1 |
T |
A |
9: 54,080,647 (GRCm39) |
I237F |
probably benign |
Het |
| Dnajc6 |
T |
G |
4: 101,494,010 (GRCm39) |
N847K |
probably damaging |
Het |
| E330013P04Rik |
C |
G |
19: 60,150,453 (GRCm39) |
|
noncoding transcript |
Het |
| Entpd2 |
A |
G |
2: 25,289,429 (GRCm39) |
T304A |
probably benign |
Het |
| Etl4 |
A |
G |
2: 20,803,460 (GRCm39) |
T779A |
probably benign |
Het |
| Fam107b |
A |
T |
2: 3,773,907 (GRCm39) |
I35L |
probably benign |
Het |
| Fgg |
A |
T |
3: 82,920,175 (GRCm39) |
Y318F |
probably benign |
Het |
| Fitm1 |
A |
C |
14: 55,814,076 (GRCm39) |
T191P |
probably damaging |
Het |
| Fras1 |
A |
G |
5: 96,924,583 (GRCm39) |
M3675V |
probably damaging |
Het |
| Fry |
C |
T |
5: 150,401,454 (GRCm39) |
R731W |
probably damaging |
Het |
| Galnt17 |
A |
T |
5: 131,335,237 (GRCm39) |
S68T |
probably benign |
Het |
| Glp2r |
G |
T |
11: 67,648,419 (GRCm39) |
Y94* |
probably null |
Het |
| Grm1 |
C |
T |
10: 10,812,257 (GRCm39) |
A256T |
probably damaging |
Het |
| Hoxd13 |
A |
G |
2: 74,499,027 (GRCm39) |
Y125C |
probably benign |
Het |
| Hspa14 |
A |
T |
2: 3,492,646 (GRCm39) |
I373K |
probably benign |
Het |
| Ifnlr1 |
A |
G |
4: 135,432,593 (GRCm39) |
E343G |
probably benign |
Het |
| Ighv5-9 |
A |
G |
12: 113,625,582 (GRCm39) |
S54P |
probably benign |
Het |
| Insyn2b |
G |
A |
11: 34,352,231 (GRCm39) |
G91E |
probably damaging |
Het |
| Irf2bpl |
A |
G |
12: 86,928,892 (GRCm39) |
S594P |
possibly damaging |
Het |
| Kcnq2 |
A |
G |
2: 180,728,766 (GRCm39) |
S548P |
probably damaging |
Het |
| Lrp2 |
G |
A |
2: 69,302,712 (GRCm39) |
R3006W |
probably damaging |
Het |
| Lrrc4c |
A |
T |
2: 97,459,646 (GRCm39) |
I91F |
probably damaging |
Het |
| Mdh1b |
T |
C |
1: 63,750,663 (GRCm39) |
D435G |
probably benign |
Het |
| Mettl3 |
A |
T |
14: 52,537,184 (GRCm39) |
S182T |
probably damaging |
Het |
| Mllt6 |
A |
G |
11: 97,569,233 (GRCm39) |
T862A |
probably benign |
Het |
| Mmp27 |
G |
T |
9: 7,578,983 (GRCm39) |
R412I |
probably damaging |
Het |
| Mstn |
A |
G |
1: 53,105,582 (GRCm39) |
N308S |
possibly damaging |
Het |
| Ncapg |
A |
G |
5: 45,828,551 (GRCm39) |
T101A |
probably benign |
Het |
| Ngf |
C |
T |
3: 102,427,790 (GRCm39) |
R180W |
probably damaging |
Het |
| Notch1 |
G |
A |
2: 26,364,136 (GRCm39) |
Q862* |
probably null |
Het |
| Nsrp1 |
T |
C |
11: 76,936,570 (GRCm39) |
D542G |
probably damaging |
Het |
| Nup214 |
C |
A |
2: 31,873,171 (GRCm39) |
T255K |
probably benign |
Het |
| Or5b21 |
T |
A |
19: 12,839,916 (GRCm39) |
M259K |
probably damaging |
Het |
| Or8b43 |
T |
A |
9: 38,360,679 (GRCm39) |
D170E |
probably benign |
Het |
| Papln |
C |
T |
12: 83,829,677 (GRCm39) |
P911S |
probably benign |
Het |
| Pdxdc1 |
A |
G |
16: 13,693,933 (GRCm39) |
V163A |
probably benign |
Het |
| Plekhj1 |
A |
T |
10: 80,633,609 (GRCm39) |
I76N |
probably damaging |
Het |
| Pnp2 |
A |
G |
14: 51,201,025 (GRCm39) |
|
probably null |
Het |
| Polr3gl |
T |
C |
3: 96,487,208 (GRCm39) |
E89G |
probably benign |
Het |
| Polrmt |
A |
G |
10: 79,582,385 (GRCm39) |
M1T |
probably null |
Het |
| Prss37 |
A |
G |
6: 40,491,917 (GRCm39) |
I221T |
possibly damaging |
Het |
| Ptx4 |
C |
T |
17: 25,342,139 (GRCm39) |
Q205* |
probably null |
Het |
| Qsox1 |
T |
C |
1: 155,655,414 (GRCm39) |
E583G |
probably benign |
Het |
| Riok3 |
T |
A |
18: 12,288,300 (GRCm39) |
N492K |
probably benign |
Het |
| Sec13 |
A |
G |
6: 113,712,153 (GRCm39) |
W61R |
probably damaging |
Het |
| Slc20a2 |
T |
C |
8: 23,051,221 (GRCm39) |
V418A |
possibly damaging |
Het |
| Smad9 |
G |
A |
3: 54,696,651 (GRCm39) |
V239I |
probably benign |
Het |
| Stmn2 |
A |
G |
3: 8,610,792 (GRCm39) |
E92G |
probably damaging |
Het |
| Taf1c |
A |
G |
8: 120,325,537 (GRCm39) |
V775A |
probably benign |
Het |
| Thsd7a |
T |
A |
6: 12,330,991 (GRCm39) |
I1384L |
probably benign |
Het |
| Tnxb |
A |
G |
17: 34,932,606 (GRCm39) |
Y2275C |
probably damaging |
Het |
| Trmo |
G |
T |
4: 46,382,388 (GRCm39) |
T243N |
probably benign |
Het |
| Tyrp1 |
C |
T |
4: 80,758,883 (GRCm39) |
A252V |
probably damaging |
Het |
| Vasp |
T |
C |
7: 18,991,642 (GRCm39) |
*376W |
probably null |
Het |
| Vmn1r231 |
T |
C |
17: 21,110,613 (GRCm39) |
I101V |
possibly damaging |
Het |
| Zfp532 |
T |
C |
18: 65,756,837 (GRCm39) |
S257P |
probably benign |
Het |
| Zfp563 |
G |
A |
17: 33,324,683 (GRCm39) |
C426Y |
probably damaging |
Het |
| Zfp647 |
TGCACG |
TGCACGCACG |
15: 76,795,244 (GRCm39) |
|
probably null |
Het |
| Zfp703 |
C |
A |
8: 27,469,801 (GRCm39) |
H488Q |
probably damaging |
Het |
| Zfp964 |
A |
G |
8: 70,116,758 (GRCm39) |
N452D |
possibly damaging |
Het |
| Zfyve28 |
A |
C |
5: 34,390,698 (GRCm39) |
Y188D |
probably damaging |
Het |
|
| Other mutations in Clasrp |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02394:Clasrp
|
APN |
7 |
19,337,179 (GRCm39) |
missense |
probably damaging |
1.00 |
|
clarissa
|
UTSW |
7 |
19,324,173 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
suet
|
UTSW |
7 |
19,320,393 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R0518:Clasrp
|
UTSW |
7 |
19,322,528 (GRCm39) |
missense |
probably benign |
0.32 |
|
R0519:Clasrp
|
UTSW |
7 |
19,318,089 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R0521:Clasrp
|
UTSW |
7 |
19,322,528 (GRCm39) |
missense |
probably benign |
0.32 |
|
R0626:Clasrp
|
UTSW |
7 |
19,318,418 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R0826:Clasrp
|
UTSW |
7 |
19,318,226 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R1918:Clasrp
|
UTSW |
7 |
19,319,188 (GRCm39) |
nonsense |
probably null |
|
|
R2044:Clasrp
|
UTSW |
7 |
19,320,640 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R2256:Clasrp
|
UTSW |
7 |
19,320,510 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R2257:Clasrp
|
UTSW |
7 |
19,320,510 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R2870:Clasrp
|
UTSW |
7 |
19,319,165 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R2870:Clasrp
|
UTSW |
7 |
19,319,165 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R2871:Clasrp
|
UTSW |
7 |
19,319,165 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R2871:Clasrp
|
UTSW |
7 |
19,319,165 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R2940:Clasrp
|
UTSW |
7 |
19,319,165 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R3408:Clasrp
|
UTSW |
7 |
19,319,165 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R3691:Clasrp
|
UTSW |
7 |
19,319,165 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R4168:Clasrp
|
UTSW |
7 |
19,315,079 (GRCm39) |
unclassified |
probably benign |
|
|
R4496:Clasrp
|
UTSW |
7 |
19,319,165 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R4505:Clasrp
|
UTSW |
7 |
19,319,165 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R4507:Clasrp
|
UTSW |
7 |
19,319,165 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R4572:Clasrp
|
UTSW |
7 |
19,318,389 (GRCm39) |
splice site |
probably null |
|
|
R4753:Clasrp
|
UTSW |
7 |
19,328,865 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4871:Clasrp
|
UTSW |
7 |
19,324,173 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R5538:Clasrp
|
UTSW |
7 |
19,318,707 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R5582:Clasrp
|
UTSW |
7 |
19,320,781 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R5615:Clasrp
|
UTSW |
7 |
19,320,372 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R5794:Clasrp
|
UTSW |
7 |
19,325,034 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5944:Clasrp
|
UTSW |
7 |
19,328,431 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6102:Clasrp
|
UTSW |
7 |
19,320,393 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R6171:Clasrp
|
UTSW |
7 |
19,318,747 (GRCm39) |
splice site |
probably benign |
|
|
R6485:Clasrp
|
UTSW |
7 |
19,320,294 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R6600:Clasrp
|
UTSW |
7 |
19,324,207 (GRCm39) |
nonsense |
probably null |
|
|
R7383:Clasrp
|
UTSW |
7 |
19,319,198 (GRCm39) |
missense |
unknown |
|
|
R7719:Clasrp
|
UTSW |
7 |
19,321,769 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7750:Clasrp
|
UTSW |
7 |
19,318,516 (GRCm39) |
makesense |
probably null |
|
|
R7808:Clasrp
|
UTSW |
7 |
19,322,671 (GRCm39) |
splice site |
probably null |
|
|
R8192:Clasrp
|
UTSW |
7 |
19,329,387 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R8820:Clasrp
|
UTSW |
7 |
19,320,362 (GRCm39) |
missense |
unknown |
|
|
R8821:Clasrp
|
UTSW |
7 |
19,320,362 (GRCm39) |
missense |
unknown |
|
|
R8924:Clasrp
|
UTSW |
7 |
19,318,232 (GRCm39) |
missense |
unknown |
|
|
R9471:Clasrp
|
UTSW |
7 |
19,319,172 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- TCAAGAGTCTGGGACTTGGG -3'
(R):5'- ACCCTGGCTATTGTGAGAGGTG -3'
Sequencing Primer
(F):5'- GACTTGGGGGCCAGCTG -3'
(R):5'- CCTTGAGTAGGCTGTCAGAGAG -3'
|
| Posted On |
2016-04-27 |
Incidental Mutation