Mutagenetix > Incidental Mutation

Incidental Mutation 'R4941:Zfp990'

383071

Institutional Source

Beutler Lab

Gene Symbol

Zfp990

Ensembl Gene

ENSMUSG00000078503

Gene Name

zinc finger protein 990

Synonyms

Gm13225

MMRRC Submission

042539-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R4941 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

145510759-145539188 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 145536837 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Isoleucine at position 135 (N135I)

Ref Sequence

ENSEMBL: ENSMUSP00000101368 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000105741] [ENSMUST00000105742] [ENSMUST00000136309]

AlphaFold

B1AVN5

Predicted Effect

probably damaging
Transcript: ENSMUST00000105741
AA Change: N135I

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000101367
Gene: ENSMUSG00000078503
AA Change: N135I

Domain	Start	End	E-Value	Type
KRAB	13	76	1.34e-15	SMART
ZnF_C2H2	240	262	2.24e-3	SMART
ZnF_C2H2	268	290	3.58e-2	SMART
ZnF_C2H2	296	318	8.34e-3	SMART
ZnF_C2H2	324	346	1.22e-4	SMART
ZnF_C2H2	352	374	1.4e-4	SMART
ZnF_C2H2	380	402	9.73e-4	SMART
ZnF_C2H2	408	430	1.6e-4	SMART
ZnF_C2H2	436	458	1.92e-2	SMART
ZnF_C2H2	464	486	1.4e-4	SMART
ZnF_C2H2	492	514	9.73e-4	SMART
ZnF_C2H2	520	542	1.84e-4	SMART
ZnF_C2H2	548	570	4.47e-3	SMART
ZnF_C2H2	576	598	4.47e-3	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000105742
AA Change: N135I

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000101368
Gene: ENSMUSG00000078503
AA Change: N135I

Domain	Start	End	E-Value	Type
KRAB	13	76	1.34e-15	SMART
ZnF_C2H2	240	262	2.24e-3	SMART
ZnF_C2H2	268	290	3.58e-2	SMART
ZnF_C2H2	296	318	8.34e-3	SMART
ZnF_C2H2	324	346	1.22e-4	SMART
ZnF_C2H2	352	374	1.4e-4	SMART
ZnF_C2H2	380	402	9.73e-4	SMART
ZnF_C2H2	408	430	1.6e-4	SMART
ZnF_C2H2	436	458	1.92e-2	SMART
ZnF_C2H2	464	486	1.4e-4	SMART
ZnF_C2H2	492	514	9.73e-4	SMART
ZnF_C2H2	520	542	1.84e-4	SMART
ZnF_C2H2	548	570	4.47e-3	SMART
ZnF_C2H2	576	598	4.47e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000136309

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.4%
20x: 89.0%

Validation Efficiency

97% (112/116)

Allele List at MGI

Other mutations in this stock

Total: 98 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932438A13Rik	A	C	3: 36,917,702 (GRCm38)	H528P	probably damaging	Het
4932438A13Rik	G	A	3: 36,919,901 (GRCm38)	S600N	probably benign	Het
A4galt	T	A	15: 83,228,328 (GRCm38)	I85F	probably damaging	Het
Abcc6	T	A	7: 46,012,523 (GRCm38)	I435F	probably benign	Het
Adam3	T	C	8: 24,677,316 (GRCm38)		probably benign	Het
Adrb3	T	C	8: 27,227,422 (GRCm38)	Y333C	probably damaging	Het
Ago4	A	T	4: 126,526,054 (GRCm38)	D43E	probably benign	Het
Agt	T	A	8: 124,556,988 (GRCm38)	Q464L	probably benign	Het
Amdhd1	A	T	10: 93,531,601 (GRCm38)	D230E	probably damaging	Het
Aplf	A	T	6: 87,646,349 (GRCm38)	N249K	probably benign	Het
Aplf	A	G	6: 87,668,423 (GRCm38)	I33T	probably damaging	Het
Arap2	A	G	5: 62,749,478 (GRCm38)	M66T	probably benign	Het
Atf4	T	C	15: 80,256,233 (GRCm38)		probably benign	Het
AU019823	G	T	9: 50,607,509 (GRCm38)	Q268K	probably benign	Het
Bahcc1	A	C	11: 120,286,665 (GRCm38)	H2068P	probably benign	Het
Bcor	C	T	X: 12,040,486 (GRCm38)	R1551Q	probably damaging	Het
Catsper1	C	A	19: 5,341,438 (GRCm38)	A616D	possibly damaging	Het
Ccdc94	A	G	17: 55,964,149 (GRCm38)	D97G	possibly damaging	Het
Cdkn3	A	G	14: 46,769,863 (GRCm38)	D159G	possibly damaging	Het
Cep162	T	C	9: 87,225,969 (GRCm38)		probably benign	Het
Clca1	T	A	3: 145,015,653 (GRCm38)	I386L	probably damaging	Het
Cldn10	G	A	14: 118,788,313 (GRCm38)	G53S	possibly damaging	Het
Cmtm3	T	C	8: 104,343,828 (GRCm38)	L73P	probably damaging	Het
Cnksr3	A	C	10: 7,152,925 (GRCm38)	L149R	probably benign	Het
Cope	T	C	8: 70,302,934 (GRCm38)		probably null	Het
Cpa6	T	A	1: 10,409,337 (GRCm38)	M224L	probably benign	Het
Cyp2d41-ps	T	C	15: 82,781,953 (GRCm38)		noncoding transcript	Het
Ddx55	T	A	5: 124,568,716 (GRCm38)	L592*	probably null	Het
Deup1	T	C	9: 15,588,027 (GRCm38)	M333V	probably benign	Het
Eif4a1	T	C	11: 69,667,814 (GRCm38)		probably benign	Het
Eif4g3	A	C	4: 138,170,565 (GRCm38)	D1026A	probably damaging	Het
Eif5b	T	C	1: 38,051,199 (GRCm38)	V1153A	probably damaging	Het
Ercc8	G	T	13: 108,160,767 (GRCm38)		probably benign	Het
Fam227a	C	A	15: 79,640,003 (GRCm38)		probably null	Het
Fat1	A	G	8: 45,036,275 (GRCm38)	I3505V	probably benign	Het
Fat3	T	G	9: 16,375,152 (GRCm38)	E1025A	probably damaging	Het
Fat4	C	T	3: 38,957,452 (GRCm38)	R2234W	probably damaging	Het
Fer1l4	G	T	2: 156,045,089 (GRCm38)	F634L	probably damaging	Het
Fetub	G	A	16: 22,937,874 (GRCm38)	V162I	probably benign	Het
Fgd4	T	C	16: 16,484,538 (GRCm38)	Q51R	probably benign	Het
Fgfr2	T	C	7: 130,198,445 (GRCm38)	H140R	probably benign	Het
Flt3	T	A	5: 147,356,375 (GRCm38)		probably null	Het
Gabrb1	A	G	5: 72,136,778 (GRCm38)	N465S	probably damaging	Het
Gapdhs	T	C	7: 30,733,266 (GRCm38)	I206V	probably benign	Het
Gkn3	C	T	6: 87,383,525 (GRCm38)	A163T	probably damaging	Het
Glp2r	T	C	11: 67,746,703 (GRCm38)		probably null	Het
Gm4956	T	A	1: 21,298,082 (GRCm38)		noncoding transcript	Het
Gtf2a1l	A	T	17: 88,714,922 (GRCm38)	D447V	probably damaging	Het
Hsd3b5	A	G	3: 98,619,063 (GRCm38)	W356R	probably damaging	Het
Idh2	A	T	7: 80,096,099 (GRCm38)	V335D	probably damaging	Het
Isyna1	T	C	8: 70,595,496 (GRCm38)	I184T	probably damaging	Het
Kcnh2	A	G	5: 24,331,087 (GRCm38)	S320P	probably damaging	Het
Klk14	G	A	7: 43,692,077 (GRCm38)	C51Y	probably damaging	Het
Kpna6	A	G	4: 129,648,032 (GRCm38)	F524S	probably damaging	Het
Lap3	A	T	5: 45,506,197 (GRCm38)	M338L	probably benign	Het
Lins1	T	C	7: 66,709,450 (GRCm38)		probably benign	Het
Llgl1	C	T	11: 60,709,568 (GRCm38)	P581L	probably benign	Het
Lrrc43	A	G	5: 123,501,063 (GRCm38)	D385G	probably benign	Het
Maf	T	C	8: 115,706,793 (GRCm38)	D24G	unknown	Het
Nell1	T	C	7: 50,062,638 (GRCm38)	S69P	probably benign	Het
Olfr1342	C	T	4: 118,689,892 (GRCm38)	V187I	possibly damaging	Het
Olfr1436	A	G	19: 12,298,896 (GRCm38)	S79P	possibly damaging	Het
Olfr531	T	A	7: 140,400,879 (GRCm38)	M56L	probably benign	Het
Olfr609	T	C	7: 103,492,251 (GRCm38)	D209G	probably damaging	Het
Olfr91	C	T	17: 37,093,592 (GRCm38)	G94E	probably damaging	Het
Olfr969	T	C	9: 39,795,864 (GRCm38)	M163T	possibly damaging	Het
Oxld1	T	C	11: 120,457,036 (GRCm38)	T112A	probably benign	Het
Parp14	T	C	16: 35,846,033 (GRCm38)	N1210S	probably benign	Het
Pcdhb10	C	A	18: 37,412,834 (GRCm38)	T321K	probably benign	Het
Pcdhb8	C	T	18: 37,356,006 (GRCm38)	L246F	probably benign	Het
Pcdhga1	T	A	18: 37,662,606 (GRCm38)	I221K	probably benign	Het
Pcdhga9	T	A	18: 37,738,132 (GRCm38)	V338E	probably damaging	Het
Pdcd11	T	C	19: 47,119,886 (GRCm38)	S1231P	probably damaging	Het
Pde6c	A	T	19: 38,151,565 (GRCm38)	L325F	probably damaging	Het
Pnpla7	T	A	2: 24,997,264 (GRCm38)		probably null	Het
Pparg	T	A	6: 115,490,110 (GRCm38)	V478E	probably damaging	Het
Ppib	T	C	9: 66,060,390 (GRCm38)	V42A	probably benign	Het
Ppox	T	C	1: 171,277,593 (GRCm38)	M341V	probably damaging	Het
Proc	T	C	18: 32,125,113 (GRCm38)	K260E	possibly damaging	Het
Ptpro	C	T	6: 137,392,765 (GRCm38)	P525L	probably damaging	Het
Rnf14	C	A	18: 38,308,382 (GRCm38)	A275E	probably damaging	Het
Scnn1b	C	T	7: 121,912,008 (GRCm38)	P306L	probably damaging	Het
Sec14l5	A	G	16: 5,176,500 (GRCm38)	E386G	probably damaging	Het
Sftpa1	T	A	14: 41,132,552 (GRCm38)	I32N	probably damaging	Het
Slc26a5	A	G	5: 21,820,386 (GRCm38)	I408T	probably damaging	Het
Slc7a13	A	G	4: 19,841,467 (GRCm38)	Y438C	probably damaging	Het
Spire1	T	C	18: 67,519,314 (GRCm38)	E231G	possibly damaging	Het
Stab1	T	A	14: 31,151,571 (GRCm38)	I1014F	probably benign	Het
Steap2	T	C	5: 5,677,651 (GRCm38)	Y228C	probably damaging	Het
Tmem131l	T	C	3: 83,899,239 (GRCm38)	T1487A	probably benign	Het
Tmem171	A	G	13: 98,692,295 (GRCm38)	F116L	possibly damaging	Het
Tmem215	T	C	4: 40,474,520 (GRCm38)	V199A	probably damaging	Het
Tmem45a	T	C	16: 56,822,289 (GRCm38)	N173S	possibly damaging	Het
Uqcrc2	C	T	7: 120,643,078 (GRCm38)	R148C	probably benign	Het
Vmn2r116	A	G	17: 23,401,142 (GRCm38)	K617E	probably damaging	Het
Xrcc6	T	C	15: 82,039,812 (GRCm38)	L229P	probably damaging	Het
Zfp184	A	G	13: 21,949,721 (GRCm38)	D46G	probably damaging	Het
Zfp790	T	A	7: 29,829,491 (GRCm38)	C534S	possibly damaging	Het

Other mutations in Zfp990

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00841:Zfp990	APN	4	145,537,868 (GRCm38)	missense	probably damaging	0.99
IGL01774:Zfp990	APN	4	145,536,948 (GRCm38)	missense	probably benign	0.28
IGL01895:Zfp990	APN	4	145,536,858 (GRCm38)	missense	probably damaging	0.99
IGL01895:Zfp990	APN	4	145,536,857 (GRCm38)	missense	probably damaging	0.97
IGL02349:Zfp990	APN	4	145,530,877 (GRCm38)	utr 5 prime	probably benign
IGL02598:Zfp990	APN	4	145,536,963 (GRCm38)	missense	possibly damaging	0.67
IGL02940:Zfp990	APN	4	145,534,922 (GRCm38)	splice site	probably null
IGL03026:Zfp990	APN	4	145,537,110 (GRCm38)	missense	possibly damaging	0.54
R0007:Zfp990	UTSW	4	145,537,438 (GRCm38)	missense	probably benign	0.00
R0352:Zfp990	UTSW	4	145,536,604 (GRCm38)	missense	probably damaging	0.99
R0631:Zfp990	UTSW	4	145,537,302 (GRCm38)	missense	possibly damaging	0.89
R1490:Zfp990	UTSW	4	145,537,283 (GRCm38)	missense	probably benign	0.44
R1537:Zfp990	UTSW	4	145,536,996 (GRCm38)	missense	possibly damaging	0.67
R1832:Zfp990	UTSW	4	145,538,210 (GRCm38)	missense	possibly damaging	0.51
R1956:Zfp990	UTSW	4	145,534,882 (GRCm38)	missense	probably damaging	1.00
R1982:Zfp990	UTSW	4	145,536,869 (GRCm38)	missense	probably damaging	0.99
R2024:Zfp990	UTSW	4	145,537,404 (GRCm38)	missense	possibly damaging	0.69
R2097:Zfp990	UTSW	4	145,537,322 (GRCm38)	missense	possibly damaging	0.94
R2235:Zfp990	UTSW	4	145,537,891 (GRCm38)	missense	probably damaging	0.99
R4194:Zfp990	UTSW	4	145,536,977 (GRCm38)	splice site	probably null
R4195:Zfp990	UTSW	4	145,536,977 (GRCm38)	splice site	probably null
R4418:Zfp990	UTSW	4	145,536,728 (GRCm38)	missense	possibly damaging	0.87
R4617:Zfp990	UTSW	4	145,537,046 (GRCm38)	missense	possibly damaging	0.59
R4736:Zfp990	UTSW	4	145,536,942 (GRCm38)	missense	possibly damaging	0.95
R4880:Zfp990	UTSW	4	145,537,920 (GRCm38)	missense	probably benign
R5014:Zfp990	UTSW	4	145,538,099 (GRCm38)	missense	possibly damaging	0.93
R5945:Zfp990	UTSW	4	145,538,043 (GRCm38)	missense	probably damaging	0.98
R6238:Zfp990	UTSW	4	145,537,913 (GRCm38)	missense	probably damaging	1.00
R6255:Zfp990	UTSW	4	145,537,789 (GRCm38)	missense	probably benign	0.00
R6267:Zfp990	UTSW	4	145,538,103 (GRCm38)	missense	possibly damaging	0.59
R6296:Zfp990	UTSW	4	145,538,103 (GRCm38)	missense	possibly damaging	0.59
R6412:Zfp990	UTSW	4	145,537,568 (GRCm38)	missense	probably benign	0.00
R6616:Zfp990	UTSW	4	145,537,145 (GRCm38)	missense	probably benign	0.01
R6701:Zfp990	UTSW	4	145,538,178 (GRCm38)	missense	probably benign	0.45
R6720:Zfp990	UTSW	4	145,536,927 (GRCm38)	missense	possibly damaging	0.67
R7015:Zfp990	UTSW	4	145,536,635 (GRCm38)	missense	probably damaging	0.99
R7487:Zfp990	UTSW	4	145,537,587 (GRCm38)	missense	probably damaging	1.00
R7722:Zfp990	UTSW	4	145,536,962 (GRCm38)	missense	possibly damaging	0.86
R8749:Zfp990	UTSW	4	145,537,586 (GRCm38)	missense	probably damaging	0.96
R8785:Zfp990	UTSW	4	145,537,676 (GRCm38)	missense	probably benign	0.00
R9161:Zfp990	UTSW	4	145,534,939 (GRCm38)	missense	possibly damaging	0.71
R9211:Zfp990	UTSW	4	145,537,601 (GRCm38)	missense	probably damaging	0.98
Z1176:Zfp990	UTSW	4	145,536,811 (GRCm38)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- GCCAGTACATTGTCCATGAAC -3'
(R):5'- GGGTAAGGCATTTGTCACTTTTACTAC -3'

Sequencing Primer
(F):5'- GCCAGTACATTGTCCATGAACACATG -3'
(R):5'- CCATGATAAATTCTCTGCTGACTTTG -3'

Posted On

2016-04-27